Wall clock time and date at job start Tue Mar 31 2020 10:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47315 * 2 1 4 4 C 1.52996 * 109.47218 * 239.99680 * 2 1 3 5 5 N 1.46897 * 109.47147 * 65.00178 * 4 2 1 6 6 C 1.46902 * 111.00130 * 66.04442 * 5 4 2 7 7 C 1.46903 * 111.00132 * 189.99836 * 5 4 2 8 8 C 1.50707 * 109.47031 * 170.00020 * 7 5 4 9 9 C 1.38635 * 119.74865 * 270.25602 * 8 7 5 10 10 C 1.37613 * 120.24483 * 180.26071 * 9 8 7 11 11 C 1.40709 * 119.74954 * 359.46596 * 10 9 8 12 12 C 1.41391 * 120.24881 * 180.29949 * 11 10 9 13 13 H 1.08006 * 120.00159 * 24.38124 * 12 11 10 14 14 C 1.39949 * 120.00394 * 204.37955 * 12 11 10 15 15 N 1.30826 * 119.99793 * 17.83971 * 14 12 11 16 16 Si 1.86793 * 120.00334 * 197.84214 * 14 12 11 17 17 H 1.48504 * 109.47163 * 59.99946 * 16 14 12 18 18 H 1.48493 * 109.47398 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47268 * 300.00028 * 16 14 12 20 20 C 1.40717 * 119.50871 * 0.27696 * 11 10 9 21 21 C 1.37615 * 119.74803 * 359.97438 * 20 11 10 22 22 C 1.53009 * 109.46996 * 119.99686 * 2 1 3 23 23 C 1.52996 * 109.47132 * 300.00047 * 22 2 1 24 24 C 1.52996 * 109.47270 * 179.97438 * 23 22 2 25 25 C 1.53000 * 109.47175 * 59.99859 * 24 23 22 26 26 C 1.53008 * 109.47087 * 300.00517 * 25 24 23 27 27 C 1.52994 * 109.47179 * 59.99801 * 26 25 24 28 28 H 1.08998 * 109.46840 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47174 * 300.00393 * 1 2 3 30 30 H 1.09003 * 109.46893 * 60.00104 * 1 2 3 31 31 H 1.08996 * 109.47465 * 304.99954 * 4 2 1 32 32 H 1.09005 * 109.47142 * 185.00060 * 4 2 1 33 33 H 1.08998 * 109.47432 * 183.95111 * 6 5 4 34 34 H 1.08999 * 109.47259 * 303.95917 * 6 5 4 35 35 H 1.09004 * 109.47016 * 63.95375 * 6 5 4 36 36 H 1.08994 * 109.46989 * 50.00174 * 7 5 4 37 37 H 1.09000 * 109.47199 * 289.99763 * 7 5 4 38 38 H 1.07998 * 119.87355 * 0.02562 * 9 8 7 39 39 H 1.08008 * 120.12380 * 179.73700 * 10 9 8 40 40 H 0.97001 * 120.00110 * 179.97438 * 15 14 12 41 41 H 1.08004 * 120.12753 * 180.02562 * 20 11 10 42 42 H 1.08003 * 119.88271 * 180.02562 * 21 20 11 43 43 H 1.09001 * 109.46832 * 60.00018 * 22 2 1 44 44 H 1.08998 * 109.47387 * 300.00214 * 23 22 2 45 45 H 1.09003 * 109.47235 * 59.99567 * 23 22 2 46 46 H 1.09001 * 109.46871 * 300.00079 * 24 23 22 47 47 H 1.08995 * 109.47299 * 180.02562 * 24 23 22 48 48 H 1.08994 * 109.47461 * 180.02562 * 25 24 23 49 49 H 1.09001 * 109.47041 * 60.00325 * 25 24 23 50 50 H 1.08996 * 109.46595 * 299.99812 * 26 25 24 51 51 H 1.09001 * 109.46683 * 180.02562 * 26 25 24 52 52 H 1.09005 * 109.46877 * 180.02562 * 27 26 25 53 53 H 1.08998 * 109.47455 * 59.99700 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6515 0.0373 -2.4456 6 6 2.3342 1.3373 -2.4894 7 6 1.9126 -0.7359 -3.6671 8 6 1.2831 -0.0399 -4.8463 9 6 -0.0220 -0.3392 -5.2055 10 6 -0.6050 0.2862 -6.2837 11 6 0.1249 1.2409 -7.0157 12 6 -0.4659 1.8946 -8.1215 13 1 -1.5404 1.9833 -8.1855 14 6 0.3415 2.4267 -9.1332 15 7 1.5839 2.0345 -9.2527 16 14 -0.3545 3.6969 -10.3127 17 1 -0.8039 4.8883 -9.5485 18 1 0.6951 4.0990 -11.2831 19 1 -1.5080 3.1138 -11.0438 20 6 1.4471 1.5407 -6.6387 21 6 2.0117 0.8991 -5.5601 22 6 2.0400 -0.7212 1.2494 23 6 1.5300 0.0001 2.4985 24 6 2.0394 -0.7214 3.7478 25 6 3.5694 -0.7221 3.7482 26 6 4.0795 -1.4433 2.4989 27 6 3.5700 -0.7218 1.2497 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7995 -1.2055 33 1 1.9762 1.9070 -3.3470 34 1 2.1241 1.8891 -1.5732 35 1 3.4090 1.1804 -2.5806 36 1 1.4858 -1.7335 -3.5637 37 1 2.9883 -0.8153 -3.8238 38 1 -0.5819 -1.0688 -4.6393 39 1 -1.6205 0.0484 -6.5644 40 1 2.1434 2.4030 -9.9542 41 1 2.0163 2.2721 -7.1932 42 1 3.0262 1.1278 -5.2686 43 1 1.6766 -1.7489 1.2494 44 1 1.8933 1.0277 2.4985 45 1 0.4400 0.0001 2.4985 46 1 1.6757 -1.7490 3.7476 47 1 1.6757 -0.2079 4.6377 48 1 3.9324 -1.2364 4.6379 49 1 3.9331 0.3055 3.7484 50 1 3.7157 -2.4708 2.4987 51 1 5.1695 -1.4441 2.4994 52 1 3.9330 -1.2359 0.3597 53 1 3.9337 0.3058 1.2499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196820138.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:20 Heat of formation + Delta-G solvation = -18.380431 kcal Electronic energy + Delta-G solvation = -26357.831066 eV Core-core repulsion = 22999.091979 eV Total energy + Delta-G solvation = -3358.739088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.50537 -38.02900 -36.65831 -34.26019 -33.30708 -31.06702 -30.32499 -29.27009 -29.01153 -27.15130 -26.77621 -24.66739 -23.15897 -22.56543 -21.47362 -20.84420 -19.99429 -19.66954 -19.52620 -17.25197 -16.11517 -15.41296 -15.31423 -14.78787 -14.77073 -14.46892 -14.29579 -13.97655 -13.79107 -13.49551 -13.31210 -13.20321 -12.80334 -12.60696 -12.45342 -12.30142 -11.91188 -11.77832 -11.58978 -11.45766 -11.31462 -11.30624 -11.24313 -11.15631 -11.09178 -10.96019 -10.86448 -10.64014 -10.51715 -10.38028 -10.26238 -10.01641 -9.95599 -9.49823 -9.33273 -9.08612 -7.84166 -7.37807 -7.24081 -6.73134 -4.31056 2.78307 3.07440 3.10167 3.13240 3.21941 3.95014 4.27758 4.49606 4.54112 4.60161 4.77585 4.87396 4.99742 5.18588 5.20366 5.25532 5.30680 5.34150 5.46878 5.53865 5.58497 5.62714 5.73253 5.77025 5.78340 5.80596 5.87676 5.88139 5.94540 5.95870 6.00197 6.04381 6.07542 6.10105 6.15850 6.23980 6.28187 6.32653 6.42336 6.44241 6.46803 6.52313 6.60795 6.98653 7.10987 7.30933 7.42502 7.53217 7.55765 7.66590 7.94210 8.09560 8.19673 8.34910 8.68082 8.93660 9.02425 10.21367 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.033193 B = 0.002203 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.348998 B =12706.433957 C =12875.960656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 H 0.069 0.931 4 C 0.056 3.944 5 N -0.532 5.532 6 C 0.026 3.974 7 C 0.120 3.880 8 C -0.205 4.205 9 C -0.070 4.070 10 C -0.229 4.229 11 C 0.112 3.888 12 C -0.464 4.464 13 H 0.076 0.924 14 C 0.076 3.924 15 N -0.795 5.795 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.166 4.166 21 C -0.094 4.094 22 C -0.080 4.080 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.118 4.118 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.014 0.986 36 H 0.062 0.938 37 H 0.021 0.979 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.280 0.720 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.058 0.942 52 H 0.064 0.936 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.997 -3.951 20.265 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.072 4.072 5 N -0.255 5.255 6 C -0.123 4.123 7 C -0.006 4.006 8 C -0.206 4.206 9 C -0.088 4.088 10 C -0.248 4.248 11 C 0.109 3.891 12 C -0.493 4.493 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.420 5.420 16 Si 0.731 3.269 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.186 4.186 21 C -0.113 4.113 22 C -0.099 4.099 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.155 4.155 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.134 0.866 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.076 0.924 52 H 0.082 0.918 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.712 -3.848 20.130 20.828 hybrid contribution 0.705 0.386 -0.702 1.068 sum 4.417 -3.462 19.427 20.222 Atomic orbital electron populations 1.21754 0.94616 1.01447 1.01775 1.21183 0.96604 0.99455 0.92852 0.91261 1.22232 0.97384 0.97256 0.90311 1.62074 1.57970 1.03923 1.01548 1.22410 0.95167 0.92117 1.02568 1.20734 0.96575 0.95448 0.87845 1.18842 0.95901 1.05911 0.99976 1.20308 0.93890 0.98552 0.96091 1.20962 1.00053 1.02617 1.01185 1.17606 0.91730 0.88740 0.90997 1.19557 0.94526 1.31687 1.03567 0.90581 1.25903 0.94529 0.95667 0.98049 1.69825 1.07533 1.35334 1.29314 0.86392 0.79496 0.81375 0.79593 1.18854 1.20410 1.19040 1.21273 0.97162 1.02740 0.97388 1.20511 0.97161 0.97248 0.96367 1.21175 0.94879 0.99643 0.94223 1.21624 1.00568 0.99201 0.93807 1.21536 0.95562 1.00713 0.97880 1.21536 0.95880 1.00632 0.97643 1.21534 0.99922 0.99404 0.94817 1.21665 0.95575 1.00689 0.97563 0.93409 0.93547 0.91133 0.91487 0.95280 0.90224 0.92345 0.96747 0.91981 0.96051 0.89584 0.89207 0.90923 0.86630 0.90022 0.91400 0.92180 0.91605 0.92178 0.92352 0.92467 0.92170 0.92171 0.92358 0.91751 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.73 37.16 0.32 -1.29 16 2 C -0.08 -0.91 1.90 -90.62 -0.17 -1.08 16 3 H 0.07 0.82 6.26 -51.93 -0.33 0.49 16 4 C 0.06 0.72 4.13 -3.83 -0.02 0.71 16 5 N -0.53 -8.45 4.21 -244.37 -1.03 -9.48 16 6 C 0.03 0.40 8.93 60.07 0.54 0.94 16 7 C 0.12 2.15 5.11 -4.97 -0.03 2.12 16 8 C -0.20 -4.43 4.91 -104.32 -0.51 -4.94 16 9 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 10 C -0.23 -5.69 9.80 -38.88 -0.38 -6.07 16 11 C 0.11 3.01 5.57 -106.83 -0.60 2.41 16 12 C -0.46 -12.44 9.05 -37.74 -0.34 -12.78 16 13 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 14 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 15 N -0.79 -20.71 10.95 55.55 0.61 -20.10 16 16 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 17 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 20 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 21 C -0.09 -2.18 7.92 -39.66 -0.31 -2.49 16 22 C -0.08 -0.75 1.77 -90.62 -0.16 -0.91 16 23 C -0.11 -0.97 4.85 -26.74 -0.13 -1.10 16 24 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 25 C -0.12 -0.89 5.92 -26.73 -0.16 -1.04 16 26 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 27 C -0.12 -1.06 4.86 -26.73 -0.13 -1.19 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.48 6.43 -51.93 -0.33 0.14 16 30 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 31 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.03 0.37 6.16 -51.93 -0.32 0.05 16 33 H 0.08 1.44 6.16 -51.93 -0.32 1.12 16 34 H 0.06 0.81 6.21 -51.93 -0.32 0.49 16 35 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.06 1.05 7.87 -51.93 -0.41 0.65 16 37 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.09 2.13 8.06 -52.48 -0.42 1.70 16 40 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 41 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 42 H 0.08 1.74 8.02 -52.48 -0.42 1.32 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 52 H 0.06 0.62 6.32 -51.93 -0.33 0.29 16 53 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 396.53 15.07 5.98 5.98 Total: -1.00 -26.48 396.53 -12.39 -38.87 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -9.71 Total: 4.61 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: -3.20 Total: -33.68 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: -0.42 Total: -29.58 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -26.48 -12.39 -38.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196820138.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.489 kcal (2) G-P(sol) polarization free energy of solvation -26.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds