Wall clock time and date at job start Tue Mar 31 2020 10:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47315 * 2 1 4 4 C 1.52996 * 109.47218 * 239.99680 * 2 1 3 5 5 N 1.46897 * 109.47147 * 65.00178 * 4 2 1 6 6 C 1.46902 * 111.00130 * 66.04442 * 5 4 2 7 7 C 1.46903 * 111.00132 * 189.99836 * 5 4 2 8 8 C 1.50707 * 109.47031 * 170.00020 * 7 5 4 9 9 C 1.38635 * 119.74865 * 270.25602 * 8 7 5 10 10 C 1.37613 * 120.24483 * 180.26071 * 9 8 7 11 11 C 1.40709 * 119.74954 * 359.46596 * 10 9 8 12 12 C 1.41391 * 120.24881 * 180.29949 * 11 10 9 13 13 H 1.08006 * 120.00159 * 24.38124 * 12 11 10 14 14 C 1.39949 * 120.00394 * 204.37955 * 12 11 10 15 15 N 1.30826 * 119.99793 * 17.83971 * 14 12 11 16 16 Si 1.86793 * 120.00334 * 197.84214 * 14 12 11 17 17 H 1.48504 * 109.47163 * 59.99946 * 16 14 12 18 18 H 1.48493 * 109.47398 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47268 * 300.00028 * 16 14 12 20 20 C 1.40717 * 119.50871 * 0.27696 * 11 10 9 21 21 C 1.37615 * 119.74803 * 359.97438 * 20 11 10 22 22 C 1.53009 * 109.46996 * 119.99686 * 2 1 3 23 23 C 1.52996 * 109.47132 * 300.00047 * 22 2 1 24 24 C 1.52996 * 109.47270 * 179.97438 * 23 22 2 25 25 C 1.53000 * 109.47175 * 59.99859 * 24 23 22 26 26 C 1.53008 * 109.47087 * 300.00517 * 25 24 23 27 27 C 1.52994 * 109.47179 * 59.99801 * 26 25 24 28 28 H 1.08998 * 109.46840 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47174 * 300.00393 * 1 2 3 30 30 H 1.09003 * 109.46893 * 60.00104 * 1 2 3 31 31 H 1.08996 * 109.47465 * 304.99954 * 4 2 1 32 32 H 1.09005 * 109.47142 * 185.00060 * 4 2 1 33 33 H 1.08998 * 109.47432 * 183.95111 * 6 5 4 34 34 H 1.08999 * 109.47259 * 303.95917 * 6 5 4 35 35 H 1.09004 * 109.47016 * 63.95375 * 6 5 4 36 36 H 1.08994 * 109.46989 * 50.00174 * 7 5 4 37 37 H 1.09000 * 109.47199 * 289.99763 * 7 5 4 38 38 H 1.07998 * 119.87355 * 0.02562 * 9 8 7 39 39 H 1.08008 * 120.12380 * 179.73700 * 10 9 8 40 40 H 0.97001 * 120.00110 * 179.97438 * 15 14 12 41 41 H 1.08004 * 120.12753 * 180.02562 * 20 11 10 42 42 H 1.08003 * 119.88271 * 180.02562 * 21 20 11 43 43 H 1.09001 * 109.46832 * 60.00018 * 22 2 1 44 44 H 1.08998 * 109.47387 * 300.00214 * 23 22 2 45 45 H 1.09003 * 109.47235 * 59.99567 * 23 22 2 46 46 H 1.09001 * 109.46871 * 300.00079 * 24 23 22 47 47 H 1.08995 * 109.47299 * 180.02562 * 24 23 22 48 48 H 1.08994 * 109.47461 * 180.02562 * 25 24 23 49 49 H 1.09001 * 109.47041 * 60.00325 * 25 24 23 50 50 H 1.08996 * 109.46595 * 299.99812 * 26 25 24 51 51 H 1.09001 * 109.46683 * 180.02562 * 26 25 24 52 52 H 1.09005 * 109.46877 * 180.02562 * 27 26 25 53 53 H 1.08998 * 109.47455 * 59.99700 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6515 0.0373 -2.4456 6 6 2.3342 1.3373 -2.4894 7 6 1.9126 -0.7359 -3.6671 8 6 1.2831 -0.0399 -4.8463 9 6 -0.0220 -0.3392 -5.2055 10 6 -0.6050 0.2862 -6.2837 11 6 0.1249 1.2409 -7.0157 12 6 -0.4659 1.8946 -8.1215 13 1 -1.5404 1.9833 -8.1855 14 6 0.3415 2.4267 -9.1332 15 7 1.5839 2.0345 -9.2527 16 14 -0.3545 3.6969 -10.3127 17 1 -0.8039 4.8883 -9.5485 18 1 0.6951 4.0990 -11.2831 19 1 -1.5080 3.1138 -11.0438 20 6 1.4471 1.5407 -6.6387 21 6 2.0117 0.8991 -5.5601 22 6 2.0400 -0.7212 1.2494 23 6 1.5300 0.0001 2.4985 24 6 2.0394 -0.7214 3.7478 25 6 3.5694 -0.7221 3.7482 26 6 4.0795 -1.4433 2.4989 27 6 3.5700 -0.7218 1.2497 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7995 -1.2055 33 1 1.9762 1.9070 -3.3470 34 1 2.1241 1.8891 -1.5732 35 1 3.4090 1.1804 -2.5806 36 1 1.4858 -1.7335 -3.5637 37 1 2.9883 -0.8153 -3.8238 38 1 -0.5819 -1.0688 -4.6393 39 1 -1.6205 0.0484 -6.5644 40 1 2.1434 2.4030 -9.9542 41 1 2.0163 2.2721 -7.1932 42 1 3.0262 1.1278 -5.2686 43 1 1.6766 -1.7489 1.2494 44 1 1.8933 1.0277 2.4985 45 1 0.4400 0.0001 2.4985 46 1 1.6757 -1.7490 3.7476 47 1 1.6757 -0.2079 4.6377 48 1 3.9324 -1.2364 4.6379 49 1 3.9331 0.3055 3.7484 50 1 3.7157 -2.4708 2.4987 51 1 5.1695 -1.4441 2.4994 52 1 3.9330 -1.2359 0.3597 53 1 3.9337 0.3058 1.2499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196820138.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:19 Heat of formation + Delta-G solvation = -28.084513 kcal Electronic energy + Delta-G solvation = -26358.251867 eV Core-core repulsion = 22999.091979 eV Total energy + Delta-G solvation = -3359.159888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.39919 -39.59197 -37.98856 -35.73556 -34.68372 -32.07612 -31.65981 -31.16591 -29.88708 -28.72833 -27.96479 -26.14480 -24.30181 -23.31269 -22.84057 -22.50264 -21.37503 -20.65410 -20.47486 -19.19542 -17.18240 -17.00654 -16.53799 -16.20071 -15.84732 -15.70584 -15.47112 -15.08817 -14.97553 -14.76556 -14.43835 -14.24951 -14.11530 -13.86399 -13.78492 -13.44841 -13.36013 -13.17609 -12.90783 -12.80151 -12.56505 -12.56123 -12.45536 -12.33077 -12.16744 -12.09577 -11.98345 -11.93135 -11.80203 -11.43670 -11.30757 -11.23694 -11.16621 -10.97667 -10.74102 -10.67232 -9.34433 -9.20750 -9.00600 -8.62181 -6.30908 0.97332 1.19009 1.37301 1.48417 1.53577 2.21022 2.69301 3.21269 3.77559 3.81354 3.83227 3.93940 4.03349 4.22824 4.26947 4.34102 4.41670 4.47984 4.49713 4.54133 4.56490 4.62222 4.67295 4.70555 4.72188 4.77062 4.80258 4.82760 4.86090 4.91662 5.02723 5.06062 5.07108 5.14680 5.16978 5.18699 5.25697 5.29640 5.31093 5.37410 5.40248 5.40989 5.47753 5.50856 5.53417 5.64787 5.70953 5.73969 5.99538 6.12746 6.17503 6.31630 6.39440 6.42871 6.73166 6.96834 7.07309 8.34582 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.033193 B = 0.002203 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.348998 B =12706.433957 C =12875.960656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 H 0.063 0.937 4 C 0.059 3.941 5 N -0.540 5.540 6 C 0.030 3.970 7 C 0.126 3.874 8 C -0.191 4.191 9 C -0.073 4.073 10 C -0.245 4.245 11 C 0.078 3.922 12 C -0.503 4.503 13 H 0.073 0.927 14 C 0.034 3.966 15 N -0.827 5.827 16 Si 0.981 3.019 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.190 4.190 21 C -0.094 4.094 22 C -0.073 4.073 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.116 4.116 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.021 0.979 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.062 0.938 52 H 0.058 0.942 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.345 -4.524 22.176 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.094 4.094 3 H 0.081 0.919 4 C -0.068 4.068 5 N -0.264 5.264 6 C -0.118 4.118 7 C -0.001 4.001 8 C -0.192 4.192 9 C -0.091 4.091 10 C -0.265 4.265 11 C 0.076 3.924 12 C -0.533 4.533 13 H 0.091 0.909 14 C -0.180 4.180 15 N -0.453 5.453 16 Si 0.802 3.198 17 H -0.186 1.186 18 H -0.191 1.191 19 H -0.184 1.184 20 C -0.210 4.210 21 C -0.112 4.112 22 C -0.092 4.092 23 C -0.151 4.151 24 C -0.155 4.155 25 C -0.156 4.156 26 C -0.155 4.155 27 C -0.154 4.154 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.040 0.960 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.081 0.919 52 H 0.077 0.923 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.063 -4.435 22.062 22.867 hybrid contribution 0.639 0.474 -1.141 1.391 sum 4.702 -3.961 20.921 21.805 Atomic orbital electron populations 1.21700 0.94919 1.01409 1.01134 1.21123 0.96211 0.99139 0.92949 0.91855 1.22289 0.97934 0.97189 0.89421 1.61980 1.58508 1.04085 1.01789 1.22335 0.95392 0.91929 1.02155 1.20653 0.96575 0.95714 0.87194 1.19262 0.95348 1.04264 1.00343 1.20611 0.94483 0.98554 0.95481 1.21161 1.00398 1.02835 1.02057 1.17949 0.92571 0.89892 0.91966 1.19792 0.94705 1.33964 1.04826 0.90929 1.26753 0.94734 0.97092 0.99445 1.69881 1.08750 1.36362 1.30306 0.85271 0.78989 0.78286 0.77263 1.18598 1.19138 1.18367 1.21234 0.97290 1.03687 0.98761 1.20705 0.97982 0.97036 0.95507 1.21098 0.95086 0.99433 0.93579 1.21604 1.00572 0.99027 0.93852 1.21527 0.95639 1.00752 0.97614 1.21538 0.95762 1.00580 0.97768 1.21523 1.00210 0.99363 0.94447 1.21641 0.95241 1.00515 0.97973 0.93126 0.92275 0.93671 0.91038 0.94557 0.93124 0.90649 0.96025 0.90551 0.95498 0.87004 0.88880 0.90243 0.88449 0.88399 0.91309 0.92512 0.91572 0.91995 0.91613 0.91551 0.92370 0.91990 0.91943 0.92294 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.73 71.98 0.63 -2.26 16 2 C -0.08 -1.52 1.90 -10.79 -0.02 -1.54 16 3 H 0.06 1.37 6.26 -2.39 -0.01 1.36 16 4 C 0.06 1.38 4.13 86.30 0.36 1.74 16 5 N -0.54 -16.19 4.21 -927.05 -3.90 -20.09 16 6 C 0.03 0.90 8.93 127.69 1.14 2.04 16 7 C 0.13 4.22 5.11 85.56 0.44 4.66 16 8 C -0.19 -8.11 4.91 -19.67 -0.10 -8.21 16 9 C -0.07 -3.26 9.67 22.22 0.21 -3.04 16 10 C -0.24 -12.47 9.80 22.73 0.22 -12.25 16 11 C 0.08 4.39 5.57 -21.29 -0.12 4.27 16 12 C -0.50 -28.09 9.05 23.46 0.21 -27.88 16 13 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 14 C 0.03 1.78 5.14 85.26 0.44 2.22 16 15 N -0.83 -44.42 10.95 21.83 0.24 -44.18 16 16 Si 0.98 39.26 29.59 68.60 2.03 41.29 16 17 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 18 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 20 C -0.19 -10.28 8.70 22.73 0.20 -10.08 16 21 C -0.09 -4.37 7.92 22.22 0.18 -4.20 16 22 C -0.07 -1.19 1.77 -10.79 -0.02 -1.21 16 23 C -0.11 -1.67 4.85 30.59 0.15 -1.52 16 24 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 25 C -0.12 -1.48 5.92 30.60 0.18 -1.30 16 26 C -0.12 -1.59 5.92 30.60 0.18 -1.41 16 27 C -0.12 -1.84 4.86 30.59 0.15 -1.69 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.10 6.43 -2.38 -0.02 1.09 16 30 H 0.04 1.20 7.75 -2.39 -0.02 1.18 16 31 H 0.07 1.63 7.93 -2.39 -0.02 1.62 16 32 H 0.04 0.82 6.16 -2.38 -0.01 0.81 16 33 H 0.05 1.82 6.16 -2.39 -0.01 1.80 16 34 H 0.07 1.99 6.21 -2.39 -0.01 1.97 16 35 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 2.37 7.87 -2.39 -0.02 2.36 16 37 H 0.03 0.89 8.06 -2.39 -0.02 0.87 16 38 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.09 4.53 8.06 -2.91 -0.02 4.50 16 40 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 41 H 0.10 5.53 6.16 -2.91 -0.02 5.51 16 42 H 0.10 4.17 8.02 -2.91 -0.02 4.14 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 0.97 6.43 -2.39 -0.02 0.96 16 46 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 47 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.06 1.00 6.32 -2.38 -0.02 0.98 16 53 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -58.41 396.53 3.83 -54.58 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.85 Total: 31.38 kcal Atomic # 6 Polarization: -67.59 SS G_CDS: 4.61 Total: -62.98 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -3.66 Total: -64.27 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -58.41 3.83 -54.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196820138.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.500 kcal (2) G-P(sol) polarization free energy of solvation -58.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds