Wall clock time and date at job start Tue Mar 31 2020 10:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.78443 * 2 1 4 4 C 1.54231 * 109.63092 * 239.50974 * 2 1 3 5 5 C 1.45547 * 112.40761 * 160.28845 * 4 2 1 6 6 C 1.54242 * 112.39933 * 61.94358 * 5 4 2 7 7 C 1.50478 * 108.52330 * 280.01987 * 6 5 4 8 8 H 1.09002 * 108.87754 * 333.46704 * 7 6 5 9 9 N 1.46900 * 108.87508 * 214.92427 * 7 6 5 10 10 C 1.46903 * 110.99958 * 84.99962 * 9 7 6 11 11 H 1.09004 * 109.46826 * 35.00462 * 10 9 7 12 12 C 1.53005 * 109.46820 * 154.99632 * 10 9 7 13 13 C 1.52993 * 109.47445 * 295.00296 * 12 10 9 14 14 C 1.50700 * 109.47019 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00334 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00213 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99704 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00325 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46957 * 60.00055 * 18 16 14 20 20 H 1.48498 * 109.47403 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47242 * 300.00184 * 18 16 14 22 22 C 1.50693 * 109.46978 * 274.99694 * 10 9 7 23 23 C 1.38230 * 120.00325 * 319.72735 * 22 10 9 24 24 C 1.38239 * 119.99900 * 179.78553 * 23 22 10 25 25 C 1.38235 * 120.00049 * 0.44246 * 24 23 22 26 26 C 1.38233 * 120.00133 * 359.81406 * 25 24 23 27 27 C 1.38241 * 119.99880 * 359.97438 * 26 25 24 28 28 C 1.53998 * 112.55035 * 94.07079 * 7 6 5 29 29 C 1.50470 * 109.62700 * 120.48467 * 2 1 3 30 30 H 1.08996 * 109.47441 * 299.50998 * 1 2 3 31 31 H 1.08999 * 109.46912 * 59.51883 * 1 2 3 32 32 H 1.09007 * 109.46777 * 179.50678 * 1 2 3 33 33 H 1.08994 * 108.89698 * 281.04715 * 4 2 1 34 34 H 1.09005 * 108.89740 * 39.63745 * 4 2 1 35 35 H 1.09005 * 108.89614 * 182.68690 * 5 4 2 36 36 H 1.08996 * 108.90005 * 301.28165 * 5 4 2 37 37 H 1.09000 * 109.63220 * 39.72693 * 6 5 4 38 38 H 1.08995 * 109.63292 * 160.11694 * 6 5 4 39 39 H 1.00902 * 111.00439 * 208.95326 * 9 7 6 40 40 H 1.09001 * 109.46924 * 55.00390 * 12 10 9 41 41 H 1.09000 * 109.46783 * 174.99620 * 12 10 9 42 42 H 1.09001 * 109.47136 * 299.99964 * 13 12 10 43 43 H 1.08992 * 109.47354 * 59.99925 * 13 12 10 44 44 H 0.97000 * 120.00005 * 179.97438 * 17 16 14 45 45 H 1.07992 * 120.00048 * 0.02562 * 23 22 10 46 46 H 1.08004 * 120.00041 * 180.27380 * 24 23 22 47 47 H 1.08003 * 120.00147 * 179.82834 * 25 24 23 48 48 H 1.07998 * 120.00633 * 179.97438 * 26 25 24 49 49 H 1.07997 * 120.00117 * 180.02562 * 27 26 25 50 50 H 1.09001 * 108.87577 * 197.51626 * 28 7 6 51 51 H 1.09001 * 108.72188 * 79.25669 * 28 7 6 52 52 H 1.09002 * 108.88028 * 334.64639 * 29 2 1 53 53 H 1.08999 * 108.87808 * 93.19034 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0482 -0.7371 -1.2518 5 6 3.4277 -0.3952 -1.5656 6 6 4.4029 -0.7940 -0.4392 7 6 4.3394 0.2520 0.6407 8 1 4.0330 1.1992 0.1967 9 7 5.6773 0.4128 1.2258 10 6 6.4856 1.3550 0.4404 11 1 5.8438 2.1425 0.0450 12 6 7.5603 1.9747 1.3360 13 6 6.8934 2.8211 2.4221 14 6 7.9520 3.4318 3.3037 15 1 8.9961 3.2356 3.1091 16 6 7.5877 4.2412 4.3588 17 7 6.3163 4.4798 4.5961 18 14 8.8998 4.9977 5.4521 19 1 9.7922 5.8565 4.6326 20 1 8.2526 5.8194 6.5062 21 1 9.6980 3.9183 6.0870 22 6 7.1434 0.6227 -0.7006 23 6 7.6649 -0.6418 -0.5012 24 6 8.2644 -1.3154 -1.5490 25 6 8.3505 -0.7207 -2.7939 26 6 7.8338 0.5461 -2.9920 27 6 7.2303 1.2179 -1.9453 28 6 3.3461 -0.1135 1.7593 29 6 2.0355 -0.7190 1.2214 30 1 -0.3634 0.5062 0.8943 31 1 -0.3633 0.5213 -0.8856 32 1 -0.3633 -1.0277 -0.0088 33 1 1.9807 -1.8116 -1.0820 34 1 1.4188 -0.4743 -2.1021 35 1 3.7187 -0.9081 -2.4824 36 1 3.4970 0.6806 -1.7263 37 1 4.1130 -1.7615 -0.0292 38 1 5.4163 -0.8534 -0.8361 39 1 5.6177 0.7040 2.1901 40 1 8.1464 1.1823 1.8015 41 1 8.2150 2.6054 0.7346 42 1 6.3073 3.6134 1.9565 43 1 6.2387 2.1904 3.0234 44 1 6.0600 5.0489 5.3386 45 1 7.6005 -1.1052 0.4722 46 1 8.6679 -2.3052 -1.3943 47 1 8.8213 -1.2458 -3.6119 48 1 7.9014 1.0109 -3.9645 49 1 6.8262 2.2073 -2.1001 50 1 3.1102 0.7854 2.3290 51 1 3.8192 -0.8350 2.4253 52 1 1.2761 -0.6658 2.0015 53 1 2.2080 -1.7651 0.9686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308785740.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:44 Heat of formation + Delta-G solvation = -11.055504 kcal Electronic energy + Delta-G solvation = -27511.988736 eV Core-core repulsion = 24153.567280 eV Total energy + Delta-G solvation = -3358.421455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.84883 -38.72418 -36.35186 -33.75416 -32.67648 -32.44509 -30.62321 -30.31775 -29.61927 -27.16975 -25.90553 -24.07519 -23.26217 -22.76012 -22.22173 -20.95064 -20.39393 -19.50761 -18.88493 -16.74085 -16.22511 -15.64476 -15.44697 -15.03512 -14.82367 -14.46699 -14.44177 -14.26068 -13.86602 -13.51526 -13.31277 -13.06435 -12.94215 -12.88637 -12.58840 -12.38718 -12.26741 -12.11317 -11.80821 -11.67392 -11.42380 -11.00419 -10.92792 -10.87726 -10.71527 -10.60540 -10.55750 -10.49189 -10.43636 -10.21028 -10.13377 -10.02448 -9.76982 -9.37431 -9.16080 -8.62310 -8.37186 -8.22330 -8.01915 -6.02250 -4.04315 1.65175 1.70233 3.32695 3.37002 3.39849 4.07637 4.43180 4.46621 4.60404 4.74499 4.93374 5.11164 5.17346 5.19792 5.21924 5.26114 5.31929 5.34017 5.42584 5.45179 5.47811 5.59250 5.67943 5.74158 5.77144 5.81485 5.83937 5.90065 5.91464 6.00680 6.04043 6.10754 6.13436 6.21629 6.25984 6.29406 6.29768 6.34490 6.38402 6.49998 6.51939 6.55503 6.66513 6.69634 6.76968 6.86961 6.98947 7.03590 7.29994 7.55955 7.60104 7.77113 7.92279 7.98105 8.40110 9.01855 9.59977 11.08826 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.009371 B = 0.004365 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.229403 B = 6413.468651 C = 8818.474812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.113 4.113 7 C 0.095 3.905 8 H 0.038 0.962 9 N -0.683 5.683 10 C 0.124 3.876 11 H 0.047 0.953 12 C -0.108 4.108 13 C 0.023 3.977 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.052 4.052 23 C -0.089 4.089 24 C -0.130 4.130 25 C -0.134 4.134 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.354 0.646 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.012 0.988 43 H 0.016 0.984 44 H 0.261 0.739 45 H 0.129 0.871 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.060 0.940 51 H 0.068 0.932 52 H 0.058 0.942 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 -12.213 -13.501 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.091 0.909 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.015 4.015 8 H 0.056 0.944 9 N -0.317 5.317 10 C 0.014 3.986 11 H 0.065 0.935 12 C -0.146 4.146 13 C -0.014 4.014 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.053 4.053 23 C -0.107 4.107 24 C -0.148 4.148 25 C -0.152 4.152 26 C -0.143 4.143 27 C -0.141 4.141 28 C -0.161 4.161 29 C -0.145 4.145 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.177 0.823 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.031 0.969 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.147 0.853 46 H 0.132 0.868 47 H 0.130 0.870 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.079 0.921 51 H 0.087 0.913 52 H 0.077 0.923 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.917 -12.659 -13.653 19.862 hybrid contribution 0.266 1.394 0.858 1.658 sum -6.651 -11.265 -12.796 18.299 Atomic orbital electron populations 1.21882 0.95486 1.01389 1.01452 1.20934 0.94966 1.00234 0.94997 0.90932 1.20537 0.96620 1.00082 0.97368 1.20456 0.95142 1.01309 0.98674 1.21577 1.00313 0.98364 0.94827 1.21337 0.88062 0.97626 0.94450 0.94379 1.60671 1.13066 1.50946 1.07027 1.20641 0.94973 0.90989 0.91986 0.93502 1.21833 0.96553 0.99043 0.97189 1.19113 0.95885 0.94056 0.92330 1.21179 0.93119 1.29073 1.12413 0.92727 1.25001 0.95254 0.96468 0.97558 1.69945 1.15301 1.38081 1.30157 0.86671 0.81860 0.79306 0.80258 1.20268 1.21316 1.20206 1.20024 0.96787 0.94482 0.93985 1.21032 0.96139 0.94366 0.99137 1.21137 1.00365 0.99838 0.93422 1.21009 1.01230 0.95791 0.97191 1.20990 0.99450 0.95278 0.98564 1.21035 1.00469 0.99796 0.92845 1.22095 0.94824 1.01315 0.97851 1.21334 0.96466 0.99633 0.97045 0.92742 0.92998 0.92946 0.92465 0.92845 0.92757 0.92566 0.92250 0.89871 0.82320 0.92260 0.92677 0.96943 0.96539 0.92976 0.85310 0.86759 0.86977 0.86826 0.86675 0.92117 0.91350 0.92323 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.87 37.16 0.33 -1.00 16 2 C -0.09 -0.99 2.40 -91.24 -0.22 -1.21 16 3 H 0.07 0.88 6.97 -51.93 -0.36 0.51 16 4 C -0.11 -1.11 4.68 -29.60 -0.14 -1.25 16 5 C -0.12 -1.35 5.26 -29.60 -0.16 -1.51 16 6 C -0.11 -1.45 5.13 -27.34 -0.14 -1.59 16 7 C 0.09 1.33 2.02 -68.45 -0.14 1.20 16 8 H 0.04 0.59 5.84 -51.93 -0.30 0.29 16 9 N -0.68 -10.91 5.38 -101.73 -0.55 -11.46 16 10 C 0.12 2.11 2.24 -68.86 -0.15 1.95 16 11 H 0.05 0.84 7.26 -51.93 -0.38 0.47 16 12 C -0.11 -2.20 4.72 -26.73 -0.13 -2.33 16 13 C 0.02 0.58 4.80 -27.89 -0.13 0.44 16 14 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.05 -0.80 3.34 -104.63 -0.35 -1.15 16 23 C -0.09 -1.29 7.67 -39.58 -0.30 -1.59 16 24 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 25 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 26 C -0.12 -1.58 10.05 -39.58 -0.40 -1.97 16 27 C -0.12 -1.75 9.67 -39.58 -0.38 -2.14 16 28 C -0.12 -1.61 5.06 -25.65 -0.13 -1.74 16 29 C -0.11 -1.18 4.89 -27.44 -0.13 -1.31 16 30 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.57 7.47 -51.93 -0.39 0.18 16 34 H 0.05 0.51 7.97 -51.93 -0.41 0.09 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.69 7.46 -51.93 -0.39 0.30 16 37 H 0.06 0.75 6.98 -51.93 -0.36 0.39 16 38 H 0.08 1.17 4.23 -51.93 -0.22 0.95 16 39 H 0.35 6.31 6.03 -39.29 -0.24 6.07 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.42 6.43 -51.93 -0.33 0.09 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.13 1.93 7.73 -52.49 -0.41 1.52 16 46 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 47 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 48 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 49 H 0.12 1.56 8.04 -52.49 -0.42 1.14 16 50 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 52 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 53 H 0.06 0.64 6.63 -51.93 -0.34 0.29 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -28.38 395.15 -12.22 -40.60 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -9.56 Total: 6.59 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: -3.78 Total: -32.52 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.19 Total: -37.19 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.38 -12.22 -40.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308785740.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.546 kcal (2) G-P(sol) polarization free energy of solvation -28.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds