Wall clock time and date at job start Tue Mar 31 2020 10:39:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08998 * 109.47321 * 2 1
4 4 C 1.53004 * 109.47044 * 239.99813 * 2 1 3
5 5 C 1.50702 * 109.46774 * 65.00527 * 4 2 1
6 6 C 1.38234 * 120.00257 * 90.00005 * 5 4 2
7 7 C 1.38238 * 119.99675 * 180.25732 * 6 5 4
8 8 C 1.38228 * 120.00110 * 359.52133 * 7 6 5
9 9 C 1.50706 * 119.99983 * 180.21781 * 8 7 6
10 10 C 1.53000 * 109.46984 * 240.21416 * 9 8 7
11 11 C 1.52996 * 109.46753 * 0.21232 * 9 8 7
12 12 C 1.52992 * 109.47173 * 120.21418 * 9 8 7
13 13 C 1.38234 * 120.00090 * 0.43562 * 8 7 6
14 14 C 1.38235 * 119.99522 * 269.97018 * 5 4 2
15 15 C 1.53001 * 109.47049 * 119.99846 * 2 1 3
16 16 N 1.46897 * 109.47463 * 295.00546 * 15 2 1
17 17 C 1.47482 * 110.99738 * 265.97317 * 16 15 2
18 18 C 1.53510 * 87.93027 * 221.29613 * 17 16 15
19 19 C 1.50703 * 114.34766 * 139.68341 * 18 17 16
20 20 H 1.07997 * 120.00140 * 266.07551 * 19 18 17
21 21 C 1.37878 * 119.99842 * 86.06934 * 19 18 17
22 22 N 1.31513 * 119.99775 * 180.02562 * 21 19 18
23 23 Si 1.86800 * 120.00126 * 0.02562 * 21 19 18
24 24 H 1.48501 * 109.46948 * 89.99890 * 23 21 19
25 25 H 1.48499 * 109.47033 * 209.99719 * 23 21 19
26 26 H 1.48496 * 109.47087 * 329.99856 * 23 21 19
27 27 C 1.47477 * 111.00415 * 169.99860 * 16 15 2
28 28 H 1.09004 * 109.47056 * 60.00189 * 1 2 3
29 29 H 1.09003 * 109.46982 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47483 * 299.99545 * 1 2 3
31 31 H 1.08993 * 109.47638 * 305.00048 * 4 2 1
32 32 H 1.08998 * 109.46675 * 184.99844 * 4 2 1
33 33 H 1.08002 * 119.99744 * 359.97115 * 6 5 4
34 34 H 1.08004 * 119.99577 * 179.72816 * 7 6 5
35 35 H 1.08997 * 109.47397 * 59.99760 * 10 9 8
36 36 H 1.08997 * 109.47114 * 180.02562 * 10 9 8
37 37 H 1.09001 * 109.47217 * 300.00107 * 10 9 8
38 38 H 1.09000 * 109.46971 * 60.00499 * 11 9 8
39 39 H 1.09005 * 109.46939 * 180.02562 * 11 9 8
40 40 H 1.08996 * 109.47552 * 299.99610 * 11 9 8
41 41 H 1.09001 * 109.47420 * 59.99658 * 12 9 8
42 42 H 1.08997 * 109.47568 * 180.02562 * 12 9 8
43 43 H 1.09000 * 109.47385 * 300.00593 * 12 9 8
44 44 H 1.08001 * 120.00324 * 179.78918 * 13 8 7
45 45 H 1.07996 * 120.00471 * 0.02562 * 14 5 4
46 46 H 1.09006 * 109.46888 * 55.00506 * 15 2 1
47 47 H 1.09000 * 109.47202 * 174.99993 * 15 2 1
48 48 H 1.09008 * 113.47219 * 336.05572 * 17 16 15
49 49 H 1.08996 * 113.48125 * 106.52596 * 17 16 15
50 50 H 1.09003 * 114.16946 * 272.37185 * 18 17 16
51 51 H 0.96999 * 120.00371 * 179.97438 * 22 21 19
52 52 H 1.08997 * 113.47750 * 253.46892 * 27 16 15
53 53 H 1.09008 * 113.47402 * 23.87281 * 27 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2493
5 6 1.6414 0.0571 -2.4766
6 6 2.4815 1.0330 -2.9792
7 6 2.1133 1.7506 -4.1019
8 6 0.9096 1.4855 -4.7277
9 6 0.5105 2.2645 -5.9545
10 6 -0.7995 3.0070 -5.6833
11 6 1.6078 3.2743 -6.2966
12 6 0.3181 1.3030 -7.1289
13 6 0.0699 0.5090 -4.2255
14 6 0.4358 -0.2053 -3.1000
15 6 2.0400 -0.7212 1.2493
16 7 1.6513 0.0373 2.4457
17 6 2.7282 0.9545 2.8629
18 6 2.4289 0.5563 4.3149
19 6 3.6534 0.3737 5.1742
20 1 4.0890 -0.6074 5.2920
21 6 4.2176 1.4594 5.8099
22 7 5.2865 1.3001 6.5593
23 14 3.4637 3.1564 5.6066
24 1 2.4483 3.3772 6.6675
25 1 4.5272 4.1869 5.7172
26 1 2.8164 3.2540 4.2738
27 6 1.9133 -0.7388 3.6720
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5137 0.8899
31 1 1.6054 -1.7198 -1.2952
32 1 3.1263 -0.7995 -1.2056
33 1 3.4233 1.2379 -2.4921
34 1 2.7677 2.5161 -4.4921
35 1 -0.6624 3.6920 -4.8467
36 1 -1.0884 3.5701 -6.5708
37 1 -1.5812 2.2876 -5.4395
38 1 2.5410 2.7453 -6.4898
39 1 1.3189 3.8381 -7.1837
40 1 1.7448 3.9594 -5.4600
41 1 -0.4636 0.5835 -6.8851
42 1 0.0298 1.8664 -8.0163
43 1 1.2513 0.7739 -7.3220
44 1 -0.8721 0.3042 -4.7124
45 1 -0.2205 -0.9678 -2.7074
46 1 1.6054 -1.7198 1.2951
47 1 3.1263 -0.7995 1.2056
48 1 3.7171 0.6461 2.5232
49 1 2.5151 2.0014 2.6470
50 1 1.6542 1.1569 4.7918
51 1 5.6837 2.0639 7.0063
52 1 1.0096 -1.1270 4.1416
53 1 2.6839 -1.4998 3.5479
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001207914850.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:39:53
Heat of formation + Delta-G solvation = 13.318122 kcal
Electronic energy + Delta-G solvation = -26098.142310 eV
Core-core repulsion = 22740.777774 eV
Total energy + Delta-G solvation = -3357.364535 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 315.226 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.06587 -40.68594 -38.13483 -36.10720 -34.61351 -31.98694 -31.94868 -30.24277
-28.24423 -28.08823 -27.69236 -27.11247 -26.67917 -24.24892 -23.18551 -22.55083
-20.82645 -20.41121 -20.02992 -19.10596 -17.47303 -16.82460 -16.56315 -16.37630
-15.94544 -15.72911 -15.39069 -15.23091 -15.08532 -14.81365 -14.60779 -14.47614
-14.43246 -14.19077 -13.58512 -13.46749 -13.28955 -13.20750 -12.99449 -12.87352
-12.80159 -12.56926 -12.54336 -12.35904 -12.18084 -12.06083 -11.98808 -11.84352
-11.74213 -11.56033 -11.50415 -11.36426 -11.31538 -11.16017 -11.02723 -10.64863
-9.74394 -9.70405 -9.31419 -8.30064 -6.34827 0.48756 0.56193 1.37191
1.39270 1.52129 2.36978 2.86024 3.03405 3.27149 3.68071 3.79753
3.83693 3.96319 4.09877 4.13091 4.16605 4.19772 4.24008 4.30038
4.39725 4.41695 4.48892 4.58776 4.61918 4.66149 4.71458 4.76103
4.79162 4.82371 4.86662 4.90191 4.90531 4.93953 5.00562 5.02248
5.03834 5.05485 5.07837 5.14424 5.21163 5.24298 5.31788 5.36693
5.38657 5.44859 5.46144 5.52740 5.57705 5.63717 5.64741 5.79559
5.82527 6.18558 6.28671 6.32168 6.70732 7.31961 8.85943
Molecular weight = 315.23amu
Principal moments of inertia in cm(-1)
A = 0.020503 B = 0.002388 C = 0.002267
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1365.349726 B =11722.179859 C =12347.942661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.066 4.066
3 H 0.050 0.950
4 C -0.071 4.071
5 C -0.086 4.086
6 C -0.131 4.131
7 C -0.130 4.130
8 C -0.082 4.082
9 C -0.030 4.030
10 C -0.137 4.137
11 C -0.144 4.144
12 C -0.135 4.135
13 C -0.121 4.121
14 C -0.118 4.118
15 C 0.024 3.976
16 N -0.472 5.472
17 C 0.000 4.000
18 C -0.015 4.015
19 C -0.513 4.513
20 H 0.033 0.967
21 C 0.014 3.986
22 N -0.948 5.948
23 Si 0.942 3.058
24 H -0.270 1.270
25 H -0.288 1.288
26 H -0.239 1.239
27 C 0.017 3.983
28 H 0.055 0.945
29 H 0.058 0.942
30 H 0.048 0.952
31 H 0.083 0.917
32 H 0.068 0.932
33 H 0.118 0.882
34 H 0.132 0.868
35 H 0.046 0.954
36 H 0.069 0.931
37 H 0.058 0.942
38 H 0.057 0.943
39 H 0.068 0.932
40 H 0.054 0.946
41 H 0.059 0.941
42 H 0.069 0.931
43 H 0.050 0.950
44 H 0.133 0.867
45 H 0.131 0.869
46 H 0.079 0.921
47 H 0.034 0.966
48 H 0.053 0.947
49 H 0.063 0.937
50 H 0.057 0.943
51 H 0.266 0.734
52 H 0.081 0.919
53 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.432 0.533 -29.588 32.098
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.085 4.085
3 H 0.069 0.931
4 C -0.109 4.109
5 C -0.086 4.086
6 C -0.149 4.149
7 C -0.148 4.148
8 C -0.082 4.082
9 C -0.030 4.030
10 C -0.194 4.194
11 C -0.201 4.201
12 C -0.192 4.192
13 C -0.138 4.138
14 C -0.136 4.136
15 C -0.104 4.104
16 N -0.193 5.193
17 C -0.129 4.129
18 C -0.035 4.035
19 C -0.551 4.551
20 H 0.052 0.948
21 C -0.183 4.183
22 N -0.588 5.588
23 Si 0.766 3.234
24 H -0.195 1.195
25 H -0.214 1.214
26 H -0.162 1.162
27 C -0.112 4.112
28 H 0.074 0.926
29 H 0.077 0.923
30 H 0.067 0.933
31 H 0.101 0.899
32 H 0.086 0.914
33 H 0.136 0.864
34 H 0.150 0.850
35 H 0.065 0.935
36 H 0.088 0.912
37 H 0.077 0.923
38 H 0.076 0.924
39 H 0.087 0.913
40 H 0.073 0.927
41 H 0.078 0.922
42 H 0.088 0.912
43 H 0.069 0.931
44 H 0.151 0.849
45 H 0.149 0.851
46 H 0.097 0.903
47 H 0.053 0.947
48 H 0.071 0.929
49 H 0.081 0.919
50 H 0.075 0.925
51 H 0.075 0.925
52 H 0.100 0.900
53 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -12.989 0.843 -29.674 32.403
hybrid contribution 1.320 0.279 0.772 1.554
sum -11.669 1.122 -28.901 31.188
Atomic orbital electron populations
1.21685 0.94120 1.01735 1.01199 1.20863 0.97037 0.98496 0.92079
0.93111 1.20608 1.01033 0.98548 0.90718 1.19899 0.95075 0.97150
0.96516 1.21222 1.00040 0.96623 0.97052 1.21331 0.97199 1.00243
0.95992 1.20020 0.94362 0.96794 0.96979 1.19539 0.96356 0.94869
0.92236 1.21879 0.95670 1.00041 1.01825 1.21959 0.97977 0.98398
1.01768 1.21863 1.01738 0.98730 0.96910 1.21151 1.00015 0.96200
0.96481 1.21203 0.96081 1.00437 0.95845 1.22764 0.98164 0.97912
0.91609 1.68760 1.38036 1.11288 1.01265 1.24158 0.93137 0.97651
0.97973 1.20511 0.95261 0.95521 0.92179 1.21143 1.10876 0.94680
1.28383 0.94827 1.25904 0.94975 1.03547 0.93895 1.70054 1.23237
1.32590 1.32895 0.85807 0.78340 0.78620 0.80618 1.19523 1.21428
1.16176 1.23645 0.99397 0.96453 0.91697 0.92614 0.92274 0.93328
0.89879 0.91364 0.86369 0.84983 0.93459 0.91182 0.92260 0.92388
0.91311 0.92743 0.92244 0.91235 0.93103 0.84878 0.85077 0.90307
0.94727 0.92862 0.91853 0.92505 0.92496 0.90017 0.92746
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.12 8.65 71.98 0.62 -2.50 16
2 C -0.07 -1.69 2.59 -10.79 -0.03 -1.72 16
3 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16
4 C -0.07 -1.52 4.84 29.85 0.14 -1.38 16
5 C -0.09 -1.84 4.71 -19.87 -0.09 -1.93 16
6 C -0.13 -2.86 9.70 22.27 0.22 -2.64 16
7 C -0.13 -2.54 8.98 22.27 0.20 -2.34 16
8 C -0.08 -1.44 4.76 -19.87 -0.09 -1.53 16
9 C -0.03 -0.40 0.85 -52.93 -0.05 -0.45 16
10 C -0.14 -1.69 8.29 71.98 0.60 -1.09 16
11 C -0.14 -1.75 7.13 71.98 0.51 -1.24 16
12 C -0.14 -1.52 8.29 71.98 0.60 -0.93 16
13 C -0.12 -2.11 8.71 22.27 0.19 -1.91 16
14 C -0.12 -2.24 7.97 22.27 0.18 -2.06 16
15 C 0.02 0.72 4.21 86.30 0.36 1.09 16
16 N -0.47 -17.06 5.79 -927.85 -5.37 -22.43 16
17 C 0.00 0.01 6.70 83.58 0.56 0.57 16
18 C -0.02 -0.72 2.95 -11.20 -0.03 -0.75 16
19 C -0.51 -29.06 9.38 25.60 0.24 -28.82 16
20 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16
21 C 0.01 0.83 5.47 84.66 0.46 1.29 16
22 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16
23 Si 0.94 44.11 27.14 68.60 1.86 45.97 16
24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16
25 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16
26 H -0.24 -10.35 5.68 99.48 0.56 -9.78 16
27 C 0.02 0.67 7.25 83.58 0.61 1.27 16
28 H 0.05 1.25 6.27 -2.38 -0.01 1.24 16
29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
30 H 0.05 1.35 7.75 -2.39 -0.02 1.33 16
31 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16
32 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16
33 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16
34 H 0.13 2.22 5.90 -2.91 -0.02 2.20 16
35 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16
37 H 0.06 0.70 7.39 -2.39 -0.02 0.68 16
38 H 0.06 0.71 7.52 -2.39 -0.02 0.69 16
39 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16
40 H 0.05 0.71 7.50 -2.39 -0.02 0.70 16
41 H 0.06 0.64 7.39 -2.39 -0.02 0.62 16
42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
43 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16
44 H 0.13 1.82 7.10 -2.91 -0.02 1.80 16
45 H 0.13 2.12 8.04 -2.91 -0.02 2.10 16
46 H 0.08 2.14 8.08 -2.38 -0.02 2.12 16
47 H 0.03 1.09 7.30 -2.39 -0.02 1.07 16
48 H 0.05 2.31 7.38 -2.38 -0.02 2.30 16
49 H 0.06 2.61 7.11 -2.39 -0.02 2.60 16
50 H 0.06 2.64 7.04 -2.39 -0.02 2.62 16
51 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16
52 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16
53 H 0.05 2.19 7.87 -2.38 -0.02 2.17 16
Total: -1.00 -63.58 403.56 2.69 -60.89
By element:
Atomic # 1 Polarization: 20.65 SS G_CDS: 0.69 Total: 21.34 kcal
Atomic # 6 Polarization: -52.27 SS G_CDS: 5.20 Total: -47.07 kcal
Atomic # 7 Polarization: -76.07 SS G_CDS: -5.07 Total: -81.14 kcal
Atomic # 14 Polarization: 44.11 SS G_CDS: 1.86 Total: 45.97 kcal
Total: -63.58 2.69 -60.89 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207914850.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.212 kcal
(2) G-P(sol) polarization free energy of solvation -63.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.633 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.894 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.318 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds