Wall clock time and date at job start Tue Mar 31 2020 10:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47487 * 2 1 4 4 C 1.52996 * 109.47083 * 239.99557 * 2 1 3 5 5 C 1.52998 * 109.47358 * 300.00318 * 4 2 1 6 6 H 1.08999 * 109.47452 * 59.99854 * 5 4 2 7 7 N 1.46901 * 109.47143 * 180.02562 * 5 4 2 8 8 C 1.46900 * 110.99785 * 274.99837 * 7 5 4 9 9 C 1.53007 * 109.47210 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.46696 * 60.00064 * 9 8 7 11 11 C 1.53003 * 109.46953 * 300.00495 * 9 8 7 12 12 C 1.50699 * 109.47332 * 179.97438 * 9 8 7 13 13 H 1.08007 * 119.99885 * 357.50884 * 12 9 8 14 14 C 1.37873 * 120.00080 * 177.50140 * 12 9 8 15 15 N 1.31513 * 119.99825 * 6.28718 * 14 12 9 16 16 Si 1.86797 * 120.00223 * 186.28766 * 14 12 9 17 17 H 1.48502 * 109.47038 * 85.34871 * 16 14 12 18 18 H 1.48505 * 109.46916 * 325.35418 * 16 14 12 19 19 H 1.48499 * 109.47109 * 205.35010 * 16 14 12 20 20 C 1.53001 * 109.47127 * 299.99788 * 5 4 2 21 21 C 1.53003 * 109.46969 * 60.00367 * 20 5 4 22 22 H 1.08996 * 109.47505 * 59.99674 * 21 20 5 23 23 C 1.50696 * 109.47098 * 179.97438 * 21 20 5 24 24 C 1.38239 * 120.00012 * 59.72296 * 23 21 20 25 25 C 1.38235 * 119.99627 * 179.76687 * 24 23 21 26 26 C 1.38231 * 120.00547 * 0.48371 * 25 24 23 27 27 C 1.38239 * 119.99586 * 359.79041 * 26 25 24 28 28 C 1.38231 * 120.00188 * 359.95700 * 27 26 25 29 29 C 1.53003 * 109.46762 * 119.99747 * 2 1 3 30 30 H 1.09003 * 109.47230 * 300.00641 * 1 2 3 31 31 H 1.08998 * 109.47021 * 59.99874 * 1 2 3 32 32 H 1.09004 * 109.47501 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47184 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47202 * 60.00599 * 4 2 1 35 35 H 1.00888 * 111.00315 * 38.95398 * 7 5 4 36 36 H 1.08999 * 109.47137 * 60.00406 * 8 7 5 37 37 H 1.09004 * 109.47213 * 300.00123 * 8 7 5 38 38 H 1.09003 * 109.46621 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.47387 * 299.99850 * 10 9 8 40 40 H 1.08991 * 109.47136 * 60.00455 * 10 9 8 41 41 H 1.09004 * 109.46489 * 304.22160 * 11 9 8 42 42 H 1.08992 * 109.47480 * 64.22110 * 11 9 8 43 43 H 1.08993 * 109.46657 * 184.22646 * 11 9 8 44 44 H 0.97006 * 120.00241 * 179.97438 * 15 14 12 45 45 H 1.09004 * 109.46972 * 179.97438 * 20 5 4 46 46 H 1.08996 * 109.47273 * 299.99899 * 20 5 4 47 47 H 1.07992 * 120.00192 * 359.97438 * 24 23 21 48 48 H 1.08004 * 119.99674 * 180.25290 * 25 24 23 49 49 H 1.08000 * 120.00490 * 179.76999 * 26 25 24 50 50 H 1.08001 * 119.99764 * 179.97438 * 27 26 25 51 51 H 1.08000 * 120.00669 * 179.97438 * 28 27 26 52 52 H 1.08994 * 109.47696 * 299.99819 * 29 2 1 53 53 H 1.09002 * 109.46742 * 179.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2491 6 1 0.4399 -2.1638 -1.2491 7 7 2.0201 -2.8565 -2.4482 8 6 1.1369 -2.6109 -3.5961 9 6 1.6784 -3.3473 -4.8231 10 6 1.7330 -4.8487 -4.5337 11 6 3.0852 -2.8383 -5.1437 12 6 0.7720 -3.0958 -6.0005 13 1 -0.1243 -2.5062 -5.8758 14 6 1.0870 -3.6183 -7.2369 15 7 2.1086 -4.4367 -7.3641 16 14 0.0628 -3.1637 -8.7315 17 1 0.5656 -1.8908 -9.3076 18 1 -1.3564 -2.9974 -8.3269 19 1 0.1648 -4.2416 -9.7479 20 6 2.0399 -2.8850 0.0001 21 6 1.5298 -2.1638 1.2493 22 1 0.4399 -2.1637 1.2493 23 6 2.0316 -2.8745 2.4798 24 6 3.3906 -3.0063 2.6960 25 6 3.8508 -3.6541 3.8272 26 6 2.9522 -4.1788 4.7371 27 6 1.5932 -4.0519 4.5180 28 6 1.1329 -3.3996 3.3895 29 6 2.0399 -0.7212 1.2493 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1299 -0.7217 -1.2489 34 1 1.6767 -0.2075 -2.1392 35 1 2.9695 -2.5876 -2.6585 36 1 1.0976 -1.5412 -3.8020 37 1 0.1348 -2.9740 -3.3678 38 1 2.1192 -5.3733 -5.4077 39 1 2.3883 -5.0311 -3.6820 40 1 0.7309 -5.2114 -4.3053 41 1 3.0586 -1.7566 -5.2761 42 1 3.7576 -3.0875 -4.3230 43 1 3.4412 -3.3079 -6.0606 44 1 2.3300 -4.8046 -8.2339 45 1 1.6761 -3.9126 0.0003 46 1 3.1299 -2.8851 0.0001 47 1 4.0927 -2.6003 1.9829 48 1 4.9126 -3.7535 3.9981 49 1 3.3117 -4.6881 5.6189 50 1 0.8910 -4.4622 5.2287 51 1 0.0712 -3.3008 3.2181 52 1 1.6766 -0.2074 2.1393 53 1 3.1299 -0.7216 1.2491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308432165.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:57 Heat of formation + Delta-G solvation = -17.758709 kcal Electronic energy + Delta-G solvation = -27090.315863 eV Core-core repulsion = 23731.603735 eV Total energy + Delta-G solvation = -3358.712128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.11289 -39.49842 -38.13569 -35.34259 -33.95636 -33.02183 -31.72316 -30.32181 -29.11809 -27.69091 -27.48575 -27.24426 -25.46805 -24.26167 -23.35989 -22.47566 -21.49602 -20.39831 -19.45372 -18.04106 -17.68662 -16.94370 -16.48688 -16.20742 -15.95235 -15.50422 -15.33226 -14.98580 -14.88161 -14.67479 -14.61178 -14.18129 -14.08430 -13.98642 -13.77144 -13.62309 -13.25361 -13.05589 -13.00282 -12.66664 -12.57240 -12.50636 -12.44335 -12.15970 -12.08547 -12.07899 -12.06550 -11.86479 -11.72202 -11.43068 -11.28755 -11.19413 -10.88503 -10.76331 -10.60407 -10.32298 -9.74341 -9.49636 -9.03278 -7.96774 -6.13103 0.53406 0.57607 1.41792 1.43567 1.51502 2.46337 2.94383 3.24661 3.40640 3.67427 3.75529 4.05199 4.07417 4.19679 4.24803 4.29585 4.35501 4.37621 4.48162 4.53308 4.56773 4.63273 4.66422 4.67338 4.72211 4.75913 4.82367 4.88815 5.01118 5.02256 5.03318 5.10865 5.15109 5.20162 5.20642 5.25176 5.29897 5.33185 5.34499 5.39389 5.44888 5.47286 5.55105 5.59531 5.67121 5.69980 5.70593 5.77196 5.85167 6.20215 6.21249 6.30864 6.38367 6.52240 6.71283 6.96825 7.54108 9.01223 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.020657 B = 0.002779 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.128539 B =10073.860862 C =10697.396818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 H 0.077 0.923 4 C -0.138 4.138 5 C 0.089 3.911 6 H 0.066 0.934 7 N -0.685 5.685 8 C 0.095 3.905 9 C 0.061 3.939 10 C -0.105 4.105 11 C -0.121 4.121 12 C -0.527 4.527 13 H 0.043 0.957 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.943 3.057 17 H -0.278 1.278 18 H -0.274 1.274 19 H -0.286 1.286 20 C -0.085 4.085 21 C -0.041 4.041 22 H 0.080 0.920 23 C -0.080 4.080 24 C -0.126 4.126 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.127 4.127 28 C -0.132 4.132 29 C -0.096 4.096 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.337 0.663 36 H 0.008 0.992 37 H 0.042 0.958 38 H 0.049 0.951 39 H 0.032 0.968 40 H 0.007 0.993 41 H 0.018 0.982 42 H 0.033 0.967 43 H 0.053 0.947 44 H 0.257 0.743 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.124 0.876 48 H 0.135 0.865 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.128 0.872 52 H 0.070 0.930 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 6.111 23.956 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 H 0.095 0.905 4 C -0.177 4.177 5 C -0.021 4.021 6 H 0.084 0.916 7 N -0.315 5.315 8 C -0.034 4.034 9 C 0.060 3.940 10 C -0.163 4.163 11 C -0.179 4.179 12 C -0.565 4.565 13 H 0.061 0.939 14 C -0.176 4.176 15 N -0.542 5.542 16 Si 0.769 3.231 17 H -0.204 1.204 18 H -0.199 1.199 19 H -0.211 1.211 20 C -0.123 4.123 21 C -0.060 4.060 22 H 0.098 0.902 23 C -0.080 4.080 24 C -0.144 4.144 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.145 4.145 28 C -0.150 4.150 29 C -0.133 4.133 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.156 0.844 36 H 0.026 0.974 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.026 0.974 41 H 0.037 0.963 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.142 0.858 48 H 0.153 0.847 49 H 0.156 0.844 50 H 0.155 0.845 51 H 0.146 0.854 52 H 0.089 0.911 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.263 5.390 23.959 24.590 hybrid contribution -0.353 0.927 -1.579 1.864 sum 0.911 6.316 22.380 23.272 Atomic orbital electron populations 1.21939 0.95231 1.01912 1.01724 1.21006 0.95993 0.99127 0.93880 0.90511 1.22236 1.00764 0.96602 0.98118 1.21616 0.99083 0.91111 0.90318 0.91553 1.60607 1.05823 1.61131 1.03962 1.21769 0.95199 0.95997 0.90424 1.18131 0.92728 0.92407 0.90726 1.21493 0.97260 0.98662 0.98889 1.21639 0.97973 0.97610 1.00649 1.21432 1.08195 1.32141 0.94782 0.93852 1.25526 0.96369 0.94773 1.00961 1.69979 1.29133 1.31209 1.23840 0.85815 0.79417 0.77787 0.80037 1.20352 1.19896 1.21127 1.21424 1.00564 0.98340 0.91938 1.20143 1.00492 0.94407 0.90933 0.90215 1.19979 0.93790 0.98245 0.95984 1.21182 0.95282 0.99917 0.98014 1.21419 1.00657 0.98095 0.94463 1.21432 0.93459 1.00302 1.00148 1.21415 0.96322 0.99055 0.97720 1.21308 0.99948 0.98908 0.94844 1.21560 1.00704 0.93724 0.97341 0.91493 0.93532 0.92627 0.91768 0.93548 0.84361 0.97355 0.93965 0.93174 0.94886 0.97386 0.96302 0.94765 0.92778 0.93322 0.93067 0.92010 0.85838 0.84687 0.84400 0.84470 0.85426 0.91127 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.50 71.98 0.61 -2.28 16 2 C -0.08 -1.56 3.20 -10.79 -0.03 -1.59 16 3 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.14 -3.36 4.70 30.59 0.14 -3.21 16 5 C 0.09 2.45 2.19 44.91 0.10 2.55 16 6 H 0.07 1.97 6.09 -2.39 -0.01 1.95 16 7 N -0.69 -23.75 5.46 -491.55 -2.68 -26.44 16 8 C 0.10 3.97 4.38 86.31 0.38 4.35 16 9 C 0.06 2.96 0.57 -52.92 -0.03 2.93 16 10 C -0.11 -5.24 8.12 71.98 0.58 -4.66 16 11 C -0.12 -5.71 7.83 71.98 0.56 -5.15 16 12 C -0.53 -28.80 8.01 25.60 0.20 -28.59 16 13 H 0.04 2.38 7.75 -2.91 -0.02 2.35 16 14 C 0.02 1.25 5.11 84.65 0.43 1.68 16 15 N -0.90 -50.92 9.38 21.45 0.20 -50.72 16 16 Si 0.94 43.71 29.54 68.60 2.03 45.73 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 C -0.08 -2.07 4.62 30.60 0.14 -1.93 16 21 C -0.04 -0.81 2.09 -11.54 -0.02 -0.84 16 22 H 0.08 1.58 6.16 -2.39 -0.01 1.57 16 23 C -0.08 -1.60 4.78 -19.87 -0.09 -1.69 16 24 C -0.13 -2.43 8.72 22.27 0.19 -2.24 16 25 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 26 C -0.14 -2.18 10.05 22.27 0.22 -1.96 16 27 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 28 C -0.13 -2.47 9.67 22.27 0.22 -2.26 16 29 C -0.10 -1.69 4.55 30.60 0.14 -1.56 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.05 1.14 4.81 -2.38 -0.01 1.13 16 33 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 34 H 0.05 1.28 7.45 -2.39 -0.02 1.27 16 35 H 0.34 11.54 6.61 -89.70 -0.59 10.95 16 36 H 0.01 0.35 7.44 -2.39 -0.02 0.33 16 37 H 0.04 1.84 8.06 -2.38 -0.02 1.82 16 38 H 0.05 2.75 6.04 -2.39 -0.01 2.73 16 39 H 0.03 1.50 7.60 -2.39 -0.02 1.48 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.03 1.42 6.79 -2.39 -0.02 1.41 16 43 H 0.05 2.86 6.01 -2.39 -0.01 2.85 16 44 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 45 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.06 1.50 7.37 -2.39 -0.02 1.48 16 47 H 0.12 2.22 7.10 -2.91 -0.02 2.20 16 48 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 49 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 50 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 51 H 0.13 2.07 7.95 -2.91 -0.02 2.05 16 52 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 53 H 0.07 1.15 7.41 -2.39 -0.02 1.13 16 Total: -1.00 -58.48 391.12 4.01 -54.46 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.27 Total: 27.28 kcal Atomic # 6 Polarization: -54.52 SS G_CDS: 4.20 Total: -50.33 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -2.48 Total: -77.15 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -58.48 4.01 -54.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308432165.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.706 kcal (2) G-P(sol) polarization free energy of solvation -58.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds