Wall clock time and date at job start Tue Mar 31 2020 10:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46411 * 2 1 4 4 C 1.52996 * 109.46986 * 240.00579 * 2 1 3 5 5 C 1.52999 * 109.47075 * 174.99506 * 4 2 1 6 6 C 1.50703 * 109.47182 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99781 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00203 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99543 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00313 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46975 * 90.00263 * 10 8 6 12 12 H 1.48497 * 109.47185 * 210.00683 * 10 8 6 13 13 H 1.48508 * 109.47129 * 330.00832 * 10 8 6 14 14 N 1.46897 * 109.47440 * 120.00401 * 2 1 3 15 15 C 1.46854 * 110.99665 * 295.00227 * 14 2 1 16 16 C 1.53037 * 109.51886 * 185.84309 * 15 14 2 17 17 C 1.53126 * 109.27801 * 300.81620 * 16 15 14 18 18 C 1.52994 * 109.52218 * 177.56323 * 17 16 15 19 19 C 1.53006 * 109.46970 * 175.00032 * 18 17 16 20 20 C 1.50698 * 109.47052 * 179.97438 * 19 18 17 21 21 C 1.38232 * 120.00066 * 269.72593 * 20 19 18 22 22 C 1.38235 * 119.99940 * 179.76523 * 21 20 19 23 23 C 1.38237 * 119.99985 * 0.51011 * 22 21 20 24 24 C 1.38233 * 120.00001 * 359.74495 * 23 22 21 25 25 C 1.38235 * 119.99866 * 0.02562 * 24 23 22 26 26 C 1.53124 * 109.15878 * 57.65645 * 17 16 15 27 27 C 1.46844 * 111.00090 * 59.20903 * 14 2 1 28 28 H 1.08994 * 109.46797 * 299.99457 * 1 2 3 29 29 H 1.08996 * 109.47260 * 59.99530 * 1 2 3 30 30 H 1.09003 * 109.46411 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47020 * 294.99669 * 4 2 1 32 32 H 1.08997 * 109.47456 * 54.99624 * 4 2 1 33 33 H 1.09000 * 109.47329 * 299.99973 * 5 4 2 34 34 H 1.09008 * 109.46948 * 60.00261 * 5 4 2 35 35 H 0.97002 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.46310 * 65.82535 * 15 14 2 37 37 H 1.09004 * 109.45830 * 305.85222 * 15 14 2 38 38 H 1.09000 * 109.50480 * 180.88135 * 16 15 14 39 39 H 1.08992 * 109.50737 * 60.75564 * 16 15 14 40 40 H 1.08999 * 109.51925 * 297.75795 * 17 16 15 41 41 H 1.08998 * 109.47449 * 294.99891 * 18 17 16 42 42 H 1.08999 * 109.47186 * 55.00327 * 18 17 16 43 43 H 1.08998 * 109.46919 * 300.00183 * 19 18 17 44 44 H 1.08999 * 109.46926 * 60.00135 * 19 18 17 45 45 H 1.07997 * 120.00118 * 0.02562 * 21 20 19 46 46 H 1.08002 * 120.00077 * 180.23058 * 22 21 20 47 47 H 1.08002 * 120.00135 * 179.71918 * 23 22 21 48 48 H 1.07995 * 120.00088 * 179.97438 * 24 23 22 49 49 H 1.08004 * 120.00287 * 179.97438 * 25 24 23 50 50 H 1.08999 * 109.50059 * 62.28737 * 26 17 16 51 51 H 1.08993 * 109.49981 * 182.40384 * 26 17 16 52 52 H 1.09002 * 109.46133 * 294.17882 * 27 14 2 53 53 H 1.09002 * 109.46211 * 54.14407 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6130 -1.3138 6 6 4.0672 -1.3239 -2.5440 7 1 3.3687 -1.8043 -3.2132 8 6 5.4184 -1.3600 -2.8159 9 7 6.2689 -0.7746 -2.0013 10 14 6.0411 -2.2405 -4.3411 11 1 6.0906 -1.2863 -5.4780 12 1 7.4026 -2.7744 -4.0834 13 1 5.1250 -3.3608 -4.6747 14 7 2.0198 -0.6926 1.1993 15 6 1.6489 0.0388 2.4176 16 6 2.2967 -0.6295 3.6324 17 6 1.8225 -2.0827 3.7227 18 6 2.5136 -2.7738 4.8998 19 6 1.9477 -4.1856 5.0660 20 6 2.6289 -4.8666 6.2250 21 6 3.7769 -5.6070 6.0140 22 6 4.4044 -6.2276 7.0779 23 6 3.8779 -6.1165 8.3513 24 6 2.7269 -5.3804 8.5615 25 6 2.1021 -4.7559 7.4983 26 6 2.1779 -2.8090 2.4224 27 6 1.5336 -2.0775 1.2427 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.7517 -1.7714 -1.2057 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4372 -1.3574 34 1 3.9995 -1.0727 -0.4261 35 1 7.2196 -0.8003 -2.1923 36 1 0.5650 0.0278 2.5320 37 1 1.9957 1.0695 2.3422 38 1 2.0086 -0.0958 4.5381 39 1 3.3811 -0.6067 3.5252 40 1 0.7426 -2.1049 3.8689 41 1 3.5851 -2.8320 4.7089 42 1 2.3374 -2.2022 5.8111 43 1 0.8762 -4.1274 5.2569 44 1 2.1239 -4.7571 4.1547 45 1 4.1860 -5.6972 5.0185 46 1 5.3035 -6.8031 6.9136 47 1 4.3657 -6.6051 9.1818 48 1 2.3154 -5.2939 9.5562 49 1 1.2026 -4.1811 7.6624 50 1 3.2605 -2.8204 2.2962 51 1 1.8050 -3.8323 2.4637 52 1 0.4502 -2.0785 1.3626 53 1 1.7965 -2.5839 0.3140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506783.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:23 Heat of formation + Delta-G solvation = -9.368046 kcal Electronic energy + Delta-G solvation = -26282.281659 eV Core-core repulsion = 22923.933377 eV Total energy + Delta-G solvation = -3358.348281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.69811 -39.15822 -36.34807 -33.86276 -32.77236 -31.09680 -31.05707 -30.52093 -29.26985 -27.96709 -25.31610 -24.59311 -23.09444 -22.72837 -22.17204 -21.18122 -20.59704 -19.75717 -18.74260 -16.95093 -16.14001 -15.90902 -15.53049 -15.30962 -14.68228 -14.47558 -14.37488 -14.18155 -13.95072 -13.65545 -13.60176 -13.27621 -13.07658 -12.73860 -12.71084 -12.54325 -12.07413 -11.92240 -11.72706 -11.65863 -11.43770 -11.32668 -11.27163 -11.05302 -10.92943 -10.82290 -10.71263 -10.46307 -10.41052 -10.24306 -10.02766 -9.84749 -9.49992 -9.16227 -9.10035 -8.85819 -8.81451 -8.21772 -7.66949 -5.86977 -3.88322 1.18560 1.22152 3.37584 3.43790 3.46937 3.60590 4.33256 4.54895 4.55051 4.65012 4.80377 4.87281 4.91304 4.93395 5.05765 5.18908 5.33016 5.34933 5.40873 5.45158 5.48298 5.52278 5.55968 5.62408 5.65814 5.67981 5.71684 5.79266 5.83785 5.88116 5.90404 5.93988 6.10950 6.11606 6.13899 6.19497 6.27035 6.29225 6.33572 6.34346 6.41202 6.42093 6.46875 6.51234 6.67813 6.73063 6.84114 6.93190 7.31812 7.65521 7.68024 7.86924 8.09343 8.24475 8.58737 9.20782 9.74221 11.23918 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.012174 B = 0.002746 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.456990 B =10196.028389 C =11910.712787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.076 0.924 4 C -0.104 4.104 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.517 5.517 15 C 0.056 3.944 16 C -0.110 4.110 17 C -0.085 4.085 18 C -0.105 4.105 19 C -0.084 4.084 20 C -0.076 4.076 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.112 4.112 27 C 0.053 3.947 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.009 0.991 34 H 0.032 0.968 35 H 0.258 0.742 36 H 0.026 0.974 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.074 0.926 51 H 0.061 0.939 52 H 0.025 0.975 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.616 -6.280 20.159 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.027 4.027 3 H 0.094 0.906 4 C -0.142 4.142 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.241 5.241 15 C -0.072 4.072 16 C -0.148 4.148 17 C -0.104 4.104 18 C -0.143 4.143 19 C -0.121 4.121 20 C -0.076 4.076 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.138 4.138 26 C -0.150 4.150 27 C -0.075 4.075 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.093 0.907 51 H 0.080 0.920 52 H 0.043 0.957 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.910 -6.261 20.158 23.318 hybrid contribution -0.431 -0.414 -0.781 0.983 sum -10.340 -6.675 19.377 22.955 Atomic orbital electron populations 1.22503 0.99089 1.01522 1.01216 1.21851 0.90924 0.98618 0.91260 0.90584 1.21759 1.00842 0.98320 0.93274 1.18992 0.88049 0.96682 0.96951 1.21341 0.91823 1.34072 1.08472 0.93178 1.24992 0.97154 0.95798 0.96441 1.69982 1.02153 1.44351 1.36823 0.86702 0.78134 0.79997 0.83768 1.20854 1.21338 1.20041 1.62040 1.59337 1.01546 1.01137 1.22043 0.96924 0.97816 0.90457 1.21620 1.01802 0.94729 0.96673 1.21207 0.99289 0.95174 0.94731 1.21591 1.00574 0.94115 0.97990 1.20714 0.99275 0.96183 0.95935 1.20007 0.95549 0.97032 0.94995 1.21145 0.95501 0.97521 0.99326 1.21176 0.99843 0.99684 0.92929 1.21126 0.96709 0.99889 0.97093 1.21125 0.96064 0.97905 0.98787 1.21058 1.00244 1.00138 0.92407 1.21689 1.02255 0.97765 0.93274 1.22127 0.95897 0.89945 0.99538 0.93495 0.92436 0.92786 0.93273 0.93410 0.97299 0.94998 0.93254 0.95605 0.91244 0.92290 0.90846 0.91972 0.91511 0.92196 0.91246 0.90489 0.85867 0.86151 0.86379 0.86340 0.86278 0.90692 0.92020 0.95739 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.50 37.16 0.32 -2.31 16 2 C 0.08 1.41 2.35 -67.71 -0.16 1.25 16 3 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 4 C -0.10 -2.17 4.44 -26.73 -0.12 -2.29 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 10 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 N -0.52 -8.61 4.10 -226.69 -0.93 -9.53 16 15 C 0.06 0.77 5.02 -3.83 -0.02 0.76 16 16 C -0.11 -1.37 5.38 -26.65 -0.14 -1.51 16 17 C -0.09 -0.97 2.25 -90.49 -0.20 -1.17 16 18 C -0.11 -1.07 4.67 -26.73 -0.12 -1.20 16 19 C -0.08 -0.79 5.11 -27.88 -0.14 -0.93 16 20 C -0.08 -0.76 5.13 -104.63 -0.54 -1.29 16 21 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 22 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 23 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 25 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 26 C -0.11 -1.49 5.08 -26.65 -0.14 -1.62 16 27 C 0.05 0.80 4.64 -3.84 -0.02 0.79 16 28 H 0.05 0.61 6.65 -51.93 -0.35 0.26 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.76 6.52 -51.93 -0.34 0.42 16 31 H 0.05 1.01 6.05 -51.93 -0.31 0.69 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.03 0.90 7.75 -51.92 -0.40 0.50 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.03 0.34 6.73 -51.93 -0.35 -0.01 16 37 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 44 H 0.08 0.74 6.58 -51.93 -0.34 0.40 16 45 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 49 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 50 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.06 0.72 6.70 -51.93 -0.35 0.37 16 52 H 0.02 0.35 6.62 -51.93 -0.34 0.00 16 53 H 0.08 1.47 5.93 -51.93 -0.31 1.17 16 LS Contribution 403.19 15.07 6.08 6.08 Total: -1.00 -30.93 403.19 -12.74 -43.67 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -9.81 Total: -0.45 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -3.79 Total: -30.11 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.19 Total: -36.24 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.93 -12.74 -43.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506783.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.299 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds