Wall clock time and date at job start Tue Mar 31 2020 10:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46722 * 2 1 4 4 C 1.53004 * 109.46919 * 119.99740 * 2 1 3 5 5 N 1.46901 * 109.47216 * 294.99833 * 4 2 1 6 6 C 1.46904 * 110.99783 * 293.95798 * 5 4 2 7 7 C 1.46892 * 110.99667 * 170.00228 * 5 4 2 8 8 C 1.50709 * 109.47027 * 190.00131 * 7 5 4 9 9 C 1.38634 * 119.74612 * 269.73168 * 8 7 5 10 10 C 1.37621 * 120.24271 * 179.72305 * 9 8 7 11 11 C 1.40713 * 119.74465 * 0.56144 * 10 9 8 12 12 C 1.41399 * 120.24071 * 179.68524 * 11 10 9 13 13 H 1.08002 * 119.99571 * 204.40719 * 12 11 10 14 14 C 1.39949 * 120.00091 * 24.40552 * 12 11 10 15 15 N 1.30811 * 120.00013 * 17.85639 * 14 12 11 16 16 Si 1.86800 * 119.99699 * 197.85665 * 14 12 11 17 17 H 1.48503 * 109.47451 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47065 * 120.00136 * 16 14 12 19 19 H 1.48506 * 109.47111 * 239.99966 * 16 14 12 20 20 C 1.40714 * 119.51303 * 359.71056 * 11 10 9 21 21 C 1.37611 * 119.74605 * 359.97438 * 20 11 10 22 22 C 1.53003 * 109.46907 * 239.99819 * 2 1 3 23 23 C 1.53001 * 109.46656 * 180.02562 * 22 2 1 24 24 C 1.52999 * 109.46907 * 180.02562 * 23 22 2 25 25 C 1.53002 * 109.47323 * 59.99419 * 24 23 22 26 26 C 1.52991 * 109.47347 * 300.00455 * 25 24 23 27 27 C 1.52997 * 109.47500 * 59.99835 * 26 25 24 28 28 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46796 * 300.00257 * 1 2 3 30 30 H 1.08997 * 109.47362 * 60.00225 * 1 2 3 31 31 H 1.08994 * 109.46993 * 54.99939 * 4 2 1 32 32 H 1.09002 * 109.46512 * 174.99776 * 4 2 1 33 33 H 1.08996 * 109.47138 * 60.00468 * 6 5 4 34 34 H 1.09002 * 109.46367 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.46904 * 299.99230 * 6 5 4 36 36 H 1.09000 * 109.47681 * 310.00007 * 7 5 4 37 37 H 1.09006 * 109.47473 * 70.00523 * 7 5 4 38 38 H 1.07999 * 119.87815 * 359.97190 * 9 8 7 39 39 H 1.08004 * 120.12333 * 180.28058 * 10 9 8 40 40 H 0.97007 * 120.00125 * 180.02562 * 15 14 12 41 41 H 1.08001 * 120.12105 * 179.97438 * 20 11 10 42 42 H 1.07994 * 119.87978 * 180.02562 * 21 20 11 43 43 H 1.09000 * 109.47079 * 299.99832 * 22 2 1 44 44 H 1.08997 * 109.47541 * 60.00001 * 23 22 2 45 45 H 1.09000 * 109.47187 * 299.99701 * 23 22 2 46 46 H 1.08996 * 109.47139 * 180.02562 * 24 23 22 47 47 H 1.09009 * 109.46845 * 299.99889 * 24 23 22 48 48 H 1.09000 * 109.46948 * 60.00422 * 25 24 23 49 49 H 1.08997 * 109.46825 * 179.97438 * 25 24 23 50 50 H 1.08997 * 109.47285 * 179.97438 * 26 25 24 51 51 H 1.09000 * 109.47069 * 299.99892 * 26 25 24 52 52 H 1.08997 * 109.47060 * 59.99458 * 27 26 25 53 53 H 1.08999 * 109.47891 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6514 0.0375 2.4457 6 6 2.3342 1.3375 2.4893 7 6 1.9125 -0.7356 3.6671 8 6 1.2831 -0.0396 4.8463 9 6 2.0137 0.8950 5.5638 10 6 1.4471 1.5408 6.6389 11 6 0.1251 1.2407 7.0161 12 6 -0.4652 1.8931 8.1231 13 1 -1.2796 1.4238 8.6551 14 6 0.0059 3.1467 8.5293 15 7 0.7278 3.8702 7.7128 16 14 -0.3962 3.7870 10.2374 17 1 -1.2204 2.7852 10.9603 18 1 0.8639 4.0238 10.9866 19 1 -1.1513 5.0607 10.1236 20 6 -0.6050 0.2862 6.2840 21 6 -0.0205 -0.3425 5.2085 22 6 2.0400 -0.7213 -1.2493 23 6 3.5700 -0.7218 -1.2489 24 6 4.0801 -1.4426 -2.4984 25 6 3.5705 -0.7205 -3.7474 26 6 2.0406 -0.7200 -3.7477 27 6 1.5305 0.0008 -2.4982 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7197 1.2952 32 1 3.1264 -0.7994 1.2056 33 1 2.0678 1.9176 1.6059 34 1 2.0281 1.8786 3.3847 35 1 3.4126 1.1810 2.5099 36 1 1.4858 -1.7333 3.5639 37 1 2.9883 -0.8150 3.8239 38 1 3.0299 1.1199 5.2756 39 1 2.0165 2.2718 7.1937 40 1 1.0547 4.7390 7.9944 41 1 -1.6202 0.0481 6.5651 42 1 -0.5789 -1.0750 4.6448 43 1 1.6767 -1.7490 -1.2492 44 1 3.9330 -1.2359 -0.3589 45 1 3.9337 0.3057 -1.2487 46 1 5.1700 -1.4434 -2.4979 47 1 3.7163 -2.4702 -2.4990 48 1 3.9342 0.3070 -3.7468 49 1 3.9342 -1.2338 -4.6375 50 1 1.6776 -0.2052 -4.6372 51 1 1.6769 -1.7475 -3.7483 52 1 1.8943 1.0283 -2.4976 53 1 0.4405 0.0008 -2.4981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196820137.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:17 Heat of formation + Delta-G solvation = -18.398697 kcal Electronic energy + Delta-G solvation = -26411.518327 eV Core-core repulsion = 23052.778447 eV Total energy + Delta-G solvation = -3358.739880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.48560 -38.02444 -36.64477 -34.24929 -33.30158 -31.05250 -30.32179 -29.27445 -28.99198 -27.13105 -26.75464 -24.65426 -23.14685 -22.54995 -21.45931 -20.84489 -19.97939 -19.65841 -19.51009 -17.25649 -16.09372 -15.40705 -15.29544 -14.77265 -14.75371 -14.45516 -14.28075 -13.97270 -13.77774 -13.48359 -13.30391 -13.18760 -12.78382 -12.58899 -12.44045 -12.29231 -11.91573 -11.79202 -11.53307 -11.44095 -11.28989 -11.26963 -11.23169 -11.15912 -11.05610 -10.97613 -10.88135 -10.64977 -10.51833 -10.28262 -10.25186 -10.00928 -9.94101 -9.48670 -9.34005 -9.09765 -7.81931 -7.38128 -7.23870 -6.73134 -4.31021 2.76159 3.08313 3.12395 3.13910 3.19994 3.95128 4.29228 4.51114 4.55501 4.61216 4.79016 4.89507 5.01404 5.20540 5.22065 5.27532 5.32436 5.35656 5.48300 5.56015 5.60978 5.65081 5.75495 5.77753 5.79412 5.81846 5.89056 5.90261 5.96127 5.97586 6.01558 6.06364 6.09223 6.12302 6.17914 6.25798 6.29791 6.32369 6.42607 6.45854 6.48633 6.57348 6.64346 6.98559 7.10955 7.31066 7.42283 7.55110 7.58597 7.66707 7.94106 8.09671 8.19447 8.34736 8.68201 8.93672 9.02188 10.21201 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.031119 B = 0.002241 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.570125 B =12490.653562 C =12537.150637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 H 0.069 0.931 4 C 0.057 3.943 5 N -0.531 5.531 6 C 0.025 3.975 7 C 0.120 3.880 8 C -0.205 4.205 9 C -0.094 4.094 10 C -0.166 4.166 11 C 0.111 3.889 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.793 5.793 16 Si 0.906 3.094 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.275 1.275 20 C -0.228 4.228 21 C -0.070 4.070 22 C -0.080 4.080 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.115 4.115 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.013 0.987 36 H 0.061 0.939 37 H 0.021 0.979 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.279 0.721 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.056 0.944 50 H 0.058 0.942 51 H 0.059 0.941 52 H 0.060 0.940 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.205 -6.551 -18.040 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.071 4.071 5 N -0.255 5.255 6 C -0.124 4.124 7 C -0.006 4.006 8 C -0.206 4.206 9 C -0.113 4.113 10 C -0.186 4.186 11 C 0.109 3.891 12 C -0.493 4.493 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.419 5.419 16 Si 0.730 3.270 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.200 1.200 20 C -0.248 4.248 21 C -0.088 4.088 22 C -0.099 4.099 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.152 4.152 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.100 0.900 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.078 0.922 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.814 -6.237 -18.083 19.725 hybrid contribution 0.753 0.331 0.752 1.115 sum 5.568 -5.907 -17.331 19.138 Atomic orbital electron populations 1.21755 0.94613 1.01416 1.01821 1.21178 0.96610 0.99484 0.92830 0.91257 1.22237 0.97333 0.97213 0.90358 1.62062 1.58010 1.03923 1.01488 1.22423 0.94862 0.91980 1.03087 1.20732 0.96491 0.95440 0.87928 1.18849 0.96231 1.05478 1.00080 1.20514 0.97269 0.96834 0.96719 1.21272 0.95639 1.02544 0.99114 1.17618 0.90985 0.89733 0.90797 1.19618 1.16250 1.01581 1.11812 0.90518 1.25899 0.93408 0.96545 0.98321 1.69838 1.27387 1.09996 1.34659 0.86309 0.79156 0.79083 0.82445 1.18429 1.19771 1.20043 1.20961 0.98787 1.05368 0.99647 1.20310 0.93891 0.98414 0.96232 1.21174 0.94862 0.99618 0.94247 1.21667 0.95593 1.00705 0.97534 1.21533 0.99905 0.99395 0.94831 1.21532 0.95892 1.00639 0.97630 1.21534 0.95551 1.00702 0.97893 1.21626 1.00582 0.99216 0.93794 0.93431 0.91108 0.93538 0.91531 0.95311 0.92338 0.89942 0.96848 0.92008 0.96123 0.90007 0.86623 0.91037 0.89200 0.89585 0.91414 0.91765 0.92170 0.92371 0.92183 0.92170 0.92474 0.92352 0.92181 0.92164 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.73 37.16 0.32 -1.35 16 2 C -0.08 -0.95 1.89 -90.61 -0.17 -1.12 16 3 H 0.07 0.86 6.34 -51.93 -0.33 0.53 16 4 C 0.06 0.74 4.13 -3.82 -0.02 0.73 16 5 N -0.53 -8.66 4.21 -244.37 -1.03 -9.69 16 6 C 0.02 0.40 8.98 60.07 0.54 0.94 16 7 C 0.12 2.15 5.11 -4.98 -0.03 2.12 16 8 C -0.20 -4.43 4.91 -104.32 -0.51 -4.94 16 9 C -0.09 -2.18 7.87 -39.66 -0.31 -2.49 16 10 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 11 C 0.11 2.99 5.57 -106.82 -0.60 2.39 16 12 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 16 13 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 14 C 0.08 1.92 5.14 -17.35 -0.09 1.83 16 15 N -0.79 -20.64 10.95 55.55 0.61 -20.03 16 16 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 C -0.23 -5.67 9.80 -38.88 -0.38 -6.06 16 21 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 22 C -0.08 -0.77 1.78 -90.62 -0.16 -0.93 16 23 C -0.12 -1.08 4.86 -26.73 -0.13 -1.21 16 24 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 25 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 26 C -0.12 -0.93 5.92 -26.74 -0.16 -1.09 16 27 C -0.11 -1.01 4.85 -26.73 -0.13 -1.14 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.03 7.75 -51.93 -0.40 0.63 16 30 H 0.05 0.50 6.43 -51.93 -0.33 0.16 16 31 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.03 0.37 6.15 -51.93 -0.32 0.05 16 33 H 0.06 0.87 6.37 -51.93 -0.33 0.54 16 34 H 0.08 1.59 5.90 -51.93 -0.31 1.29 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 37 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 38 H 0.08 1.74 7.99 -52.49 -0.42 1.32 16 39 H 0.12 3.12 6.16 -52.48 -0.32 2.79 16 40 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 41 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.62 6.32 -51.93 -0.33 0.30 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 53 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -26.49 396.46 -12.38 -38.87 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -9.71 Total: 4.97 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: -3.20 Total: -33.86 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: -0.42 Total: -29.72 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -26.49 -12.38 -38.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196820137.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.472 kcal (2) G-P(sol) polarization free energy of solvation -26.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds