Wall clock time and date at job start Tue Mar 31 2020 10:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47082 * 2 1 4 4 C 1.53002 * 109.46806 * 120.00122 * 2 1 3 5 5 C 1.50702 * 109.46928 * 184.99856 * 4 2 1 6 6 C 1.38258 * 120.11133 * 90.00368 * 5 4 2 7 7 C 1.37940 * 119.77090 * 180.14659 * 6 5 4 8 8 C 1.38908 * 120.54492 * 0.03024 * 7 6 5 9 9 C 1.37666 * 119.68124 * 359.68132 * 8 7 6 10 10 C 1.37933 * 120.11408 * 269.72874 * 5 4 2 11 11 C 1.50624 * 122.55742 * 180.75450 * 9 8 7 12 12 C 1.52733 * 110.57988 * 341.90259 * 11 9 8 13 13 C 1.53313 * 108.39149 * 51.18844 * 12 11 9 14 14 C 1.50624 * 117.76220 * 179.31915 * 8 7 6 15 15 N 1.46902 * 109.46968 * 240.00159 * 2 1 3 16 16 C 1.46896 * 111.00203 * 85.00475 * 15 2 1 17 17 C 1.53000 * 109.47220 * 180.02562 * 16 15 2 18 18 C 1.53000 * 109.46739 * 299.99573 * 17 16 15 19 19 C 1.52993 * 109.47219 * 59.99663 * 17 16 15 20 20 C 1.50700 * 109.47088 * 179.97438 * 17 16 15 21 21 H 1.08004 * 119.99892 * 1.22992 * 20 17 16 22 22 C 1.37877 * 120.00036 * 181.23592 * 20 17 16 23 23 N 1.31509 * 119.99789 * 194.11691 * 22 20 17 24 24 Si 1.86794 * 119.99900 * 14.11266 * 22 20 17 25 25 H 1.48501 * 109.47226 * 84.53684 * 24 22 20 26 26 H 1.48500 * 109.47139 * 204.53685 * 24 22 20 27 27 H 1.48499 * 109.47441 * 324.53623 * 24 22 20 28 28 H 1.09003 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47262 * 300.00161 * 1 2 3 30 30 H 1.09003 * 109.46672 * 59.99818 * 1 2 3 31 31 H 1.08997 * 109.47042 * 305.00036 * 4 2 1 32 32 H 1.09010 * 109.46985 * 65.00181 * 4 2 1 33 33 H 1.08001 * 120.11462 * 0.11774 * 6 5 4 34 34 H 1.08001 * 119.72218 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.73199 * 359.97438 * 10 5 4 36 36 H 1.08998 * 109.25365 * 102.18598 * 11 9 8 37 37 H 1.09007 * 109.25380 * 221.61682 * 11 9 8 38 38 H 1.09004 * 109.68109 * 170.91966 * 12 11 9 39 39 H 1.09000 * 109.67680 * 291.46586 * 12 11 9 40 40 H 1.09005 * 109.67523 * 49.93370 * 13 12 11 41 41 H 1.08999 * 109.67900 * 170.46579 * 13 12 11 42 42 H 1.08995 * 109.25383 * 282.66199 * 14 8 7 43 43 H 1.09001 * 109.24880 * 42.08517 * 14 8 7 44 44 H 1.00903 * 110.99827 * 208.95735 * 15 2 1 45 45 H 1.09004 * 109.46834 * 300.00006 * 16 15 2 46 46 H 1.08997 * 109.47475 * 59.99464 * 16 15 2 47 47 H 1.09001 * 109.47495 * 69.52985 * 18 17 16 48 48 H 1.08996 * 109.46909 * 189.52768 * 18 17 16 49 49 H 1.09008 * 109.47161 * 309.52909 * 18 17 16 50 50 H 1.08999 * 109.47257 * 60.00380 * 19 17 16 51 51 H 1.09007 * 109.47072 * 180.02562 * 19 17 16 52 52 H 1.08997 * 109.47538 * 299.99685 * 19 17 16 53 53 H 0.97004 * 119.99893 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 6 4.1349 0.4483 1.9679 7 6 5.5103 0.5403 2.0191 8 6 6.3054 -0.4267 1.4171 9 6 5.7149 -1.4886 0.7700 10 6 4.3297 -1.5812 0.7224 11 6 6.5140 -2.5816 0.1101 12 6 7.9526 -2.1266 -0.1269 13 6 8.5083 -1.5737 1.1906 14 6 7.7998 -0.2561 1.4979 15 7 2.0197 -0.6925 -1.1995 16 6 2.0826 0.2226 -2.3469 17 6 2.5951 -0.5332 -3.5745 18 6 3.9922 -1.0863 -3.2862 19 6 1.6452 -1.6888 -3.8952 20 6 2.6591 0.4055 -4.7517 21 1 2.3826 1.4425 -4.6311 22 6 3.0703 -0.0597 -5.9828 23 7 3.3933 0.7907 -6.9326 24 14 3.1690 -1.8976 -6.3014 25 1 1.8321 -2.4025 -6.7052 26 1 4.1462 -2.1598 -7.3884 27 1 3.6071 -2.5918 -5.0639 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6053 -0.2618 2.1369 32 1 1.7516 -1.7716 1.2055 33 1 3.5234 1.2046 2.4375 34 1 5.9727 1.3710 2.5314 35 1 3.8657 -2.4141 0.2150 36 1 6.5167 -3.4625 0.7521 37 1 6.0552 -2.8355 -0.8456 38 1 8.5564 -2.9734 -0.4535 39 1 7.9702 -1.3472 -0.8886 40 1 8.3235 -2.2862 1.9946 41 1 9.5800 -1.4001 1.0928 42 1 8.1149 0.4981 0.7769 43 1 8.0703 0.0719 2.5016 44 1 2.9173 -1.1206 -1.0288 45 1 1.0872 0.6164 -2.5525 46 1 2.7590 1.0462 -2.1182 47 1 3.9211 -1.8879 -2.5510 48 1 4.4260 -1.4755 -4.2072 49 1 4.6249 -0.2895 -2.8949 50 1 0.6499 -1.2947 -4.1007 51 1 2.0107 -2.2275 -4.7696 52 1 1.5986 -2.3679 -3.0439 53 1 3.6830 0.4634 -7.7986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206224295.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:45 Heat of formation + Delta-G solvation = 4.580261 kcal Electronic energy + Delta-G solvation = -27794.809402 eV Core-core repulsion = 24437.065964 eV Total energy + Delta-G solvation = -3357.743437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.21229 -37.92862 -36.44056 -34.94919 -32.61235 -31.96893 -30.92519 -29.44390 -29.06249 -26.35960 -26.12052 -25.12075 -24.17402 -23.42395 -22.41816 -21.88246 -20.23054 -19.03526 -18.67087 -16.24728 -16.02540 -15.81714 -15.55503 -15.45772 -14.98232 -14.58553 -14.28019 -13.98573 -13.90105 -13.36767 -13.11429 -13.08418 -12.82590 -12.70574 -12.61825 -12.33582 -12.18516 -12.06298 -11.92312 -11.79755 -11.65312 -11.53345 -11.30954 -11.20092 -10.99704 -10.94739 -10.51259 -10.48423 -10.31025 -10.17175 -10.00274 -9.91599 -9.79169 -8.91335 -8.67810 -8.49681 -8.35983 -8.30666 -7.78170 -6.04142 -3.99131 1.37678 1.42369 3.35356 3.44428 3.47918 3.72477 4.47822 4.53267 4.59174 4.69272 4.78637 4.83029 4.96733 5.03331 5.10252 5.18006 5.29209 5.33351 5.41435 5.44418 5.48258 5.53062 5.56597 5.69755 5.74182 5.78944 5.86210 5.91541 5.95633 5.96657 6.00328 6.06764 6.12986 6.17213 6.21059 6.21798 6.29949 6.35923 6.48052 6.53288 6.60661 6.65609 6.70376 6.71213 6.73573 6.91070 6.97792 7.07276 7.08080 7.42075 7.63300 7.65069 7.90115 8.05248 8.60242 9.00953 9.62413 11.09396 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.004716 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.169797 B = 5935.555929 C = 7543.484540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.086 3.914 3 H 0.039 0.961 4 C -0.083 4.083 5 C -0.083 4.083 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.083 4.083 9 C -0.068 4.068 10 C -0.117 4.117 11 C -0.083 4.083 12 C -0.121 4.121 13 C -0.118 4.118 14 C -0.080 4.080 15 N -0.688 5.688 16 C 0.086 3.914 17 C 0.041 3.959 18 C -0.139 4.139 19 C -0.134 4.134 20 C -0.510 4.510 21 H 0.070 0.930 22 C 0.073 3.927 23 N -0.898 5.898 24 Si 0.888 3.112 25 H -0.288 1.288 26 H -0.309 1.309 27 H -0.248 1.248 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.339 0.661 45 H 0.062 0.938 46 H 0.019 0.981 47 H 0.024 0.976 48 H 0.052 0.948 49 H 0.037 0.963 50 H 0.044 0.956 51 H 0.029 0.971 52 H 0.042 0.958 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 -5.021 20.508 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.057 0.943 4 C -0.120 4.120 5 C -0.083 4.083 6 C -0.138 4.138 7 C -0.137 4.137 8 C -0.083 4.083 9 C -0.068 4.068 10 C -0.135 4.135 11 C -0.120 4.120 12 C -0.159 4.159 13 C -0.156 4.156 14 C -0.117 4.117 15 N -0.323 5.323 16 C -0.043 4.043 17 C 0.039 3.961 18 C -0.197 4.197 19 C -0.190 4.190 20 C -0.548 4.548 21 H 0.088 0.912 22 C -0.129 4.129 23 N -0.536 5.536 24 Si 0.721 3.279 25 H -0.215 1.215 26 H -0.238 1.238 27 H -0.174 1.174 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.160 0.840 45 H 0.081 0.919 46 H 0.037 0.963 47 H 0.043 0.957 48 H 0.071 0.929 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.047 0.953 52 H 0.061 0.939 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.705 -5.225 20.159 21.350 hybrid contribution 0.707 -0.218 -0.215 0.771 sum 5.413 -5.443 19.944 21.370 Atomic orbital electron populations 1.21770 0.94741 1.02054 1.00928 1.21453 0.95534 0.95854 0.89555 0.94255 1.20835 0.90647 1.02239 0.98318 1.19834 0.95749 0.94977 0.97762 1.20908 0.94638 0.97959 1.00260 1.21078 0.93678 0.98575 1.00367 1.19544 0.95350 0.94849 0.98549 1.19568 0.93522 0.95850 0.97846 1.21108 0.92951 0.99358 1.00067 1.20491 0.94885 0.96070 1.00554 1.21550 0.95507 1.01150 0.97650 1.21531 0.99311 0.96841 0.97886 1.20450 0.91077 0.98267 1.01869 1.60778 1.33729 1.33870 1.03898 1.21957 0.99654 0.92923 0.89727 1.18458 0.91024 0.93342 0.93228 1.22256 0.99300 0.98335 0.99777 1.22150 0.99837 0.98567 0.98479 1.20871 1.45195 0.96544 0.92172 0.91197 1.24974 0.94122 0.97548 0.96244 1.69971 1.44355 1.34389 1.04843 0.87262 0.76836 0.87123 0.76698 1.21542 1.23830 1.17431 0.92200 0.93323 0.92406 0.90762 0.90309 0.86396 0.86513 0.85873 0.90859 0.90336 0.91509 0.91300 0.91827 0.91642 0.90699 0.91153 0.84000 0.91949 0.96282 0.95709 0.92899 0.94363 0.93667 0.95275 0.93877 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.42 37.16 0.35 -1.43 16 2 C 0.09 1.23 2.64 -67.71 -0.18 1.05 16 3 H 0.04 0.61 7.80 -51.93 -0.40 0.20 16 4 C -0.08 -0.99 4.98 -27.88 -0.14 -1.13 16 5 C -0.08 -1.07 4.83 -104.73 -0.51 -1.57 16 6 C -0.12 -1.46 9.71 -39.68 -0.39 -1.84 16 7 C -0.12 -1.41 9.61 -39.44 -0.38 -1.78 16 8 C -0.08 -1.00 5.74 -104.62 -0.60 -1.60 16 9 C -0.07 -0.86 5.74 -104.62 -0.60 -1.46 16 10 C -0.12 -1.54 7.62 -39.44 -0.30 -1.84 16 11 C -0.08 -0.92 5.67 -28.06 -0.16 -1.08 16 12 C -0.12 -1.22 5.98 -26.71 -0.16 -1.38 16 13 C -0.12 -1.05 5.98 -26.71 -0.16 -1.21 16 14 C -0.08 -0.78 5.67 -28.06 -0.16 -0.94 16 15 N -0.69 -11.72 5.53 -106.72 -0.59 -12.31 16 16 C 0.09 1.76 4.37 -3.83 -0.02 1.75 16 17 C 0.04 0.95 0.57 -155.66 -0.09 0.86 16 18 C -0.14 -3.07 7.24 37.16 0.27 -2.80 16 19 C -0.13 -2.99 7.54 37.15 0.28 -2.71 16 20 C -0.51 -14.31 8.62 -34.44 -0.30 -14.61 16 21 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 22 C 0.07 2.11 5.32 -17.82 -0.09 2.01 16 23 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 24 Si 0.89 22.39 22.79 -169.99 -3.87 18.52 16 25 H -0.29 -7.25 7.10 56.52 0.40 -6.85 16 26 H -0.31 -7.91 7.11 56.52 0.40 -7.51 16 27 H -0.25 -5.81 4.65 56.52 0.26 -5.54 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.82 7.45 -51.93 -0.39 0.44 16 31 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 32 H 0.08 0.92 8.09 -51.92 -0.42 0.50 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.12 1.14 8.05 -52.49 -0.42 0.72 16 35 H 0.12 1.59 7.54 -52.48 -0.40 1.19 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.93 8.13 -51.92 -0.42 0.51 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.78 8.10 -51.93 -0.42 0.35 16 40 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 44 H 0.34 5.70 3.79 -39.29 -0.15 5.55 16 45 H 0.06 1.31 7.44 -51.93 -0.39 0.92 16 46 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 47 H 0.02 0.47 7.06 -51.93 -0.37 0.11 16 48 H 0.05 1.23 4.30 -51.93 -0.22 1.01 16 49 H 0.04 0.83 8.12 -51.92 -0.42 0.41 16 50 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.03 0.68 2.26 -51.92 -0.12 0.56 16 52 H 0.04 0.87 7.60 -51.93 -0.39 0.48 16 53 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -30.41 387.79 -10.86 -41.27 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -9.69 Total: 5.40 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -3.32 Total: -31.74 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.18 Total: -39.29 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -3.87 Total: 18.52 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.41 -10.86 -41.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206224295.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.847 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds