Wall clock time and date at job start Tue Mar 31 2020 10:39:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08998 * 109.47321 * 2 1
4 4 C 1.53004 * 109.47044 * 239.99813 * 2 1 3
5 5 C 1.50702 * 109.46774 * 65.00527 * 4 2 1
6 6 C 1.38234 * 120.00257 * 90.00005 * 5 4 2
7 7 C 1.38238 * 119.99675 * 180.25732 * 6 5 4
8 8 C 1.38228 * 120.00110 * 359.52133 * 7 6 5
9 9 C 1.50706 * 119.99983 * 180.21781 * 8 7 6
10 10 C 1.53000 * 109.46984 * 240.21416 * 9 8 7
11 11 C 1.52996 * 109.46753 * 0.21232 * 9 8 7
12 12 C 1.52992 * 109.47173 * 120.21418 * 9 8 7
13 13 C 1.38234 * 120.00090 * 0.43562 * 8 7 6
14 14 C 1.38235 * 119.99522 * 269.97018 * 5 4 2
15 15 C 1.53001 * 109.47049 * 119.99846 * 2 1 3
16 16 N 1.46897 * 109.47463 * 295.00546 * 15 2 1
17 17 C 1.47482 * 110.99738 * 265.97317 * 16 15 2
18 18 C 1.53510 * 87.93027 * 221.29613 * 17 16 15
19 19 C 1.50703 * 114.34766 * 139.68341 * 18 17 16
20 20 H 1.07997 * 120.00140 * 266.07551 * 19 18 17
21 21 C 1.37878 * 119.99842 * 86.06934 * 19 18 17
22 22 N 1.31513 * 119.99775 * 180.02562 * 21 19 18
23 23 Si 1.86800 * 120.00126 * 0.02562 * 21 19 18
24 24 H 1.48501 * 109.46948 * 89.99890 * 23 21 19
25 25 H 1.48499 * 109.47033 * 209.99719 * 23 21 19
26 26 H 1.48496 * 109.47087 * 329.99856 * 23 21 19
27 27 C 1.47477 * 111.00415 * 169.99860 * 16 15 2
28 28 H 1.09004 * 109.47056 * 60.00189 * 1 2 3
29 29 H 1.09003 * 109.46982 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47483 * 299.99545 * 1 2 3
31 31 H 1.08993 * 109.47638 * 305.00048 * 4 2 1
32 32 H 1.08998 * 109.46675 * 184.99844 * 4 2 1
33 33 H 1.08002 * 119.99744 * 359.97115 * 6 5 4
34 34 H 1.08004 * 119.99577 * 179.72816 * 7 6 5
35 35 H 1.08997 * 109.47397 * 59.99760 * 10 9 8
36 36 H 1.08997 * 109.47114 * 180.02562 * 10 9 8
37 37 H 1.09001 * 109.47217 * 300.00107 * 10 9 8
38 38 H 1.09000 * 109.46971 * 60.00499 * 11 9 8
39 39 H 1.09005 * 109.46939 * 180.02562 * 11 9 8
40 40 H 1.08996 * 109.47552 * 299.99610 * 11 9 8
41 41 H 1.09001 * 109.47420 * 59.99658 * 12 9 8
42 42 H 1.08997 * 109.47568 * 180.02562 * 12 9 8
43 43 H 1.09000 * 109.47385 * 300.00593 * 12 9 8
44 44 H 1.08001 * 120.00324 * 179.78918 * 13 8 7
45 45 H 1.07996 * 120.00471 * 0.02562 * 14 5 4
46 46 H 1.09006 * 109.46888 * 55.00506 * 15 2 1
47 47 H 1.09000 * 109.47202 * 174.99993 * 15 2 1
48 48 H 1.09008 * 113.47219 * 336.05572 * 17 16 15
49 49 H 1.08996 * 113.48125 * 106.52596 * 17 16 15
50 50 H 1.09003 * 114.16946 * 272.37185 * 18 17 16
51 51 H 0.96999 * 120.00371 * 179.97438 * 22 21 19
52 52 H 1.08997 * 113.47750 * 253.46892 * 27 16 15
53 53 H 1.09008 * 113.47402 * 23.87281 * 27 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2493
5 6 1.6414 0.0571 -2.4766
6 6 2.4815 1.0330 -2.9792
7 6 2.1133 1.7506 -4.1019
8 6 0.9096 1.4855 -4.7277
9 6 0.5105 2.2645 -5.9545
10 6 -0.7995 3.0070 -5.6833
11 6 1.6078 3.2743 -6.2966
12 6 0.3181 1.3030 -7.1289
13 6 0.0699 0.5090 -4.2255
14 6 0.4358 -0.2053 -3.1000
15 6 2.0400 -0.7212 1.2493
16 7 1.6513 0.0373 2.4457
17 6 2.7282 0.9545 2.8629
18 6 2.4289 0.5563 4.3149
19 6 3.6534 0.3737 5.1742
20 1 4.0890 -0.6074 5.2920
21 6 4.2176 1.4594 5.8099
22 7 5.2865 1.3001 6.5593
23 14 3.4637 3.1564 5.6066
24 1 2.4483 3.3772 6.6675
25 1 4.5272 4.1869 5.7172
26 1 2.8164 3.2540 4.2738
27 6 1.9133 -0.7388 3.6720
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5137 0.8899
31 1 1.6054 -1.7198 -1.2952
32 1 3.1263 -0.7995 -1.2056
33 1 3.4233 1.2379 -2.4921
34 1 2.7677 2.5161 -4.4921
35 1 -0.6624 3.6920 -4.8467
36 1 -1.0884 3.5701 -6.5708
37 1 -1.5812 2.2876 -5.4395
38 1 2.5410 2.7453 -6.4898
39 1 1.3189 3.8381 -7.1837
40 1 1.7448 3.9594 -5.4600
41 1 -0.4636 0.5835 -6.8851
42 1 0.0298 1.8664 -8.0163
43 1 1.2513 0.7739 -7.3220
44 1 -0.8721 0.3042 -4.7124
45 1 -0.2205 -0.9678 -2.7074
46 1 1.6054 -1.7198 1.2951
47 1 3.1263 -0.7995 1.2056
48 1 3.7171 0.6461 2.5232
49 1 2.5151 2.0014 2.6470
50 1 1.6542 1.1569 4.7918
51 1 5.6837 2.0639 7.0063
52 1 1.0096 -1.1270 4.1416
53 1 2.6839 -1.4998 3.5479
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001207914850.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:39:54
Heat of formation + Delta-G solvation = 27.464135 kcal
Electronic energy + Delta-G solvation = -26097.528892 eV
Core-core repulsion = 22740.777774 eV
Total energy + Delta-G solvation = -3356.751118 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 315.226 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.19464 -39.21846 -37.31567 -35.09190 -32.53549 -31.23431 -30.82627 -28.77294
-27.67158 -27.56565 -26.66308 -25.58355 -24.97998 -22.91304 -22.40543 -21.47548
-19.68921 -19.37277 -18.60698 -17.07457 -16.66389 -15.63402 -15.32662 -15.05673
-14.80400 -14.61019 -14.48625 -14.19948 -13.92594 -13.76702 -13.58298 -13.41200
-13.16082 -12.86382 -12.61387 -12.40315 -12.29298 -12.12247 -12.00161 -11.83992
-11.75533 -11.59507 -11.47129 -11.26875 -11.16368 -10.97720 -10.83686 -10.70119
-10.61721 -10.56580 -10.13934 -9.94702 -9.76927 -9.43658 -9.11006 -8.95848
-8.54921 -8.51714 -8.08627 -6.09977 -4.10122 1.27232 1.34418 3.30328
3.38631 3.44065 3.65515 4.31363 4.42870 4.44744 4.64182 4.69072
4.82158 4.91766 4.93478 4.99881 5.08298 5.17327 5.23366 5.28963
5.32055 5.37610 5.39617 5.43265 5.48966 5.54784 5.56123 5.62302
5.68595 5.73844 5.80419 5.84725 5.88263 5.90928 5.93173 5.98218
6.01178 6.01991 6.11442 6.20966 6.27139 6.36123 6.38489 6.42378
6.52387 6.52835 6.54358 6.63700 6.66644 6.78289 6.95292 7.06488
7.37759 7.70402 7.91677 8.49723 8.93097 9.53254 11.02560
Molecular weight = 315.23amu
Principal moments of inertia in cm(-1)
A = 0.020503 B = 0.002388 C = 0.002267
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1365.349726 B =11722.179859 C =12347.942661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.074 4.074
3 H 0.069 0.931
4 C -0.079 4.079
5 C -0.073 4.073
6 C -0.116 4.116
7 C -0.120 4.120
8 C -0.080 4.080
9 C -0.029 4.029
10 C -0.138 4.138
11 C -0.144 4.144
12 C -0.137 4.137
13 C -0.116 4.116
14 C -0.113 4.113
15 C 0.025 3.975
16 N -0.482 5.482
17 C -0.010 4.010
18 C -0.001 4.001
19 C -0.510 4.510
20 H 0.073 0.927
21 C 0.073 3.927
22 N -0.900 5.900
23 Si 0.876 3.124
24 H -0.277 1.277
25 H -0.289 1.289
26 H -0.257 1.257
27 C 0.009 3.991
28 H 0.047 0.953
29 H 0.045 0.955
30 H 0.066 0.934
31 H 0.070 0.930
32 H 0.070 0.930
33 H 0.120 0.880
34 H 0.123 0.877
35 H 0.057 0.943
36 H 0.056 0.944
37 H 0.056 0.944
38 H 0.058 0.942
39 H 0.056 0.944
40 H 0.059 0.941
41 H 0.056 0.944
42 H 0.056 0.944
43 H 0.055 0.945
44 H 0.117 0.883
45 H 0.120 0.880
46 H 0.062 0.938
47 H 0.041 0.959
48 H 0.063 0.937
49 H 0.061 0.939
50 H 0.055 0.945
51 H 0.264 0.736
52 H 0.064 0.936
53 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.293 -0.010 -27.162 29.047
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.093 4.093
3 H 0.087 0.913
4 C -0.117 4.117
5 C -0.073 4.073
6 C -0.134 4.134
7 C -0.138 4.138
8 C -0.080 4.080
9 C -0.029 4.029
10 C -0.196 4.196
11 C -0.201 4.201
12 C -0.195 4.195
13 C -0.134 4.134
14 C -0.131 4.131
15 C -0.104 4.104
16 N -0.203 5.203
17 C -0.139 4.139
18 C -0.020 4.020
19 C -0.548 4.548
20 H 0.091 0.909
21 C -0.130 4.130
22 N -0.537 5.537
23 Si 0.703 3.297
24 H -0.203 1.203
25 H -0.216 1.216
26 H -0.181 1.181
27 C -0.120 4.120
28 H 0.066 0.934
29 H 0.064 0.936
30 H 0.085 0.915
31 H 0.089 0.911
32 H 0.088 0.912
33 H 0.138 0.862
34 H 0.141 0.859
35 H 0.076 0.924
36 H 0.075 0.925
37 H 0.075 0.925
38 H 0.077 0.923
39 H 0.075 0.925
40 H 0.078 0.922
41 H 0.075 0.925
42 H 0.075 0.925
43 H 0.075 0.925
44 H 0.135 0.865
45 H 0.138 0.862
46 H 0.081 0.919
47 H 0.059 0.941
48 H 0.081 0.919
49 H 0.079 0.921
50 H 0.073 0.927
51 H 0.074 0.926
52 H 0.083 0.917
53 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -10.834 0.315 -27.229 29.307
hybrid contribution 0.635 0.536 0.054 0.833
sum -10.199 0.851 -27.175 29.039
Atomic orbital electron populations
1.21758 0.94864 1.01055 1.01770 1.20961 0.96559 0.99602 0.92134
0.91258 1.20711 1.01129 0.98208 0.91667 1.19886 0.94432 0.96721
0.96247 1.21081 0.99781 0.96090 0.96410 1.21136 0.96546 0.99995
0.96083 1.19732 0.94783 0.96934 0.96541 1.19481 0.95969 0.94710
0.92757 1.21888 0.95925 1.00131 1.01608 1.21962 0.98156 0.98546
1.01463 1.21880 1.01908 0.98801 0.96871 1.20905 0.99356 0.96473
0.96650 1.21021 0.96278 1.00117 0.95644 1.22683 0.98290 0.97255
0.92184 1.68778 1.39258 1.11722 1.00591 1.24398 0.92756 0.96959
0.99755 1.20505 0.96864 0.92878 0.91759 1.20927 1.09626 0.96351
1.27889 0.90883 1.25021 0.94595 0.99182 0.94166 1.69912 1.21347
1.31235 1.31219 0.86862 0.79098 0.84007 0.79689 1.20316 1.21555
1.18125 1.23762 0.98976 0.97879 0.91360 0.93370 0.93603 0.91486
0.91149 0.91159 0.86203 0.85916 0.92422 0.92482 0.92464 0.92284
0.92490 0.92204 0.92481 0.92484 0.92548 0.86543 0.86243 0.91902
0.94081 0.91903 0.92079 0.92705 0.92632 0.91723 0.92257
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.80 8.65 37.16 0.32 -1.48 16
2 C -0.07 -1.01 2.59 -90.62 -0.23 -1.24 16
3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
4 C -0.08 -0.91 4.84 -27.88 -0.13 -1.05 16
5 C -0.07 -0.83 4.71 -104.62 -0.49 -1.32 16
6 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16
7 C -0.12 -1.23 8.98 -39.59 -0.36 -1.58 16
8 C -0.08 -0.77 4.76 -104.62 -0.50 -1.27 16
9 C -0.03 -0.22 0.85 -155.66 -0.13 -0.36 16
10 C -0.14 -1.00 8.29 37.16 0.31 -0.69 16
11 C -0.14 -1.00 7.13 37.16 0.26 -0.73 16
12 C -0.14 -0.93 8.29 37.15 0.31 -0.62 16
13 C -0.12 -1.13 8.71 -39.58 -0.34 -1.48 16
14 C -0.11 -1.18 7.97 -39.58 -0.32 -1.50 16
15 C 0.03 0.39 4.21 -3.83 -0.02 0.38 16
16 N -0.48 -9.08 5.79 -244.62 -1.42 -10.50 16
17 C -0.01 -0.20 6.70 -7.54 -0.05 -0.26 16
18 C 0.00 -0.02 2.95 -91.24 -0.27 -0.28 16
19 C -0.51 -14.14 9.38 -34.44 -0.32 -14.46 16
20 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16
21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16
22 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16
23 Si 0.88 21.37 27.14 -169.99 -4.61 16.76 16
24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
26 H -0.26 -5.98 5.68 56.52 0.32 -5.66 16
27 C 0.01 0.18 7.25 -7.54 -0.05 0.13 16
28 H 0.05 0.59 6.27 -51.93 -0.33 0.27 16
29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
30 H 0.07 1.00 7.75 -51.93 -0.40 0.60 16
31 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16
32 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16
33 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16
34 H 0.12 1.08 5.90 -52.48 -0.31 0.77 16
35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16
36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16
37 H 0.06 0.40 7.39 -51.93 -0.38 0.02 16
38 H 0.06 0.40 7.52 -51.93 -0.39 0.01 16
39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
40 H 0.06 0.43 7.50 -51.93 -0.39 0.04 16
41 H 0.06 0.38 7.39 -51.93 -0.38 -0.01 16
42 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16
43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
44 H 0.12 0.95 7.10 -52.49 -0.37 0.58 16
45 H 0.12 1.13 8.04 -52.49 -0.42 0.70 16
46 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16
47 H 0.04 0.67 7.30 -51.93 -0.38 0.29 16
48 H 0.06 1.37 7.38 -51.92 -0.38 0.98 16
49 H 0.06 1.31 7.11 -51.93 -0.37 0.94 16
50 H 0.05 1.31 7.04 -51.93 -0.37 0.95 16
51 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16
52 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16
53 H 0.06 1.20 7.87 -51.92 -0.41 0.80 16
LS Contribution 403.56 15.07 6.08 6.08
Total: -1.00 -29.35 403.56 -11.66 -41.01
By element:
Atomic # 1 Polarization: 10.63 SS G_CDS: -9.99 Total: 0.64 kcal
Atomic # 6 Polarization: -25.01 SS G_CDS: -2.50 Total: -27.51 kcal
Atomic # 7 Polarization: -36.34 SS G_CDS: -0.64 Total: -36.98 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -4.61 Total: 16.76 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -29.35 -11.66 -41.01 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207914850.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.476 kcal
(2) G-P(sol) polarization free energy of solvation -29.348 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.128 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.664 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.464 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds