Wall clock time and date at job start Tue Mar 31 2020 10:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47082 * 2 1 4 4 C 1.53002 * 109.46806 * 120.00122 * 2 1 3 5 5 C 1.50702 * 109.46928 * 184.99856 * 4 2 1 6 6 C 1.38258 * 120.11133 * 90.00368 * 5 4 2 7 7 C 1.37940 * 119.77090 * 180.14659 * 6 5 4 8 8 C 1.38908 * 120.54492 * 0.03024 * 7 6 5 9 9 C 1.37666 * 119.68124 * 359.68132 * 8 7 6 10 10 C 1.37933 * 120.11408 * 269.72874 * 5 4 2 11 11 C 1.50624 * 122.55742 * 180.75450 * 9 8 7 12 12 C 1.52733 * 110.57988 * 341.90259 * 11 9 8 13 13 C 1.53313 * 108.39149 * 51.18844 * 12 11 9 14 14 C 1.50624 * 117.76220 * 179.31915 * 8 7 6 15 15 N 1.46902 * 109.46968 * 240.00159 * 2 1 3 16 16 C 1.46896 * 111.00203 * 85.00475 * 15 2 1 17 17 C 1.53000 * 109.47220 * 180.02562 * 16 15 2 18 18 C 1.53000 * 109.46739 * 299.99573 * 17 16 15 19 19 C 1.52993 * 109.47219 * 59.99663 * 17 16 15 20 20 C 1.50700 * 109.47088 * 179.97438 * 17 16 15 21 21 H 1.08004 * 119.99892 * 1.22992 * 20 17 16 22 22 C 1.37877 * 120.00036 * 181.23592 * 20 17 16 23 23 N 1.31509 * 119.99789 * 194.11691 * 22 20 17 24 24 Si 1.86794 * 119.99900 * 14.11266 * 22 20 17 25 25 H 1.48501 * 109.47226 * 84.53684 * 24 22 20 26 26 H 1.48500 * 109.47139 * 204.53685 * 24 22 20 27 27 H 1.48499 * 109.47441 * 324.53623 * 24 22 20 28 28 H 1.09003 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47262 * 300.00161 * 1 2 3 30 30 H 1.09003 * 109.46672 * 59.99818 * 1 2 3 31 31 H 1.08997 * 109.47042 * 305.00036 * 4 2 1 32 32 H 1.09010 * 109.46985 * 65.00181 * 4 2 1 33 33 H 1.08001 * 120.11462 * 0.11774 * 6 5 4 34 34 H 1.08001 * 119.72218 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.73199 * 359.97438 * 10 5 4 36 36 H 1.08998 * 109.25365 * 102.18598 * 11 9 8 37 37 H 1.09007 * 109.25380 * 221.61682 * 11 9 8 38 38 H 1.09004 * 109.68109 * 170.91966 * 12 11 9 39 39 H 1.09000 * 109.67680 * 291.46586 * 12 11 9 40 40 H 1.09005 * 109.67523 * 49.93370 * 13 12 11 41 41 H 1.08999 * 109.67900 * 170.46579 * 13 12 11 42 42 H 1.08995 * 109.25383 * 282.66199 * 14 8 7 43 43 H 1.09001 * 109.24880 * 42.08517 * 14 8 7 44 44 H 1.00903 * 110.99827 * 208.95735 * 15 2 1 45 45 H 1.09004 * 109.46834 * 300.00006 * 16 15 2 46 46 H 1.08997 * 109.47475 * 59.99464 * 16 15 2 47 47 H 1.09001 * 109.47495 * 69.52985 * 18 17 16 48 48 H 1.08996 * 109.46909 * 189.52768 * 18 17 16 49 49 H 1.09008 * 109.47161 * 309.52909 * 18 17 16 50 50 H 1.08999 * 109.47257 * 60.00380 * 19 17 16 51 51 H 1.09007 * 109.47072 * 180.02562 * 19 17 16 52 52 H 1.08997 * 109.47538 * 299.99685 * 19 17 16 53 53 H 0.97004 * 119.99893 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 6 4.1349 0.4483 1.9679 7 6 5.5103 0.5403 2.0191 8 6 6.3054 -0.4267 1.4171 9 6 5.7149 -1.4886 0.7700 10 6 4.3297 -1.5812 0.7224 11 6 6.5140 -2.5816 0.1101 12 6 7.9526 -2.1266 -0.1269 13 6 8.5083 -1.5737 1.1906 14 6 7.7998 -0.2561 1.4979 15 7 2.0197 -0.6925 -1.1995 16 6 2.0826 0.2226 -2.3469 17 6 2.5951 -0.5332 -3.5745 18 6 3.9922 -1.0863 -3.2862 19 6 1.6452 -1.6888 -3.8952 20 6 2.6591 0.4055 -4.7517 21 1 2.3826 1.4425 -4.6311 22 6 3.0703 -0.0597 -5.9828 23 7 3.3933 0.7907 -6.9326 24 14 3.1690 -1.8976 -6.3014 25 1 1.8321 -2.4025 -6.7052 26 1 4.1462 -2.1598 -7.3884 27 1 3.6071 -2.5918 -5.0639 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6053 -0.2618 2.1369 32 1 1.7516 -1.7716 1.2055 33 1 3.5234 1.2046 2.4375 34 1 5.9727 1.3710 2.5314 35 1 3.8657 -2.4141 0.2150 36 1 6.5167 -3.4625 0.7521 37 1 6.0552 -2.8355 -0.8456 38 1 8.5564 -2.9734 -0.4535 39 1 7.9702 -1.3472 -0.8886 40 1 8.3235 -2.2862 1.9946 41 1 9.5800 -1.4001 1.0928 42 1 8.1149 0.4981 0.7769 43 1 8.0703 0.0719 2.5016 44 1 2.9173 -1.1206 -1.0288 45 1 1.0872 0.6164 -2.5525 46 1 2.7590 1.0462 -2.1182 47 1 3.9211 -1.8879 -2.5510 48 1 4.4260 -1.4755 -4.2072 49 1 4.6249 -0.2895 -2.8949 50 1 0.6499 -1.2947 -4.1007 51 1 2.0107 -2.2275 -4.7696 52 1 1.5986 -2.3679 -3.0439 53 1 3.6830 0.4634 -7.7986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206224295.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:45 Heat of formation + Delta-G solvation = -10.892306 kcal Electronic energy + Delta-G solvation = -27795.480343 eV Core-core repulsion = 24437.065964 eV Total energy + Delta-G solvation = -3358.414378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.11220 -39.30776 -37.70364 -36.19372 -34.02271 -33.44096 -32.13450 -30.66752 -29.93466 -27.95967 -27.32500 -27.05700 -25.89929 -24.30291 -23.28546 -22.80218 -21.34951 -20.58986 -19.87620 -18.08792 -17.41280 -17.08006 -16.80843 -16.53018 -16.29993 -15.72936 -15.30344 -15.05151 -14.89124 -14.75857 -14.65559 -14.51401 -14.25123 -13.99239 -13.83729 -13.70522 -13.53785 -13.38721 -13.15128 -12.98507 -12.82650 -12.68624 -12.40690 -12.34593 -12.21987 -11.97020 -11.89606 -11.79834 -11.75819 -11.65988 -11.57313 -11.28535 -11.10887 -10.93766 -10.57814 -10.32222 -9.60694 -9.26299 -9.21565 -8.30016 -6.28939 0.45316 0.50021 1.35435 1.37085 1.48830 2.34984 2.80100 3.06800 3.38570 3.70506 3.77964 3.93830 4.04248 4.07701 4.10209 4.22314 4.24433 4.28037 4.38890 4.47110 4.48002 4.55395 4.58573 4.62633 4.65901 4.71941 4.75974 4.81814 4.88152 4.90360 4.97061 4.98748 5.01417 5.02379 5.05662 5.07349 5.12594 5.16358 5.17300 5.19837 5.25104 5.29710 5.39873 5.45434 5.45460 5.57273 5.61516 5.72186 5.76470 5.80745 5.84413 6.17604 6.25506 6.34894 6.62038 6.78081 7.36039 8.87388 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.004716 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.169797 B = 5935.555929 C = 7543.484540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.084 3.916 3 H 0.026 0.974 4 C -0.073 4.073 5 C -0.096 4.096 6 C -0.130 4.130 7 C -0.128 4.128 8 C -0.094 4.094 9 C -0.083 4.083 10 C -0.132 4.132 11 C -0.084 4.084 12 C -0.122 4.122 13 C -0.114 4.114 14 C -0.081 4.081 15 N -0.682 5.682 16 C 0.101 3.899 17 C 0.036 3.964 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.513 4.513 21 H 0.025 0.975 22 C 0.018 3.982 23 N -0.948 5.948 24 Si 0.944 3.056 25 H -0.283 1.283 26 H -0.314 1.314 27 H -0.214 1.214 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.341 0.659 45 H 0.052 0.948 46 H -0.002 1.002 47 H 0.055 0.945 48 H 0.041 0.959 49 H 0.029 0.971 50 H 0.039 0.961 51 H 0.023 0.977 52 H 0.070 0.930 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.548 -7.168 22.988 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.026 4.026 3 H 0.044 0.956 4 C -0.110 4.110 5 C -0.096 4.096 6 C -0.148 4.148 7 C -0.146 4.146 8 C -0.094 4.094 9 C -0.083 4.083 10 C -0.150 4.150 11 C -0.121 4.121 12 C -0.159 4.159 13 C -0.151 4.151 14 C -0.118 4.118 15 N -0.316 5.316 16 C -0.028 4.028 17 C 0.035 3.965 18 C -0.189 4.189 19 C -0.185 4.185 20 C -0.551 4.551 21 H 0.044 0.956 22 C -0.179 4.179 23 N -0.588 5.588 24 Si 0.774 3.226 25 H -0.211 1.211 26 H -0.244 1.244 27 H -0.138 1.138 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.163 0.837 45 H 0.071 0.929 46 H 0.016 0.984 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.059 0.941 51 H 0.041 0.959 52 H 0.089 0.911 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.983 -7.379 22.678 24.363 hybrid contribution 0.607 0.598 -0.929 1.261 sum 5.589 -6.781 21.748 23.457 Atomic orbital electron populations 1.21744 0.93556 1.02470 1.01304 1.21557 0.96386 0.95227 0.89390 0.95582 1.20773 0.90174 1.02399 0.97701 1.19994 0.96226 0.95249 0.98108 1.21178 0.95158 0.98179 1.00271 1.21391 0.93821 0.99069 1.00299 1.19885 0.96695 0.94663 0.98201 1.19839 0.93723 0.96569 0.98141 1.21241 0.93413 0.99719 1.00634 1.20522 0.95198 0.96183 1.00156 1.21562 0.95277 1.01188 0.97919 1.21522 1.00011 0.96353 0.97261 1.20508 0.89766 0.98766 1.02711 1.60748 1.33813 1.33004 1.04056 1.21611 0.98303 0.92567 0.90357 1.18456 0.92521 0.93177 0.92368 1.22125 0.97865 0.98969 0.99955 1.22071 0.99019 0.98228 0.99231 1.21182 1.44097 0.95593 0.94246 0.95624 1.25795 0.93919 1.02293 0.95930 1.70114 1.46349 1.36782 1.05535 0.86331 0.76879 0.81738 0.77641 1.21089 1.24415 1.13785 0.91698 0.90740 0.94311 0.88517 0.89734 0.84924 0.84725 0.85880 0.89538 0.91324 0.90127 0.93033 0.91263 0.90118 0.91111 0.89545 0.83714 0.92927 0.98374 0.92587 0.94046 0.95155 0.94150 0.95906 0.91122 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.42 71.98 0.68 -2.49 16 2 C 0.08 2.25 2.64 44.92 0.12 2.37 16 3 H 0.03 0.78 7.80 -2.39 -0.02 0.76 16 4 C -0.07 -1.56 4.98 29.85 0.15 -1.41 16 5 C -0.10 -2.29 4.83 -19.93 -0.10 -2.38 16 6 C -0.13 -2.95 9.71 22.20 0.22 -2.73 16 7 C -0.13 -2.82 9.61 22.36 0.21 -2.61 16 8 C -0.09 -2.15 5.74 -19.86 -0.11 -2.26 16 9 C -0.08 -1.99 5.74 -19.86 -0.11 -2.11 16 10 C -0.13 -3.29 7.62 22.36 0.17 -3.12 16 11 C -0.08 -1.74 5.67 29.74 0.17 -1.57 16 12 C -0.12 -2.27 5.98 30.61 0.18 -2.08 16 13 C -0.11 -1.79 5.98 30.61 0.18 -1.60 16 14 C -0.08 -1.44 5.67 29.73 0.17 -1.27 16 15 N -0.68 -22.18 5.53 -491.57 -2.72 -24.90 16 16 C 0.10 4.16 4.37 86.30 0.38 4.53 16 17 C 0.04 1.65 0.57 -52.93 -0.03 1.62 16 18 C -0.13 -5.62 7.24 71.98 0.52 -5.10 16 19 C -0.13 -5.49 7.54 71.98 0.54 -4.95 16 20 C -0.51 -29.64 8.62 25.60 0.22 -29.42 16 21 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 22 C 0.02 1.04 5.32 84.66 0.45 1.49 16 23 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 24 Si 0.94 45.86 22.79 68.60 1.56 47.42 16 25 H -0.28 -13.53 7.10 99.48 0.71 -12.82 16 26 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 27 H -0.21 -9.17 4.65 99.48 0.46 -8.71 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.06 7.45 -2.39 -0.02 1.04 16 31 H 0.10 1.64 8.09 -2.39 -0.02 1.62 16 32 H 0.08 1.73 8.09 -2.38 -0.02 1.71 16 33 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.13 2.37 8.05 -2.91 -0.02 2.34 16 35 H 0.12 2.96 7.54 -2.91 -0.02 2.94 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.53 8.13 -2.38 -0.02 1.51 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 40 H 0.07 1.02 8.10 -2.38 -0.02 1.00 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.25 8.12 -2.39 -0.02 1.23 16 44 H 0.34 10.85 3.79 -89.69 -0.34 10.51 16 45 H 0.05 2.25 7.44 -2.38 -0.02 2.23 16 46 H 0.00 -0.09 8.05 -2.39 -0.02 -0.11 16 47 H 0.06 2.02 7.06 -2.39 -0.02 2.01 16 48 H 0.04 1.84 4.30 -2.39 -0.01 1.83 16 49 H 0.03 1.30 8.12 -2.38 -0.02 1.28 16 50 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.02 1.00 2.26 -2.38 -0.01 1.00 16 52 H 0.07 2.62 7.60 -2.39 -0.02 2.60 16 53 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -67.20 387.79 3.43 -63.77 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.28 Total: 29.07 kcal Atomic # 6 Polarization: -59.09 SS G_CDS: 4.01 Total: -55.09 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -2.42 Total: -85.17 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.56 Total: 47.42 kcal Total: -67.20 3.43 -63.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206224295.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.878 kcal (2) G-P(sol) polarization free energy of solvation -67.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds