Wall clock time and date at job start Tue Mar 31 2020 10:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46831 * 2 1 4 4 C 1.52990 * 109.47586 * 239.99363 * 2 1 3 5 5 C 1.50702 * 109.46941 * 64.99982 * 4 2 1 6 6 H 1.08000 * 120.00326 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99798 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00473 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99919 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47011 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47237 * 119.99674 * 9 7 5 12 12 H 1.48502 * 109.47187 * 239.99868 * 9 7 5 13 13 C 1.53003 * 109.46744 * 119.99210 * 2 1 3 14 14 N 1.46898 * 109.47396 * 296.75768 * 13 2 1 15 15 C 1.47639 * 111.00228 * 292.53872 * 14 13 2 16 16 C 1.50806 * 108.05385 * 150.34385 * 15 14 13 17 17 C 1.53831 * 111.61944 * 95.05841 * 16 15 14 18 18 C 1.54167 * 111.96904 * 319.04371 * 17 16 15 19 19 C 1.52995 * 108.85382 * 79.29415 * 18 17 16 20 20 C 1.50700 * 108.76975 * 197.73755 * 18 17 16 21 21 C 1.38238 * 119.99906 * 69.11608 * 20 18 17 22 22 C 1.38243 * 119.99925 * 179.80916 * 21 20 18 23 23 C 1.38233 * 119.99488 * 0.41780 * 22 21 20 24 24 C 1.38237 * 120.00360 * 359.81635 * 23 22 21 25 25 C 1.38231 * 119.99889 * 359.97438 * 24 23 22 26 26 C 1.50753 * 112.61135 * 318.48542 * 18 17 16 27 27 C 1.39780 * 111.00153 * 163.65135 * 14 13 2 28 28 H 1.09001 * 109.46887 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47187 * 300.00578 * 1 2 3 30 30 H 1.08997 * 109.46651 * 60.00612 * 1 2 3 31 31 H 1.08999 * 109.47391 * 305.00545 * 4 2 1 32 32 H 1.08998 * 109.47410 * 184.99992 * 4 2 1 33 33 H 0.96996 * 120.00266 * 179.97438 * 8 7 5 34 34 H 1.08995 * 109.47447 * 56.76299 * 13 2 1 35 35 H 1.09009 * 109.47104 * 176.75936 * 13 2 1 36 36 H 1.09002 * 109.74478 * 269.99000 * 15 14 13 37 37 H 1.09000 * 109.74264 * 30.70378 * 15 14 13 38 38 H 1.09002 * 109.05366 * 334.50787 * 16 15 14 39 39 H 1.08999 * 109.05535 * 215.60671 * 16 15 14 40 40 H 1.09003 * 108.98041 * 198.39880 * 17 16 15 41 41 H 1.09002 * 108.91003 * 79.64361 * 17 16 15 42 42 H 1.08996 * 109.47556 * 280.26651 * 19 18 17 43 43 H 1.09001 * 109.47484 * 40.26908 * 19 18 17 44 44 H 1.09001 * 109.46904 * 160.26263 * 19 18 17 45 45 H 1.07998 * 120.00253 * 0.02562 * 21 20 18 46 46 H 1.07995 * 120.00221 * 180.21125 * 22 21 20 47 47 H 1.08001 * 119.99946 * 179.78778 * 23 22 21 48 48 H 1.08000 * 119.99914 * 179.97438 * 24 23 22 49 49 H 1.08001 * 119.99648 * 179.97438 * 25 24 23 50 50 H 1.09000 * 109.54254 * 333.15863 * 26 18 17 51 51 H 1.08994 * 109.62355 * 212.92723 * 26 18 17 52 52 H 1.09005 * 109.01454 * 309.71464 * 27 14 13 53 53 H 1.09000 * 109.02059 * 68.53526 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2490 5 6 1.6415 0.0569 -2.4765 6 1 1.0807 0.9744 -2.3757 7 6 1.9926 -0.4026 -3.7282 8 7 2.6758 -1.5196 -3.8510 9 14 1.4991 0.5624 -5.2496 10 1 0.7425 1.7740 -4.8435 11 1 2.7174 0.9662 -5.9965 12 1 0.6444 -0.2862 -6.1184 13 6 2.0399 -0.7211 1.2494 14 7 1.6153 0.0153 2.4474 15 6 2.2933 1.3240 2.5322 16 6 1.3748 2.2805 3.2504 17 6 1.6936 2.3515 4.7536 18 6 2.0064 0.9617 5.3431 19 6 3.4471 0.5875 4.9893 20 6 1.8761 1.0306 6.8428 21 6 0.6318 1.1975 7.4215 22 6 0.5117 1.2567 8.7974 23 6 1.6370 1.1577 9.5942 24 6 2.8818 0.9956 9.0153 25 6 3.0013 0.9321 7.6397 26 6 1.0828 -0.1100 4.8225 27 6 1.7319 -0.7794 3.5915 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 1.6055 -1.7199 -1.2950 32 1 3.1264 -0.7995 -1.2054 33 1 2.9225 -1.8430 -4.7315 34 1 1.6300 -1.7306 1.2791 35 1 3.1285 -0.7717 1.2209 36 1 3.2252 1.2207 3.0881 37 1 2.5015 1.6964 1.5292 38 1 0.3444 1.9497 3.1204 39 1 1.4856 3.2741 2.8160 40 1 0.8368 2.7745 5.2781 41 1 2.5558 3.0017 4.9016 42 1 3.4863 0.2230 3.9628 43 1 4.0853 1.4657 5.0875 44 1 3.7963 -0.1927 5.6655 45 1 -0.2469 1.2781 6.7989 46 1 -0.4607 1.3836 9.2497 47 1 1.5436 1.2073 10.6690 48 1 3.7609 0.9187 9.6379 49 1 3.9739 0.8059 7.1874 50 1 0.1311 0.3370 4.5351 51 1 0.9153 -0.8573 5.5980 52 1 1.2444 -1.7373 3.4097 53 1 2.7881 -0.9532 3.7971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308758835.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:22 Heat of formation + Delta-G solvation = 40.031431 kcal Electronic energy + Delta-G solvation = -27238.238070 eV Core-core repulsion = 23882.031911 eV Total energy + Delta-G solvation = -3356.206159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.02552 -38.93651 -36.31182 -34.08315 -32.60301 -32.02334 -31.28681 -30.06495 -28.27477 -27.15634 -26.49923 -25.03903 -24.27505 -22.55305 -22.46752 -21.71412 -20.16441 -18.81468 -18.45850 -17.37027 -16.45208 -16.06290 -15.77898 -15.17536 -14.92467 -14.78679 -14.46544 -14.15846 -13.95949 -13.86218 -13.56192 -13.13373 -13.06144 -12.63702 -12.51932 -12.23246 -12.13733 -11.98822 -11.68374 -11.54615 -11.38688 -11.15372 -11.04293 -10.92952 -10.82936 -10.77548 -10.56650 -10.47140 -10.29992 -10.24487 -10.15870 -10.02267 -9.49504 -9.09816 -9.06845 -8.91409 -8.81444 -8.30301 -7.64003 -5.95176 -3.95808 1.19020 1.21594 3.33408 3.41048 3.45179 3.60258 4.22295 4.40228 4.50383 4.57344 4.76666 4.79850 4.88621 4.91842 5.06506 5.15662 5.23724 5.27518 5.35540 5.38970 5.40848 5.47289 5.57337 5.60469 5.70961 5.74890 5.78955 5.83620 5.90326 5.94125 5.96303 6.04934 6.08319 6.09698 6.20788 6.23122 6.27908 6.31865 6.34948 6.38353 6.46319 6.50450 6.57349 6.65541 6.78832 6.83091 7.09588 7.24123 7.28026 7.56142 7.73788 7.80277 7.91234 8.05826 8.50377 9.11045 9.67440 11.16399 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.036072 B = 0.002424 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.043545 B =11547.157694 C =11674.632308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.079 4.079 3 H 0.056 0.944 4 C 0.026 3.974 5 C -0.509 4.509 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.066 3.934 14 N -0.550 5.550 15 C 0.037 3.963 16 C -0.114 4.114 17 C -0.101 4.101 18 C -0.017 4.017 19 C -0.178 4.178 20 C -0.064 4.064 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.102 4.102 27 C 0.061 3.939 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.015 0.985 32 H 0.011 0.989 33 H 0.258 0.742 34 H 0.065 0.935 35 H 0.027 0.973 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.126 0.874 50 H 0.075 0.925 51 H 0.064 0.936 52 H 0.065 0.935 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 5.398 25.948 26.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.547 4.547 6 H 0.074 0.926 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.060 4.060 14 N -0.275 5.275 15 C -0.089 4.089 16 C -0.152 4.152 17 C -0.139 4.139 18 C -0.017 4.017 19 C -0.234 4.234 20 C -0.064 4.064 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.068 4.068 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.143 0.857 50 H 0.094 0.906 51 H 0.083 0.917 52 H 0.084 0.916 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.428 5.377 25.801 26.394 hybrid contribution 0.592 0.241 -0.706 0.953 sum -0.836 5.618 25.095 25.730 Atomic orbital electron populations 1.21551 0.95868 1.00313 1.00034 1.21218 0.95899 0.98971 0.93735 0.92614 1.19132 0.95844 0.95562 0.90611 1.21276 1.34310 1.08189 0.90966 0.92558 1.25027 0.95418 0.95114 0.99092 1.69974 1.39282 1.21286 1.23195 0.86592 0.78217 0.80159 0.83371 1.19764 1.21158 1.21127 1.22264 0.97135 0.97104 0.89534 1.58841 1.60835 1.04729 1.03059 1.22301 0.96110 0.89260 1.01228 1.21378 1.01440 0.98893 0.93472 1.22049 1.01158 0.94551 0.96110 1.19330 0.96462 0.96038 0.89903 1.22970 0.95317 1.01424 1.03671 1.20045 0.93086 0.97943 0.95288 1.21038 0.97290 1.00310 0.94732 1.21132 0.98493 1.00329 0.93840 1.21111 0.92896 1.01269 0.99610 1.21147 0.97428 1.00298 0.95004 1.21254 0.98795 1.00608 0.93442 1.21537 0.99017 0.96852 0.96568 1.21162 0.99011 0.96338 0.90307 0.94427 0.93894 0.93009 0.96678 0.97033 0.93211 0.91606 0.95493 0.92127 0.90266 0.90592 0.92174 0.92265 0.92405 0.88650 0.92751 0.92497 0.86077 0.86325 0.86493 0.86405 0.85667 0.90601 0.91729 0.91621 0.94829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.88 37.16 0.33 -2.00 16 2 C -0.08 -1.60 2.28 -90.62 -0.21 -1.81 16 3 H 0.06 1.15 6.25 -51.93 -0.32 0.82 16 4 C 0.03 0.66 4.45 -27.89 -0.12 0.54 16 5 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.07 1.12 4.34 -3.82 -0.02 1.11 16 14 N -0.55 -7.73 3.30 -240.00 -0.79 -8.52 16 15 C 0.04 0.49 5.09 -4.52 -0.02 0.46 16 16 C -0.11 -1.31 5.41 -27.40 -0.15 -1.46 16 17 C -0.10 -1.02 4.87 -25.69 -0.13 -1.15 16 18 C -0.02 -0.17 0.55 -156.18 -0.09 -0.26 16 19 C -0.18 -1.76 5.21 37.15 0.19 -1.56 16 20 C -0.06 -0.63 4.42 -104.62 -0.46 -1.09 16 21 C -0.12 -1.09 8.51 -39.58 -0.34 -1.43 16 22 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 23 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 25 C -0.12 -1.16 8.86 -39.59 -0.35 -1.51 16 26 C -0.10 -1.09 4.41 -27.11 -0.12 -1.21 16 27 C 0.06 0.75 4.83 -6.75 -0.03 0.72 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.75 7.70 -51.93 -0.40 0.35 16 30 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 1.13 7.70 -51.93 -0.40 0.73 16 35 H 0.03 0.47 8.11 -51.92 -0.42 0.05 16 36 H 0.06 0.74 4.00 -51.93 -0.21 0.53 16 37 H 0.08 1.18 5.91 -51.93 -0.31 0.87 16 38 H 0.08 0.95 7.26 -51.93 -0.38 0.58 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.58 7.46 -51.93 -0.39 0.19 16 41 H 0.06 0.57 7.67 -51.93 -0.40 0.18 16 42 H 0.10 1.06 2.68 -51.93 -0.14 0.92 16 43 H 0.05 0.51 7.59 -51.93 -0.39 0.11 16 44 H 0.06 0.53 6.63 -51.93 -0.34 0.19 16 45 H 0.12 1.05 7.87 -52.49 -0.41 0.64 16 46 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 49 H 0.13 1.07 5.93 -52.49 -0.31 0.76 16 50 H 0.08 0.86 7.11 -51.93 -0.37 0.49 16 51 H 0.06 0.67 7.64 -51.93 -0.40 0.27 16 52 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 53 H 0.03 0.41 4.97 -51.93 -0.26 0.15 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -29.52 382.83 -11.47 -40.99 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -9.08 Total: -0.56 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -3.09 Total: -28.10 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.06 Total: -34.87 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.52 -11.47 -40.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308758835.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.022 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds