Wall clock time and date at job start Tue Mar 31 2020 10:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.78443 * 2 1 4 4 C 1.54231 * 109.63092 * 239.50974 * 2 1 3 5 5 C 1.45547 * 112.40761 * 160.28845 * 4 2 1 6 6 C 1.54242 * 112.39933 * 61.94358 * 5 4 2 7 7 C 1.50478 * 108.52330 * 280.01987 * 6 5 4 8 8 H 1.09002 * 108.87754 * 333.46704 * 7 6 5 9 9 N 1.46900 * 108.87508 * 214.92427 * 7 6 5 10 10 C 1.46903 * 110.99958 * 84.99962 * 9 7 6 11 11 H 1.09004 * 109.46826 * 35.00462 * 10 9 7 12 12 C 1.53005 * 109.46820 * 154.99632 * 10 9 7 13 13 C 1.52993 * 109.47445 * 295.00296 * 12 10 9 14 14 C 1.50700 * 109.47019 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00334 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00213 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99704 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00325 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46957 * 60.00055 * 18 16 14 20 20 H 1.48498 * 109.47403 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47242 * 300.00184 * 18 16 14 22 22 C 1.50693 * 109.46978 * 274.99694 * 10 9 7 23 23 C 1.38230 * 120.00325 * 319.72735 * 22 10 9 24 24 C 1.38239 * 119.99900 * 179.78553 * 23 22 10 25 25 C 1.38235 * 120.00049 * 0.44246 * 24 23 22 26 26 C 1.38233 * 120.00133 * 359.81406 * 25 24 23 27 27 C 1.38241 * 119.99880 * 359.97438 * 26 25 24 28 28 C 1.53998 * 112.55035 * 94.07079 * 7 6 5 29 29 C 1.50470 * 109.62700 * 120.48467 * 2 1 3 30 30 H 1.08996 * 109.47441 * 299.50998 * 1 2 3 31 31 H 1.08999 * 109.46912 * 59.51883 * 1 2 3 32 32 H 1.09007 * 109.46777 * 179.50678 * 1 2 3 33 33 H 1.08994 * 108.89698 * 281.04715 * 4 2 1 34 34 H 1.09005 * 108.89740 * 39.63745 * 4 2 1 35 35 H 1.09005 * 108.89614 * 182.68690 * 5 4 2 36 36 H 1.08996 * 108.90005 * 301.28165 * 5 4 2 37 37 H 1.09000 * 109.63220 * 39.72693 * 6 5 4 38 38 H 1.08995 * 109.63292 * 160.11694 * 6 5 4 39 39 H 1.00902 * 111.00439 * 208.95326 * 9 7 6 40 40 H 1.09001 * 109.46924 * 55.00390 * 12 10 9 41 41 H 1.09000 * 109.46783 * 174.99620 * 12 10 9 42 42 H 1.09001 * 109.47136 * 299.99964 * 13 12 10 43 43 H 1.08992 * 109.47354 * 59.99925 * 13 12 10 44 44 H 0.97000 * 120.00005 * 179.97438 * 17 16 14 45 45 H 1.07992 * 120.00048 * 0.02562 * 23 22 10 46 46 H 1.08004 * 120.00041 * 180.27380 * 24 23 22 47 47 H 1.08003 * 120.00147 * 179.82834 * 25 24 23 48 48 H 1.07998 * 120.00633 * 179.97438 * 26 25 24 49 49 H 1.07997 * 120.00117 * 180.02562 * 27 26 25 50 50 H 1.09001 * 108.87577 * 197.51626 * 28 7 6 51 51 H 1.09001 * 108.72188 * 79.25669 * 28 7 6 52 52 H 1.09002 * 108.88028 * 334.64639 * 29 2 1 53 53 H 1.08999 * 108.87808 * 93.19034 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0482 -0.7371 -1.2518 5 6 3.4277 -0.3952 -1.5656 6 6 4.4029 -0.7940 -0.4392 7 6 4.3394 0.2520 0.6407 8 1 4.0330 1.1992 0.1967 9 7 5.6773 0.4128 1.2258 10 6 6.4856 1.3550 0.4404 11 1 5.8438 2.1425 0.0450 12 6 7.5603 1.9747 1.3360 13 6 6.8934 2.8211 2.4221 14 6 7.9520 3.4318 3.3037 15 1 8.9961 3.2356 3.1091 16 6 7.5877 4.2412 4.3588 17 7 6.3163 4.4798 4.5961 18 14 8.8998 4.9977 5.4521 19 1 9.7922 5.8565 4.6326 20 1 8.2526 5.8194 6.5062 21 1 9.6980 3.9183 6.0870 22 6 7.1434 0.6227 -0.7006 23 6 7.6649 -0.6418 -0.5012 24 6 8.2644 -1.3154 -1.5490 25 6 8.3505 -0.7207 -2.7939 26 6 7.8338 0.5461 -2.9920 27 6 7.2303 1.2179 -1.9453 28 6 3.3461 -0.1135 1.7593 29 6 2.0355 -0.7190 1.2214 30 1 -0.3634 0.5062 0.8943 31 1 -0.3633 0.5213 -0.8856 32 1 -0.3633 -1.0277 -0.0088 33 1 1.9807 -1.8116 -1.0820 34 1 1.4188 -0.4743 -2.1021 35 1 3.7187 -0.9081 -2.4824 36 1 3.4970 0.6806 -1.7263 37 1 4.1130 -1.7615 -0.0292 38 1 5.4163 -0.8534 -0.8361 39 1 5.6177 0.7040 2.1901 40 1 8.1464 1.1823 1.8015 41 1 8.2150 2.6054 0.7346 42 1 6.3073 3.6134 1.9565 43 1 6.2387 2.1904 3.0234 44 1 6.0600 5.0489 5.3386 45 1 7.6005 -1.1052 0.4722 46 1 8.6679 -2.3052 -1.3943 47 1 8.8213 -1.2458 -3.6119 48 1 7.9014 1.0109 -3.9645 49 1 6.8262 2.2073 -2.1001 50 1 3.1102 0.7854 2.3290 51 1 3.8192 -0.8350 2.4253 52 1 1.2761 -0.6658 2.0015 53 1 2.2080 -1.7651 0.9686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308785740.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:43 Heat of formation + Delta-G solvation = -22.963057 kcal Electronic energy + Delta-G solvation = -27512.505086 eV Core-core repulsion = 24153.567280 eV Total energy + Delta-G solvation = -3358.937805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.98391 -39.73508 -37.64119 -35.47375 -34.10664 -33.56528 -31.87505 -31.65998 -30.82945 -28.38058 -27.37145 -25.48279 -24.57929 -23.74717 -23.29491 -22.51817 -21.38016 -20.89993 -19.96749 -18.60077 -17.53361 -16.84313 -16.69312 -16.56476 -16.07588 -15.82317 -15.38824 -15.33171 -15.10455 -14.86230 -14.47153 -14.26694 -14.13920 -13.97972 -13.82269 -13.79368 -13.48698 -13.41389 -13.14838 -12.87460 -12.76614 -12.59219 -12.52167 -12.28084 -12.00778 -11.84072 -11.71197 -11.67793 -11.52044 -11.44765 -11.31320 -11.21102 -11.14457 -11.09638 -10.98595 -10.55826 -9.67631 -9.41872 -9.32579 -8.21412 -6.32163 0.58313 0.65020 1.38559 1.41043 1.48988 2.39585 2.99292 3.11470 3.19641 3.66236 3.76622 3.96331 4.04003 4.11488 4.16049 4.26753 4.29251 4.29544 4.34599 4.42992 4.45161 4.46485 4.52463 4.62557 4.68625 4.72372 4.78320 4.81796 4.88822 4.92034 5.00588 5.02337 5.11779 5.13663 5.15993 5.18795 5.22765 5.24873 5.31674 5.33112 5.40603 5.45432 5.48387 5.51615 5.59883 5.61260 5.68019 5.70345 5.75177 5.81046 5.86023 6.22226 6.24591 6.30584 6.48418 6.83101 7.36863 8.89563 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.009371 B = 0.004365 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.229403 B = 6413.468651 C = 8818.474812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.050 0.950 4 C -0.106 4.106 5 C -0.112 4.112 6 C -0.106 4.106 7 C 0.100 3.900 8 H 0.019 0.981 9 N -0.679 5.679 10 C 0.136 3.864 11 H 0.029 0.971 12 C -0.092 4.092 13 C 0.033 3.967 14 C -0.544 4.544 15 H 0.056 0.944 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.961 3.039 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.267 1.267 22 C -0.067 4.067 23 C -0.099 4.099 24 C -0.129 4.129 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.137 4.137 28 C -0.120 4.120 29 C -0.101 4.101 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.339 0.661 40 H 0.056 0.944 41 H 0.049 0.951 42 H -0.018 1.018 43 H 0.002 0.998 44 H 0.263 0.737 45 H 0.119 0.881 46 H 0.138 0.862 47 H 0.144 0.856 48 H 0.139 0.861 49 H 0.113 0.887 50 H 0.039 0.961 51 H 0.066 0.934 52 H 0.065 0.935 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 -13.916 -15.070 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.069 0.931 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.143 4.143 7 C -0.010 4.010 8 H 0.037 0.963 9 N -0.311 5.311 10 C 0.026 3.974 11 H 0.047 0.953 12 C -0.130 4.130 13 C -0.005 4.005 14 C -0.582 4.582 15 H 0.074 0.926 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.785 3.215 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.068 4.068 23 C -0.117 4.117 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.155 4.155 28 C -0.158 4.158 29 C -0.139 4.139 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.160 0.840 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.001 0.999 43 H 0.020 0.980 44 H 0.072 0.928 45 H 0.137 0.863 46 H 0.156 0.844 47 H 0.162 0.838 48 H 0.157 0.843 49 H 0.131 0.869 50 H 0.058 0.942 51 H 0.084 0.916 52 H 0.084 0.916 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.301 -14.374 -15.244 21.879 hybrid contribution 0.081 1.927 1.309 2.331 sum -6.220 -12.446 -13.935 19.692 Atomic orbital electron populations 1.21845 0.94040 1.02274 1.01677 1.20922 0.96180 0.98987 0.95122 0.93116 1.20507 0.95792 1.00563 0.97433 1.20406 0.95670 1.00470 0.98413 1.21494 1.00373 0.97879 0.94602 1.21376 0.87146 0.97398 0.95056 0.96288 1.60797 1.14226 1.50039 1.06055 1.20389 0.93841 0.91013 0.92136 0.95333 1.21583 0.97019 0.98141 0.96250 1.18953 0.95065 0.93432 0.93006 1.21612 0.93748 1.29582 1.13208 0.92559 1.25902 0.97527 0.96866 0.99038 1.70077 1.17367 1.38730 1.30826 0.85565 0.79020 0.78600 0.78270 1.19387 1.20740 1.19183 1.19792 0.98197 0.95130 0.93647 1.21009 0.96975 0.94177 0.99531 1.21414 0.99485 1.00682 0.93102 1.21398 1.00039 0.95460 0.97704 1.21293 0.98360 0.95510 0.98976 1.21151 1.01206 1.00071 0.93102 1.22073 0.95917 1.00454 0.97358 1.21308 0.95130 0.99964 0.97470 0.92996 0.92383 0.91674 0.91345 0.91633 0.91741 0.94006 0.91590 0.90740 0.84023 0.92490 0.93217 0.99921 0.97975 0.92806 0.86314 0.84423 0.83833 0.84335 0.86905 0.94177 0.91554 0.91641 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.87 71.98 0.64 -1.76 16 2 C -0.09 -1.94 2.40 -11.19 -0.03 -1.96 16 3 H 0.05 1.27 6.97 -2.39 -0.02 1.26 16 4 C -0.11 -1.99 4.68 28.73 0.13 -1.85 16 5 C -0.11 -2.47 5.26 28.74 0.15 -2.31 16 6 C -0.11 -2.69 5.13 30.20 0.16 -2.53 16 7 C 0.10 2.95 2.02 44.44 0.09 3.04 16 8 H 0.02 0.64 5.84 -2.39 -0.01 0.63 16 9 N -0.68 -23.11 5.38 -475.76 -2.56 -25.67 16 10 C 0.14 4.92 2.24 44.17 0.10 5.02 16 11 H 0.03 1.12 7.26 -2.38 -0.02 1.11 16 12 C -0.09 -3.95 4.72 30.59 0.14 -3.80 16 13 C 0.03 1.72 4.80 29.85 0.14 1.87 16 14 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 15 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 16 C 0.00 0.28 5.46 84.66 0.46 0.74 16 17 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 18 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 C -0.07 -2.08 3.34 -19.87 -0.07 -2.15 16 23 C -0.10 -2.82 7.67 22.27 0.17 -2.65 16 24 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 25 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 26 C -0.12 -2.83 10.05 22.27 0.22 -2.60 16 27 C -0.14 -3.85 9.67 22.27 0.22 -3.64 16 28 C -0.12 -3.30 5.06 31.29 0.16 -3.14 16 29 C -0.10 -2.18 4.89 30.14 0.15 -2.03 16 30 H 0.05 0.90 8.09 -2.39 -0.02 0.88 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.07 1.17 7.47 -2.39 -0.02 1.15 16 34 H 0.07 1.10 7.97 -2.38 -0.02 1.08 16 35 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.04 1.04 7.46 -2.39 -0.02 1.02 16 37 H 0.07 1.59 6.98 -2.39 -0.02 1.57 16 38 H 0.07 2.06 4.23 -2.39 -0.01 2.05 16 39 H 0.34 13.11 6.03 -89.69 -0.54 12.57 16 40 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 41 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 42 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H 0.00 0.11 6.43 -2.39 -0.02 0.10 16 44 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.12 3.57 7.73 -2.91 -0.02 3.55 16 46 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 47 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 48 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 49 H 0.11 3.13 8.04 -2.91 -0.02 3.11 16 50 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.07 1.83 8.12 -2.39 -0.02 1.81 16 52 H 0.06 1.33 7.67 -2.39 -0.02 1.31 16 53 H 0.07 1.39 6.63 -2.39 -0.02 1.38 16 Total: -1.00 -62.67 395.15 3.59 -59.08 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.32 Total: 32.24 kcal Atomic # 6 Polarization: -59.58 SS G_CDS: 3.52 Total: -56.06 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -2.27 Total: -81.98 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -62.67 3.59 -59.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308785740.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.121 kcal (2) G-P(sol) polarization free energy of solvation -62.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds