Wall clock time and date at job start Tue Mar 31 2020 10:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46411 * 2 1 4 4 C 1.52996 * 109.46986 * 240.00579 * 2 1 3 5 5 C 1.52999 * 109.47075 * 174.99506 * 4 2 1 6 6 C 1.50703 * 109.47182 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99781 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00203 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99543 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00313 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46975 * 90.00263 * 10 8 6 12 12 H 1.48497 * 109.47185 * 210.00683 * 10 8 6 13 13 H 1.48508 * 109.47129 * 330.00832 * 10 8 6 14 14 N 1.46897 * 109.47440 * 120.00401 * 2 1 3 15 15 C 1.46854 * 110.99665 * 295.00227 * 14 2 1 16 16 C 1.53037 * 109.51886 * 185.84309 * 15 14 2 17 17 C 1.53126 * 109.27801 * 300.81620 * 16 15 14 18 18 C 1.52994 * 109.52218 * 177.56323 * 17 16 15 19 19 C 1.53006 * 109.46970 * 175.00032 * 18 17 16 20 20 C 1.50698 * 109.47052 * 179.97438 * 19 18 17 21 21 C 1.38232 * 120.00066 * 269.72593 * 20 19 18 22 22 C 1.38235 * 119.99940 * 179.76523 * 21 20 19 23 23 C 1.38237 * 119.99985 * 0.51011 * 22 21 20 24 24 C 1.38233 * 120.00001 * 359.74495 * 23 22 21 25 25 C 1.38235 * 119.99866 * 0.02562 * 24 23 22 26 26 C 1.53124 * 109.15878 * 57.65645 * 17 16 15 27 27 C 1.46844 * 111.00090 * 59.20903 * 14 2 1 28 28 H 1.08994 * 109.46797 * 299.99457 * 1 2 3 29 29 H 1.08996 * 109.47260 * 59.99530 * 1 2 3 30 30 H 1.09003 * 109.46411 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47020 * 294.99669 * 4 2 1 32 32 H 1.08997 * 109.47456 * 54.99624 * 4 2 1 33 33 H 1.09000 * 109.47329 * 299.99973 * 5 4 2 34 34 H 1.09008 * 109.46948 * 60.00261 * 5 4 2 35 35 H 0.97002 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.46310 * 65.82535 * 15 14 2 37 37 H 1.09004 * 109.45830 * 305.85222 * 15 14 2 38 38 H 1.09000 * 109.50480 * 180.88135 * 16 15 14 39 39 H 1.08992 * 109.50737 * 60.75564 * 16 15 14 40 40 H 1.08999 * 109.51925 * 297.75795 * 17 16 15 41 41 H 1.08998 * 109.47449 * 294.99891 * 18 17 16 42 42 H 1.08999 * 109.47186 * 55.00327 * 18 17 16 43 43 H 1.08998 * 109.46919 * 300.00183 * 19 18 17 44 44 H 1.08999 * 109.46926 * 60.00135 * 19 18 17 45 45 H 1.07997 * 120.00118 * 0.02562 * 21 20 19 46 46 H 1.08002 * 120.00077 * 180.23058 * 22 21 20 47 47 H 1.08002 * 120.00135 * 179.71918 * 23 22 21 48 48 H 1.07995 * 120.00088 * 179.97438 * 24 23 22 49 49 H 1.08004 * 120.00287 * 179.97438 * 25 24 23 50 50 H 1.08999 * 109.50059 * 62.28737 * 26 17 16 51 51 H 1.08993 * 109.49981 * 182.40384 * 26 17 16 52 52 H 1.09002 * 109.46133 * 294.17882 * 27 14 2 53 53 H 1.09002 * 109.46211 * 54.14407 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6130 -1.3138 6 6 4.0672 -1.3239 -2.5440 7 1 3.3687 -1.8043 -3.2132 8 6 5.4184 -1.3600 -2.8159 9 7 6.2689 -0.7746 -2.0013 10 14 6.0411 -2.2405 -4.3411 11 1 6.0906 -1.2863 -5.4780 12 1 7.4026 -2.7744 -4.0834 13 1 5.1250 -3.3608 -4.6747 14 7 2.0198 -0.6926 1.1993 15 6 1.6489 0.0388 2.4176 16 6 2.2967 -0.6295 3.6324 17 6 1.8225 -2.0827 3.7227 18 6 2.5136 -2.7738 4.8998 19 6 1.9477 -4.1856 5.0660 20 6 2.6289 -4.8666 6.2250 21 6 3.7769 -5.6070 6.0140 22 6 4.4044 -6.2276 7.0779 23 6 3.8779 -6.1165 8.3513 24 6 2.7269 -5.3804 8.5615 25 6 2.1021 -4.7559 7.4983 26 6 2.1779 -2.8090 2.4224 27 6 1.5336 -2.0775 1.2427 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.7517 -1.7714 -1.2057 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4372 -1.3574 34 1 3.9995 -1.0727 -0.4261 35 1 7.2196 -0.8003 -2.1923 36 1 0.5650 0.0278 2.5320 37 1 1.9957 1.0695 2.3422 38 1 2.0086 -0.0958 4.5381 39 1 3.3811 -0.6067 3.5252 40 1 0.7426 -2.1049 3.8689 41 1 3.5851 -2.8320 4.7089 42 1 2.3374 -2.2022 5.8111 43 1 0.8762 -4.1274 5.2569 44 1 2.1239 -4.7571 4.1547 45 1 4.1860 -5.6972 5.0185 46 1 5.3035 -6.8031 6.9136 47 1 4.3657 -6.6051 9.1818 48 1 2.3154 -5.2939 9.5562 49 1 1.2026 -4.1811 7.6624 50 1 3.2605 -2.8204 2.2962 51 1 1.8050 -3.8323 2.4637 52 1 0.4502 -2.0785 1.3626 53 1 1.7965 -2.5839 0.3140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506783.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:22 Heat of formation + Delta-G solvation = -23.270320 kcal Electronic energy + Delta-G solvation = -26282.884507 eV Core-core repulsion = 22923.933377 eV Total energy + Delta-G solvation = -3358.951129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.69346 -40.04290 -37.49729 -35.44332 -34.29670 -32.47649 -31.73490 -31.66328 -30.76345 -28.96023 -27.09244 -25.71934 -24.23447 -23.49251 -23.41302 -22.61553 -21.49231 -20.99356 -20.02249 -18.36478 -17.63528 -17.18411 -16.52940 -16.28890 -16.06046 -15.79744 -15.45917 -15.29668 -15.02113 -14.72738 -14.59045 -14.33655 -14.20551 -14.03544 -13.88129 -13.63577 -13.45574 -13.23389 -13.12961 -12.83800 -12.80877 -12.63516 -12.59084 -12.33164 -12.16816 -12.03598 -11.88759 -11.68403 -11.63188 -11.48059 -11.42028 -11.26522 -11.02640 -10.96410 -10.78769 -10.48662 -9.78906 -9.52510 -8.91268 -8.13649 -6.24343 0.49442 0.53202 1.38940 1.40668 1.51450 2.43117 2.91264 3.11043 3.18545 3.75073 3.84641 3.92775 4.01567 4.07102 4.09584 4.20703 4.30563 4.33366 4.39660 4.41637 4.44477 4.47991 4.57943 4.62276 4.68788 4.73498 4.75400 4.76736 4.78437 4.86654 4.93050 4.96763 5.01342 5.08868 5.12684 5.15770 5.17531 5.20814 5.25036 5.29887 5.33387 5.35476 5.41840 5.48825 5.58974 5.62178 5.64207 5.66146 5.80264 5.89260 6.02400 6.17638 6.33175 6.40865 6.46289 6.95532 7.43718 8.97634 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.012174 B = 0.002746 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.456990 B =10196.028389 C =11910.712787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 H 0.062 0.938 4 C -0.093 4.093 5 C 0.042 3.958 6 C -0.541 4.541 7 H 0.055 0.945 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.264 1.264 14 N -0.546 5.546 15 C 0.057 3.943 16 C -0.108 4.108 17 C -0.075 4.075 18 C -0.097 4.097 19 C -0.078 4.078 20 C -0.089 4.089 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.137 4.137 24 C -0.126 4.126 25 C -0.128 4.128 26 C -0.108 4.108 27 C 0.056 3.944 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.050 0.950 33 H -0.024 1.024 34 H 0.002 0.998 35 H 0.261 0.739 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.119 0.881 46 H 0.132 0.868 47 H 0.138 0.862 48 H 0.141 0.859 49 H 0.136 0.864 50 H 0.042 0.958 51 H 0.078 0.922 52 H 0.045 0.955 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.606 -7.009 21.185 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 H 0.081 0.919 4 C -0.131 4.131 5 C 0.005 3.995 6 C -0.579 4.579 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.188 1.188 14 N -0.271 5.271 15 C -0.071 4.071 16 C -0.146 4.146 17 C -0.094 4.094 18 C -0.134 4.134 19 C -0.115 4.115 20 C -0.089 4.089 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.144 4.144 25 C -0.146 4.146 26 C -0.146 4.146 27 C -0.072 4.072 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.068 0.932 33 H -0.005 1.005 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.137 0.863 46 H 0.150 0.850 47 H 0.156 0.844 48 H 0.159 0.841 49 H 0.153 0.847 50 H 0.061 0.939 51 H 0.097 0.903 52 H 0.063 0.937 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.916 -6.990 21.185 25.291 hybrid contribution 0.246 -0.177 -1.062 1.105 sum -11.669 -7.167 20.123 24.341 Atomic orbital electron populations 1.22351 0.95945 1.02238 1.02527 1.21647 0.93294 0.97217 0.90073 0.91929 1.21572 0.96785 0.99147 0.95588 1.18784 0.91904 0.93862 0.94962 1.21786 0.92466 1.34357 1.09340 0.92700 1.25952 0.97421 0.96530 0.99955 1.70130 1.02552 1.45648 1.38934 0.85526 0.77590 0.78988 0.79404 1.19824 1.20824 1.18816 1.61967 1.60666 1.02469 1.01961 1.22089 0.98105 0.97282 0.89598 1.21617 1.00119 0.95779 0.97074 1.21133 1.00320 0.94126 0.93799 1.21484 0.99284 0.94837 0.97803 1.20653 0.99963 0.95284 0.95601 1.20128 0.95712 0.97422 0.95646 1.21293 0.96218 0.98498 0.99592 1.21418 1.00395 0.99856 0.93206 1.21443 0.96871 0.99788 0.97385 1.21465 0.95897 0.97273 0.99765 1.21315 1.00850 1.00305 0.92164 1.21650 1.00103 0.98924 0.93901 1.22076 0.97061 0.89113 0.98923 0.91588 0.91735 0.92271 0.93034 0.93175 1.00546 0.97997 0.93054 0.93659 0.91833 0.89781 0.93431 0.90082 0.93468 0.91135 0.89787 0.91169 0.86322 0.85036 0.84382 0.84124 0.84653 0.93887 0.90315 0.93734 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.54 8.50 71.98 0.61 -3.93 16 2 C 0.09 2.99 2.35 44.92 0.11 3.10 16 3 H 0.06 2.32 8.08 -2.39 -0.02 2.30 16 4 C -0.09 -3.97 4.44 30.59 0.14 -3.84 16 5 C 0.04 2.32 4.86 29.85 0.15 2.47 16 6 C -0.54 -32.08 9.11 25.60 0.23 -31.84 16 7 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 8 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 9 N -0.93 -59.04 13.29 21.45 0.28 -58.75 16 10 Si 0.96 45.80 29.54 68.60 2.03 47.83 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 14 N -0.55 -18.40 4.10 -871.11 -3.57 -21.97 16 15 C 0.06 1.52 5.02 86.32 0.43 1.95 16 16 C -0.11 -2.58 5.38 30.65 0.16 -2.41 16 17 C -0.08 -1.60 2.25 -10.71 -0.02 -1.62 16 18 C -0.10 -1.87 4.67 30.59 0.14 -1.73 16 19 C -0.08 -1.37 5.11 29.85 0.15 -1.21 16 20 C -0.09 -1.70 5.13 -19.87 -0.10 -1.81 16 21 C -0.14 -2.81 9.70 22.27 0.22 -2.60 16 22 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 23 C -0.14 -2.19 10.05 22.27 0.22 -1.96 16 24 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 25 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 26 C -0.11 -2.88 5.08 30.65 0.16 -2.72 16 27 C 0.06 1.70 4.64 86.33 0.40 2.10 16 28 H 0.07 1.51 6.65 -2.39 -0.02 1.49 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.51 6.52 -2.39 -0.02 1.49 16 31 H 0.05 2.16 6.05 -2.39 -0.01 2.15 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 34 H 0.00 0.10 7.75 -2.38 -0.02 0.08 16 35 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.05 1.05 6.73 -2.39 -0.02 1.03 16 37 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 44 H 0.07 1.31 6.58 -2.39 -0.02 1.29 16 45 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 46 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 47 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 48 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 49 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 50 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 51 H 0.08 1.80 6.70 -2.39 -0.02 1.78 16 52 H 0.04 1.17 6.62 -2.39 -0.02 1.15 16 53 H 0.06 2.01 5.93 -2.39 -0.01 1.99 16 Total: -1.00 -68.91 403.19 3.70 -65.21 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.84 Total: 19.16 kcal Atomic # 6 Polarization: -55.59 SS G_CDS: 4.12 Total: -51.47 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.28 Total: -80.73 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -68.91 3.70 -65.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506783.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.940 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds