Wall clock time and date at job start Tue Mar 31 2020 10:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46722 * 2 1 4 4 C 1.53004 * 109.46919 * 119.99740 * 2 1 3 5 5 N 1.46901 * 109.47216 * 294.99833 * 4 2 1 6 6 C 1.46904 * 110.99783 * 293.95798 * 5 4 2 7 7 C 1.46892 * 110.99667 * 170.00228 * 5 4 2 8 8 C 1.50709 * 109.47027 * 190.00131 * 7 5 4 9 9 C 1.38634 * 119.74612 * 269.73168 * 8 7 5 10 10 C 1.37621 * 120.24271 * 179.72305 * 9 8 7 11 11 C 1.40713 * 119.74465 * 0.56144 * 10 9 8 12 12 C 1.41399 * 120.24071 * 179.68524 * 11 10 9 13 13 H 1.08002 * 119.99571 * 204.40719 * 12 11 10 14 14 C 1.39949 * 120.00091 * 24.40552 * 12 11 10 15 15 N 1.30811 * 120.00013 * 17.85639 * 14 12 11 16 16 Si 1.86800 * 119.99699 * 197.85665 * 14 12 11 17 17 H 1.48503 * 109.47451 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47065 * 120.00136 * 16 14 12 19 19 H 1.48506 * 109.47111 * 239.99966 * 16 14 12 20 20 C 1.40714 * 119.51303 * 359.71056 * 11 10 9 21 21 C 1.37611 * 119.74605 * 359.97438 * 20 11 10 22 22 C 1.53003 * 109.46907 * 239.99819 * 2 1 3 23 23 C 1.53001 * 109.46656 * 180.02562 * 22 2 1 24 24 C 1.52999 * 109.46907 * 180.02562 * 23 22 2 25 25 C 1.53002 * 109.47323 * 59.99419 * 24 23 22 26 26 C 1.52991 * 109.47347 * 300.00455 * 25 24 23 27 27 C 1.52997 * 109.47500 * 59.99835 * 26 25 24 28 28 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46796 * 300.00257 * 1 2 3 30 30 H 1.08997 * 109.47362 * 60.00225 * 1 2 3 31 31 H 1.08994 * 109.46993 * 54.99939 * 4 2 1 32 32 H 1.09002 * 109.46512 * 174.99776 * 4 2 1 33 33 H 1.08996 * 109.47138 * 60.00468 * 6 5 4 34 34 H 1.09002 * 109.46367 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.46904 * 299.99230 * 6 5 4 36 36 H 1.09000 * 109.47681 * 310.00007 * 7 5 4 37 37 H 1.09006 * 109.47473 * 70.00523 * 7 5 4 38 38 H 1.07999 * 119.87815 * 359.97190 * 9 8 7 39 39 H 1.08004 * 120.12333 * 180.28058 * 10 9 8 40 40 H 0.97007 * 120.00125 * 180.02562 * 15 14 12 41 41 H 1.08001 * 120.12105 * 179.97438 * 20 11 10 42 42 H 1.07994 * 119.87978 * 180.02562 * 21 20 11 43 43 H 1.09000 * 109.47079 * 299.99832 * 22 2 1 44 44 H 1.08997 * 109.47541 * 60.00001 * 23 22 2 45 45 H 1.09000 * 109.47187 * 299.99701 * 23 22 2 46 46 H 1.08996 * 109.47139 * 180.02562 * 24 23 22 47 47 H 1.09009 * 109.46845 * 299.99889 * 24 23 22 48 48 H 1.09000 * 109.46948 * 60.00422 * 25 24 23 49 49 H 1.08997 * 109.46825 * 179.97438 * 25 24 23 50 50 H 1.08997 * 109.47285 * 179.97438 * 26 25 24 51 51 H 1.09000 * 109.47069 * 299.99892 * 26 25 24 52 52 H 1.08997 * 109.47060 * 59.99458 * 27 26 25 53 53 H 1.08999 * 109.47891 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6514 0.0375 2.4457 6 6 2.3342 1.3375 2.4893 7 6 1.9125 -0.7356 3.6671 8 6 1.2831 -0.0396 4.8463 9 6 2.0137 0.8950 5.5638 10 6 1.4471 1.5408 6.6389 11 6 0.1251 1.2407 7.0161 12 6 -0.4652 1.8931 8.1231 13 1 -1.2796 1.4238 8.6551 14 6 0.0059 3.1467 8.5293 15 7 0.7278 3.8702 7.7128 16 14 -0.3962 3.7870 10.2374 17 1 -1.2204 2.7852 10.9603 18 1 0.8639 4.0238 10.9866 19 1 -1.1513 5.0607 10.1236 20 6 -0.6050 0.2862 6.2840 21 6 -0.0205 -0.3425 5.2085 22 6 2.0400 -0.7213 -1.2493 23 6 3.5700 -0.7218 -1.2489 24 6 4.0801 -1.4426 -2.4984 25 6 3.5705 -0.7205 -3.7474 26 6 2.0406 -0.7200 -3.7477 27 6 1.5305 0.0008 -2.4982 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7197 1.2952 32 1 3.1264 -0.7994 1.2056 33 1 2.0678 1.9176 1.6059 34 1 2.0281 1.8786 3.3847 35 1 3.4126 1.1810 2.5099 36 1 1.4858 -1.7333 3.5639 37 1 2.9883 -0.8150 3.8239 38 1 3.0299 1.1199 5.2756 39 1 2.0165 2.2718 7.1937 40 1 1.0547 4.7390 7.9944 41 1 -1.6202 0.0481 6.5651 42 1 -0.5789 -1.0750 4.6448 43 1 1.6767 -1.7490 -1.2492 44 1 3.9330 -1.2359 -0.3589 45 1 3.9337 0.3057 -1.2487 46 1 5.1700 -1.4434 -2.4979 47 1 3.7163 -2.4702 -2.4990 48 1 3.9342 0.3070 -3.7468 49 1 3.9342 -1.2338 -4.6375 50 1 1.6776 -0.2052 -4.6372 51 1 1.6769 -1.7475 -3.7483 52 1 1.8943 1.0283 -2.4976 53 1 0.4405 0.0008 -2.4981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196820137.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:16 Heat of formation + Delta-G solvation = -28.154106 kcal Electronic energy + Delta-G solvation = -26411.941353 eV Core-core repulsion = 23052.778447 eV Total energy + Delta-G solvation = -3359.162906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.40027 -39.59444 -37.98855 -35.73659 -34.68762 -32.07803 -31.66228 -31.16840 -29.88927 -28.73021 -27.96956 -26.14746 -24.30249 -23.31505 -22.84294 -22.50341 -21.37080 -20.65655 -20.47962 -19.19902 -17.19311 -16.99757 -16.53171 -16.20830 -15.85008 -15.70235 -15.47410 -15.08846 -14.97882 -14.76995 -14.44565 -14.23666 -14.14423 -13.85134 -13.79021 -13.43691 -13.37207 -13.17671 -12.86524 -12.80127 -12.65757 -12.53358 -12.52304 -12.31372 -12.17650 -12.01502 -11.96676 -11.92814 -11.81986 -11.44099 -11.30499 -11.24100 -11.17645 -10.99339 -10.73925 -10.67279 -9.34228 -9.21066 -9.00186 -8.61807 -6.30821 0.96279 1.18799 1.37463 1.49677 1.53044 2.21164 2.68659 3.21940 3.77236 3.81139 3.83076 3.93794 4.03387 4.23128 4.26776 4.34025 4.41526 4.47663 4.49508 4.54141 4.56030 4.61950 4.67121 4.70374 4.71964 4.76350 4.79672 4.82634 4.85347 4.91484 5.02294 5.06042 5.07152 5.14259 5.17214 5.18727 5.25490 5.29279 5.30920 5.37184 5.40104 5.40819 5.47480 5.50848 5.53109 5.64299 5.70594 5.74019 5.99577 6.12924 6.17407 6.32256 6.39676 6.42954 6.73437 6.96990 7.07297 8.34857 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.031119 B = 0.002241 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.570125 B =12490.653562 C =12537.150637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 H 0.061 0.939 4 C 0.060 3.940 5 N -0.542 5.542 6 C 0.031 3.969 7 C 0.125 3.875 8 C -0.191 4.191 9 C -0.094 4.094 10 C -0.190 4.190 11 C 0.078 3.922 12 C -0.502 4.502 13 H 0.072 0.928 14 C 0.034 3.966 15 N -0.826 5.826 16 Si 0.981 3.019 17 H -0.259 1.259 18 H -0.264 1.264 19 H -0.266 1.266 20 C -0.245 4.245 21 C -0.073 4.073 22 C -0.072 4.072 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.114 4.114 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.024 0.976 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.287 0.713 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.062 0.938 52 H 0.055 0.945 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.758 -7.565 -19.745 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 H 0.079 0.921 4 C -0.068 4.068 5 N -0.265 5.265 6 C -0.118 4.118 7 C -0.002 4.002 8 C -0.192 4.192 9 C -0.113 4.113 10 C -0.210 4.210 11 C 0.076 3.924 12 C -0.532 4.532 13 H 0.090 0.910 14 C -0.181 4.181 15 N -0.453 5.453 16 Si 0.802 3.198 17 H -0.182 1.182 18 H -0.189 1.189 19 H -0.191 1.191 20 C -0.264 4.264 21 C -0.091 4.091 22 C -0.091 4.091 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.157 4.157 26 C -0.155 4.155 27 C -0.151 4.151 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.081 0.919 52 H 0.074 0.926 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.370 -7.263 -19.811 21.773 hybrid contribution 0.616 0.573 1.118 1.399 sum 5.986 -6.690 -18.693 20.737 Atomic orbital electron populations 1.21699 0.94994 1.01434 1.01034 1.21123 0.96158 0.99100 0.93106 0.92090 1.22293 0.97962 0.97167 0.89330 1.61971 1.58564 1.04035 1.01961 1.22313 0.95421 0.91989 1.02031 1.20668 0.96691 0.95723 0.87075 1.19273 0.95656 1.03857 1.00434 1.20711 0.98131 0.96581 0.95829 1.21231 0.95705 1.03464 1.00573 1.17958 0.91737 0.90939 0.91782 1.19839 1.17405 1.02902 1.13050 0.90953 1.26749 0.92965 0.96182 1.02159 1.69890 1.28270 1.10598 1.36493 0.85180 0.79169 0.78463 0.76995 1.18250 1.18863 1.19052 1.21158 0.99133 1.05647 1.00480 1.20616 0.94501 0.98466 0.95560 1.21095 0.95117 0.99441 0.93488 1.21643 0.95204 1.00489 0.98041 1.21522 1.00220 0.99379 0.94377 1.21536 0.95742 1.00564 0.97821 1.21523 0.95657 1.00767 0.97548 1.21608 1.00556 0.99001 0.93940 0.92981 0.93865 0.92338 0.90876 0.94466 0.91039 0.93305 0.95787 0.90343 0.95293 0.88370 0.88451 0.90281 0.88895 0.86990 0.91176 0.92197 0.92742 0.91908 0.91901 0.92449 0.91492 0.91646 0.91907 0.92634 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.73 71.98 0.63 -2.39 16 2 C -0.08 -1.60 1.89 -10.79 -0.02 -1.62 16 3 H 0.06 1.40 6.34 -2.39 -0.02 1.39 16 4 C 0.06 1.42 4.13 86.30 0.36 1.78 16 5 N -0.54 -16.68 4.21 -927.04 -3.90 -20.58 16 6 C 0.03 0.97 8.98 127.69 1.15 2.12 16 7 C 0.13 4.19 5.11 85.56 0.44 4.63 16 8 C -0.19 -8.10 4.91 -19.67 -0.10 -8.19 16 9 C -0.09 -4.38 7.87 22.22 0.17 -4.20 16 10 C -0.19 -10.27 8.70 22.73 0.20 -10.07 16 11 C 0.08 4.36 5.57 -21.29 -0.12 4.25 16 12 C -0.50 -28.06 9.05 23.46 0.21 -27.84 16 13 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 14 C 0.03 1.76 5.14 85.26 0.44 2.20 16 15 N -0.83 -44.44 10.95 21.83 0.24 -44.20 16 16 Si 0.98 39.29 29.59 68.60 2.03 41.32 16 17 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 18 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 19 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 20 C -0.24 -12.45 9.80 22.73 0.22 -12.23 16 21 C -0.07 -3.26 9.67 22.22 0.21 -3.05 16 22 C -0.07 -1.22 1.78 -10.79 -0.02 -1.24 16 23 C -0.12 -1.89 4.86 30.59 0.15 -1.74 16 24 C -0.12 -1.61 5.92 30.59 0.18 -1.43 16 25 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 26 C -0.12 -1.54 5.92 30.59 0.18 -1.36 16 27 C -0.11 -1.75 4.85 30.59 0.15 -1.60 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 1.21 7.75 -2.39 -0.02 1.19 16 30 H 0.06 1.16 6.43 -2.39 -0.02 1.14 16 31 H 0.07 1.68 7.93 -2.39 -0.02 1.66 16 32 H 0.04 0.85 6.15 -2.39 -0.01 0.84 16 33 H 0.07 2.05 6.37 -2.39 -0.02 2.03 16 34 H 0.05 1.88 5.90 -2.39 -0.01 1.86 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 2.39 7.87 -2.39 -0.02 2.37 16 37 H 0.03 0.93 8.06 -2.38 -0.02 0.91 16 38 H 0.10 4.17 7.99 -2.91 -0.02 4.15 16 39 H 0.10 5.52 6.16 -2.91 -0.02 5.51 16 40 H 0.29 13.88 8.30 -92.70 -0.77 13.11 16 41 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.02 6.32 -2.39 -0.02 1.01 16 45 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 48 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.07 1.02 6.43 -2.39 -0.02 1.00 16 Total: -1.00 -58.66 396.46 3.83 -54.83 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.85 Total: 31.97 kcal Atomic # 6 Polarization: -67.95 SS G_CDS: 4.62 Total: -63.34 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -3.66 Total: -64.78 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -58.66 3.83 -54.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196820137.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.675 kcal (2) G-P(sol) polarization free energy of solvation -58.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds