Wall clock time and date at job start Tue Mar 31 2020 10:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46831 * 2 1 4 4 C 1.52990 * 109.47586 * 239.99363 * 2 1 3 5 5 C 1.50702 * 109.46941 * 64.99982 * 4 2 1 6 6 H 1.08000 * 120.00326 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99798 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00473 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99919 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47011 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47237 * 119.99674 * 9 7 5 12 12 H 1.48502 * 109.47187 * 239.99868 * 9 7 5 13 13 C 1.53003 * 109.46744 * 119.99210 * 2 1 3 14 14 N 1.46898 * 109.47396 * 296.75768 * 13 2 1 15 15 C 1.47639 * 111.00228 * 292.53872 * 14 13 2 16 16 C 1.50806 * 108.05385 * 150.34385 * 15 14 13 17 17 C 1.53831 * 111.61944 * 95.05841 * 16 15 14 18 18 C 1.54167 * 111.96904 * 319.04371 * 17 16 15 19 19 C 1.52995 * 108.85382 * 79.29415 * 18 17 16 20 20 C 1.50700 * 108.76975 * 197.73755 * 18 17 16 21 21 C 1.38238 * 119.99906 * 69.11608 * 20 18 17 22 22 C 1.38243 * 119.99925 * 179.80916 * 21 20 18 23 23 C 1.38233 * 119.99488 * 0.41780 * 22 21 20 24 24 C 1.38237 * 120.00360 * 359.81635 * 23 22 21 25 25 C 1.38231 * 119.99889 * 359.97438 * 24 23 22 26 26 C 1.50753 * 112.61135 * 318.48542 * 18 17 16 27 27 C 1.39780 * 111.00153 * 163.65135 * 14 13 2 28 28 H 1.09001 * 109.46887 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47187 * 300.00578 * 1 2 3 30 30 H 1.08997 * 109.46651 * 60.00612 * 1 2 3 31 31 H 1.08999 * 109.47391 * 305.00545 * 4 2 1 32 32 H 1.08998 * 109.47410 * 184.99992 * 4 2 1 33 33 H 0.96996 * 120.00266 * 179.97438 * 8 7 5 34 34 H 1.08995 * 109.47447 * 56.76299 * 13 2 1 35 35 H 1.09009 * 109.47104 * 176.75936 * 13 2 1 36 36 H 1.09002 * 109.74478 * 269.99000 * 15 14 13 37 37 H 1.09000 * 109.74264 * 30.70378 * 15 14 13 38 38 H 1.09002 * 109.05366 * 334.50787 * 16 15 14 39 39 H 1.08999 * 109.05535 * 215.60671 * 16 15 14 40 40 H 1.09003 * 108.98041 * 198.39880 * 17 16 15 41 41 H 1.09002 * 108.91003 * 79.64361 * 17 16 15 42 42 H 1.08996 * 109.47556 * 280.26651 * 19 18 17 43 43 H 1.09001 * 109.47484 * 40.26908 * 19 18 17 44 44 H 1.09001 * 109.46904 * 160.26263 * 19 18 17 45 45 H 1.07998 * 120.00253 * 0.02562 * 21 20 18 46 46 H 1.07995 * 120.00221 * 180.21125 * 22 21 20 47 47 H 1.08001 * 119.99946 * 179.78778 * 23 22 21 48 48 H 1.08000 * 119.99914 * 179.97438 * 24 23 22 49 49 H 1.08001 * 119.99648 * 179.97438 * 25 24 23 50 50 H 1.09000 * 109.54254 * 333.15863 * 26 18 17 51 51 H 1.08994 * 109.62355 * 212.92723 * 26 18 17 52 52 H 1.09005 * 109.01454 * 309.71464 * 27 14 13 53 53 H 1.09000 * 109.02059 * 68.53526 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2490 5 6 1.6415 0.0569 -2.4765 6 1 1.0807 0.9744 -2.3757 7 6 1.9926 -0.4026 -3.7282 8 7 2.6758 -1.5196 -3.8510 9 14 1.4991 0.5624 -5.2496 10 1 0.7425 1.7740 -4.8435 11 1 2.7174 0.9662 -5.9965 12 1 0.6444 -0.2862 -6.1184 13 6 2.0399 -0.7211 1.2494 14 7 1.6153 0.0153 2.4474 15 6 2.2933 1.3240 2.5322 16 6 1.3748 2.2805 3.2504 17 6 1.6936 2.3515 4.7536 18 6 2.0064 0.9617 5.3431 19 6 3.4471 0.5875 4.9893 20 6 1.8761 1.0306 6.8428 21 6 0.6318 1.1975 7.4215 22 6 0.5117 1.2567 8.7974 23 6 1.6370 1.1577 9.5942 24 6 2.8818 0.9956 9.0153 25 6 3.0013 0.9321 7.6397 26 6 1.0828 -0.1100 4.8225 27 6 1.7319 -0.7794 3.5915 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 1.6055 -1.7199 -1.2950 32 1 3.1264 -0.7995 -1.2054 33 1 2.9225 -1.8430 -4.7315 34 1 1.6300 -1.7306 1.2791 35 1 3.1285 -0.7717 1.2209 36 1 3.2252 1.2207 3.0881 37 1 2.5015 1.6964 1.5292 38 1 0.3444 1.9497 3.1204 39 1 1.4856 3.2741 2.8160 40 1 0.8368 2.7745 5.2781 41 1 2.5558 3.0017 4.9016 42 1 3.4863 0.2230 3.9628 43 1 4.0853 1.4657 5.0875 44 1 3.7963 -0.1927 5.6655 45 1 -0.2469 1.2781 6.7989 46 1 -0.4607 1.3836 9.2497 47 1 1.5436 1.2073 10.6690 48 1 3.7609 0.9187 9.6379 49 1 3.9739 0.8059 7.1874 50 1 0.1311 0.3370 4.5351 51 1 0.9153 -0.8573 5.5980 52 1 1.2444 -1.7373 3.4097 53 1 2.7881 -0.9532 3.7971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308758835.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:21 Heat of formation + Delta-G solvation = 27.490438 kcal Electronic energy + Delta-G solvation = -27238.781888 eV Core-core repulsion = 23882.031911 eV Total energy + Delta-G solvation = -3356.749978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.90979 -39.78428 -37.60156 -35.61919 -33.94806 -33.52847 -31.94112 -30.96823 -29.15074 -28.86572 -27.86619 -26.27733 -25.47094 -24.16885 -23.21516 -22.48410 -21.27084 -20.37057 -19.31242 -18.54313 -18.06785 -17.02567 -16.93595 -16.44099 -16.03251 -15.72896 -15.67356 -15.52521 -14.97703 -14.85514 -14.44407 -14.30735 -14.14972 -13.98189 -13.82954 -13.42432 -13.26474 -13.09400 -13.01538 -12.78385 -12.71858 -12.52426 -12.38966 -12.21942 -12.15782 -11.98188 -11.81075 -11.73416 -11.60782 -11.43282 -11.36592 -11.08514 -11.01799 -10.85861 -10.78415 -10.51638 -9.74683 -9.50661 -8.79031 -8.16196 -6.24772 0.53099 0.56633 1.39899 1.40492 1.53452 2.42700 2.94367 3.07856 3.17170 3.62823 3.79245 3.89958 4.10670 4.14547 4.20182 4.22386 4.28499 4.32671 4.35314 4.40415 4.46090 4.58188 4.58997 4.66320 4.68479 4.75886 4.78262 4.83476 4.91695 4.97790 4.98426 5.00564 5.10085 5.11369 5.15135 5.22461 5.25844 5.29407 5.32677 5.33887 5.35931 5.47275 5.52267 5.53884 5.58389 5.63884 5.69135 5.69672 5.83777 5.85800 5.92607 6.19637 6.26091 6.36969 6.69625 6.91777 7.43254 8.96002 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.036072 B = 0.002424 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.043545 B =11547.157694 C =11674.632308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.069 4.069 3 H 0.054 0.946 4 C 0.032 3.968 5 C -0.524 4.524 6 H 0.060 0.940 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.078 3.922 14 N -0.547 5.547 15 C 0.036 3.964 16 C -0.108 4.108 17 C -0.095 4.095 18 C -0.012 4.012 19 C -0.175 4.175 20 C -0.074 4.074 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.091 4.091 27 C 0.058 3.942 28 H 0.032 0.968 29 H 0.065 0.935 30 H 0.034 0.966 31 H -0.012 1.012 32 H -0.016 1.016 33 H 0.261 0.739 34 H 0.062 0.938 35 H 0.019 0.981 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.125 0.875 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.130 0.870 50 H 0.071 0.929 51 H 0.069 0.931 52 H 0.061 0.939 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 6.708 27.641 28.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 H 0.072 0.928 4 C -0.005 4.005 5 C -0.562 4.562 6 H 0.078 0.922 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.050 4.050 14 N -0.271 5.271 15 C -0.090 4.090 16 C -0.146 4.146 17 C -0.133 4.133 18 C -0.012 4.012 19 C -0.230 4.230 20 C -0.074 4.074 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.154 4.154 24 C -0.146 4.146 25 C -0.153 4.153 26 C -0.129 4.129 27 C -0.071 4.071 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.007 0.993 32 H 0.003 0.997 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.153 0.847 49 H 0.148 0.852 50 H 0.090 0.910 51 H 0.088 0.912 52 H 0.080 0.920 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.049 6.698 27.514 28.392 hybrid contribution 0.811 -0.191 -1.164 1.431 sum -1.239 6.507 26.350 27.170 Atomic orbital electron populations 1.21434 0.94873 1.00096 1.00248 1.21012 0.96530 0.98374 0.92865 0.92793 1.19020 0.93988 0.94646 0.92892 1.21654 1.34086 1.08412 0.92047 0.92222 1.25952 0.95377 0.96136 1.02638 1.70107 1.40468 1.22972 1.24135 0.85473 0.78045 0.78915 0.79078 1.18603 1.20558 1.20594 1.21976 0.96473 0.96794 0.89710 1.58821 1.60786 1.04925 1.02581 1.22351 0.97182 0.88911 1.00523 1.21300 1.00331 0.98521 0.94410 1.21994 1.01567 0.94836 0.94895 1.19242 0.96110 0.95552 0.90309 1.22903 0.95538 1.01839 1.02759 1.20033 0.93546 0.98898 0.94948 1.21177 0.97302 1.00648 0.95347 1.21405 0.99540 0.99865 0.93674 1.21424 0.92693 1.00500 1.00775 1.21424 0.98364 0.99840 0.94980 1.21411 0.98948 1.00917 0.93994 1.21432 0.98755 0.97076 0.95650 1.21236 0.99586 0.96123 0.90189 0.94835 0.91574 0.94707 0.99319 0.99718 0.93010 0.91935 0.96271 0.90985 0.92269 0.91467 0.91630 0.91723 0.91979 0.90042 0.92132 0.91971 0.85733 0.84650 0.84528 0.84712 0.85174 0.91001 0.91201 0.92047 0.94307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 8.88 71.98 0.64 -3.58 16 2 C -0.07 -2.84 2.28 -10.79 -0.02 -2.86 16 3 H 0.05 2.25 6.25 -2.39 -0.01 2.23 16 4 C 0.03 1.70 4.45 29.85 0.13 1.84 16 5 C -0.52 -29.88 8.41 25.60 0.22 -29.67 16 6 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 8 N -0.94 -57.70 13.29 21.45 0.28 -57.41 16 9 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 10 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.08 2.68 4.34 86.30 0.37 3.06 16 14 N -0.55 -15.08 3.30 -913.21 -3.01 -18.10 16 15 C 0.04 0.92 5.09 85.45 0.44 1.36 16 16 C -0.11 -2.33 5.41 30.16 0.16 -2.17 16 17 C -0.10 -1.76 4.87 31.27 0.15 -1.60 16 18 C -0.01 -0.22 0.55 -53.26 -0.03 -0.25 16 19 C -0.17 -3.19 5.21 71.98 0.37 -2.81 16 20 C -0.07 -1.33 4.42 -19.87 -0.09 -1.42 16 21 C -0.13 -2.16 8.51 22.27 0.19 -1.97 16 22 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 23 C -0.14 -1.95 10.05 22.27 0.22 -1.72 16 24 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 25 C -0.13 -2.30 8.86 22.27 0.20 -2.10 16 26 C -0.09 -1.82 4.41 30.35 0.13 -1.68 16 27 C 0.06 1.37 4.83 88.07 0.43 1.79 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 2.24 7.70 -2.39 -0.02 2.22 16 30 H 0.03 1.44 6.95 -2.39 -0.02 1.42 16 31 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 32 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.06 2.19 7.70 -2.39 -0.02 2.17 16 35 H 0.02 0.68 8.11 -2.38 -0.02 0.66 16 36 H 0.07 1.70 4.00 -2.39 -0.01 1.69 16 37 H 0.06 1.75 5.91 -2.39 -0.01 1.74 16 38 H 0.07 1.59 7.26 -2.39 -0.02 1.57 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.14 7.46 -2.39 -0.02 1.12 16 41 H 0.06 1.11 7.67 -2.39 -0.02 1.09 16 42 H 0.08 1.72 2.68 -2.39 -0.01 1.72 16 43 H 0.06 1.03 7.59 -2.39 -0.02 1.01 16 44 H 0.06 1.07 6.63 -2.39 -0.02 1.05 16 45 H 0.12 1.95 7.87 -2.91 -0.02 1.93 16 46 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 47 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 48 H 0.13 1.49 8.06 -2.91 -0.02 1.46 16 49 H 0.13 1.99 5.93 -2.91 -0.02 1.98 16 50 H 0.07 1.51 7.11 -2.39 -0.02 1.49 16 51 H 0.07 1.34 7.64 -2.39 -0.02 1.32 16 52 H 0.06 1.51 7.73 -2.38 -0.02 1.50 16 53 H 0.04 0.91 4.97 -2.39 -0.01 0.90 16 Total: -1.00 -63.60 382.83 4.59 -59.01 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.87 Total: 16.51 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 4.42 Total: -46.98 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -2.73 Total: -75.51 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -63.60 4.59 -59.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308758835.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.501 kcal (2) G-P(sol) polarization free energy of solvation -63.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds