Wall clock time and date at job start Tue Mar 31 2020 10:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.77955 * 2 1 4 4 C 1.54244 * 109.62575 * 239.52410 * 2 1 3 5 5 C 1.45547 * 112.40058 * 160.31050 * 4 2 1 6 6 C 1.54239 * 112.40808 * 61.93534 * 5 4 2 7 7 C 1.50469 * 108.51619 * 279.99999 * 6 5 4 8 8 H 1.09004 * 108.87526 * 333.48062 * 7 6 5 9 9 N 1.46903 * 108.87891 * 214.93772 * 7 6 5 10 10 C 1.46897 * 111.00069 * 83.55484 * 9 7 6 11 11 H 1.08994 * 109.47299 * 325.00303 * 10 9 7 12 12 C 1.52999 * 109.47150 * 204.99757 * 10 9 7 13 13 C 1.53006 * 109.46623 * 65.00461 * 12 10 9 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99834 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00496 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47325 * 59.99531 * 18 16 14 20 20 H 1.48496 * 109.47425 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47183 * 299.99726 * 18 16 14 22 22 C 1.50707 * 109.46776 * 85.00089 * 10 9 7 23 23 C 1.38240 * 119.99863 * 39.73026 * 22 10 9 24 24 C 1.38233 * 120.00068 * 179.76502 * 23 22 10 25 25 C 1.38233 * 119.99634 * 0.50236 * 24 23 22 26 26 C 1.38237 * 120.00363 * 359.75123 * 25 24 23 27 27 C 1.38233 * 119.99975 * 219.99765 * 22 10 9 28 28 C 1.54060 * 112.42110 * 94.20509 * 7 6 5 29 29 C 1.50472 * 109.62868 * 120.48584 * 2 1 3 30 30 H 1.09005 * 109.46872 * 180.47709 * 1 2 3 31 31 H 1.08998 * 109.47341 * 300.47664 * 1 2 3 32 32 H 1.09002 * 109.47330 * 60.47997 * 1 2 3 33 33 H 1.09000 * 108.90226 * 39.55612 * 4 2 1 34 34 H 1.08997 * 108.89541 * 281.06285 * 4 2 1 35 35 H 1.08991 * 108.89301 * 301.18100 * 5 4 2 36 36 H 1.09003 * 108.89233 * 182.69049 * 5 4 2 37 37 H 1.09005 * 109.62740 * 160.29269 * 6 5 4 38 38 H 1.09004 * 109.79246 * 39.80863 * 6 5 4 39 39 H 1.00903 * 110.99868 * 207.51529 * 9 7 6 40 40 H 1.09000 * 109.47486 * 305.00632 * 12 10 9 41 41 H 1.09001 * 109.47362 * 184.99910 * 12 10 9 42 42 H 1.08993 * 109.46955 * 300.00075 * 13 12 10 43 43 H 1.09000 * 109.47050 * 59.99904 * 13 12 10 44 44 H 0.96992 * 120.00032 * 180.02562 * 17 16 14 45 45 H 1.08003 * 119.99729 * 359.97438 * 23 22 10 46 46 H 1.07996 * 120.00406 * 180.22289 * 24 23 22 47 47 H 1.08005 * 119.99948 * 179.72014 * 25 24 23 48 48 H 1.07998 * 120.00582 * 179.97438 * 26 25 24 49 49 H 1.08001 * 119.99971 * 0.02562 * 27 22 10 50 50 H 1.09005 * 108.81568 * 79.09612 * 28 7 6 51 51 H 1.08995 * 108.81989 * 197.37170 * 28 7 6 52 52 H 1.09004 * 108.87602 * 334.63651 * 29 2 1 53 53 H 1.09001 * 108.87244 * 93.17821 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8988 1.0257 0.0000 4 6 2.0480 -0.7368 -1.2521 5 6 3.4277 -0.3952 -1.5656 6 6 4.4027 -0.7945 -0.4391 7 6 4.3396 0.2515 0.6406 8 1 4.0333 1.1987 0.1965 9 7 5.6775 0.4121 1.2257 10 6 6.4974 1.3277 0.4211 11 1 6.2539 1.2017 -0.6338 12 6 7.9785 1.0150 0.6436 13 6 8.2903 -0.3840 0.1083 14 6 9.7493 -0.6918 0.3269 15 1 10.3901 0.0377 0.7998 16 6 10.2663 -1.9042 -0.0779 17 7 9.4860 -2.7923 -0.6543 18 14 12.0745 -2.2860 0.1936 19 1 12.3790 -2.2331 1.6461 20 1 12.3772 -3.6438 -0.3259 21 1 12.9049 -1.2848 -0.5229 22 6 6.2164 2.7492 0.8352 23 6 6.0400 3.0579 2.1711 24 6 5.7871 4.3626 2.5515 25 6 5.7002 5.3568 1.5950 26 6 5.8713 5.0473 0.2587 27 6 6.1295 3.7434 -0.1212 28 6 3.3473 -0.1182 1.7596 29 6 2.0354 -0.7190 1.2213 30 1 -0.3633 -1.0277 0.0086 31 1 -0.3634 0.5212 0.8856 32 1 -0.3634 0.5064 -0.8943 33 1 1.4178 -0.4750 -2.1020 34 1 1.9802 -1.8114 -1.0826 35 1 3.4969 0.6803 -1.7275 36 1 3.7186 -0.9079 -2.4825 37 1 5.4166 -0.8510 -0.8354 38 1 4.1158 -1.7626 -0.0285 39 1 5.6183 0.7260 2.1828 40 1 8.2021 1.0543 1.7097 41 1 8.5880 1.7495 0.1172 42 1 7.6808 -1.1185 0.6346 43 1 8.0668 -0.4233 -0.9578 44 1 9.8496 -3.6453 -0.9387 45 1 6.1032 2.2803 2.9180 46 1 5.6529 4.6044 3.5954 47 1 5.4981 6.3754 1.8917 48 1 5.8031 5.8239 -0.4887 49 1 6.2626 3.5014 -1.1653 50 1 3.8200 -0.8419 2.4238 51 1 3.1121 0.7792 2.3317 52 1 1.2761 -0.6656 2.0015 53 1 2.2077 -1.7652 0.9685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308785743.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:47 Heat of formation + Delta-G solvation = -10.265268 kcal Electronic energy + Delta-G solvation = -27413.466796 eV Core-core repulsion = 24055.079609 eV Total energy + Delta-G solvation = -3358.387188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.86854 -38.88513 -36.28564 -33.65524 -32.71845 -32.38136 -30.84434 -30.22973 -29.62223 -27.08991 -26.00194 -24.00393 -23.26631 -22.91596 -22.24187 -20.90200 -20.33690 -19.58447 -18.88400 -17.03913 -16.07978 -15.77621 -15.34015 -14.96447 -14.89046 -14.46953 -14.38646 -14.26689 -13.95783 -13.49792 -13.31081 -13.24074 -13.08089 -12.75069 -12.72662 -12.31783 -12.22177 -11.94555 -11.90607 -11.53868 -11.45118 -11.13486 -10.94349 -10.87304 -10.72069 -10.57469 -10.51076 -10.47115 -10.35368 -10.19404 -10.10403 -10.02130 -9.60205 -9.31960 -8.95586 -8.82905 -8.42707 -8.21515 -7.90260 -5.86526 -3.87404 1.47952 1.49555 3.40051 3.44189 3.46938 3.89808 4.43413 4.56105 4.60944 4.74121 4.92187 4.94568 4.98917 5.06993 5.16323 5.22511 5.24590 5.29782 5.45770 5.48752 5.49041 5.58137 5.60850 5.61984 5.67554 5.73456 5.77047 5.79629 5.86451 6.00819 6.06785 6.12626 6.13585 6.18036 6.21439 6.26576 6.28672 6.31500 6.40338 6.50106 6.55077 6.57331 6.63491 6.64903 6.75731 6.82694 6.93398 7.10526 7.31308 7.57714 7.84803 7.87386 8.09167 8.24897 8.59521 9.20931 9.74986 11.24352 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.004371 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.902013 B = 6404.404368 C = 8649.924692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.109 4.109 7 C 0.095 3.905 8 H 0.036 0.964 9 N -0.665 5.665 10 C 0.126 3.874 11 H 0.082 0.918 12 C -0.091 4.091 13 C 0.033 3.967 14 C -0.519 4.519 15 H 0.050 0.950 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.886 3.114 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.279 1.279 22 C -0.094 4.094 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.134 4.134 26 C -0.120 4.120 27 C -0.116 4.116 28 C -0.119 4.119 29 C -0.108 4.108 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.333 0.667 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.035 0.965 43 H 0.007 0.993 44 H 0.258 0.742 45 H 0.121 0.879 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.120 0.880 50 H 0.070 0.930 51 H 0.051 0.949 52 H 0.056 0.944 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.517 10.835 2.601 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.147 4.147 7 C -0.014 4.014 8 H 0.054 0.946 9 N -0.296 5.296 10 C 0.016 3.984 11 H 0.100 0.900 12 C -0.129 4.129 13 C -0.004 4.004 14 C -0.557 4.557 15 H 0.068 0.932 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.714 3.286 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.205 1.205 22 C -0.096 4.096 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.152 4.152 26 C -0.138 4.138 27 C -0.135 4.135 28 C -0.157 4.157 29 C -0.146 4.146 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.153 0.847 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.026 0.974 44 H 0.068 0.932 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.138 0.862 50 H 0.088 0.912 51 H 0.070 0.930 52 H 0.075 0.925 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.262 10.058 2.237 20.103 hybrid contribution 0.708 0.711 0.376 1.071 sum -16.554 10.768 2.613 19.920 Atomic orbital electron populations 1.21882 0.95557 1.01512 1.01245 1.20918 0.94842 1.00005 0.95197 0.91210 1.20550 0.96688 1.00321 0.97148 1.20482 0.95069 1.01092 0.99141 1.21422 1.00307 0.98488 0.94522 1.21315 0.87889 0.97506 0.94698 0.94607 1.60876 1.12599 1.51001 1.05131 1.20891 0.96237 0.83727 0.97580 0.90038 1.21632 0.89915 1.00881 1.00495 1.18989 0.95621 0.90185 0.95645 1.21294 0.95296 1.00510 1.38610 0.93220 1.24969 0.97292 0.96474 0.95531 1.69964 1.35031 1.07216 1.41148 0.86762 0.86128 0.77253 0.78429 1.20399 1.21412 1.20450 1.21042 0.96934 0.98103 0.93530 1.20964 1.00521 0.96498 0.95777 1.21072 1.00287 0.93132 0.99145 1.21055 1.01847 0.98953 0.93320 1.21110 1.00210 0.96419 0.96034 1.21101 1.00141 0.92762 0.99453 1.22054 0.95044 1.00685 0.97925 1.21331 0.96160 1.00164 0.96987 0.92813 0.92986 0.92985 0.92831 0.92217 0.92754 0.92237 0.89857 0.91645 0.84698 0.93363 0.93530 0.94710 0.97450 0.93221 0.86159 0.86484 0.86640 0.86500 0.86197 0.91160 0.93030 0.92485 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.87 37.16 0.33 -0.92 16 2 C -0.09 -0.93 2.40 -91.23 -0.22 -1.15 16 3 H 0.07 0.77 6.98 -51.93 -0.36 0.41 16 4 C -0.11 -1.18 4.69 -29.59 -0.14 -1.32 16 5 C -0.12 -1.50 5.26 -29.60 -0.16 -1.65 16 6 C -0.11 -1.63 5.04 -27.35 -0.14 -1.76 16 7 C 0.10 1.32 1.86 -68.42 -0.13 1.19 16 8 H 0.04 0.51 6.07 -51.93 -0.32 0.20 16 9 N -0.67 -10.59 5.38 -101.70 -0.55 -11.13 16 10 C 0.13 2.12 1.84 -68.86 -0.13 1.99 16 11 H 0.08 1.44 7.13 -51.93 -0.37 1.07 16 12 C -0.09 -1.90 4.81 -26.73 -0.13 -2.03 16 13 C 0.03 0.85 4.86 -27.88 -0.14 0.71 16 14 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 15 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 18 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.09 -1.40 4.59 -104.62 -0.48 -1.88 16 23 C -0.12 -1.62 9.12 -39.58 -0.36 -1.98 16 24 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 25 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 26 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 27 C -0.12 -1.60 9.67 -39.58 -0.38 -1.99 16 28 C -0.12 -1.42 5.07 -25.66 -0.13 -1.55 16 29 C -0.11 -1.14 4.89 -27.47 -0.13 -1.28 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.05 0.42 8.13 -51.93 -0.42 0.00 16 33 H 0.05 0.53 7.97 -51.93 -0.41 0.12 16 34 H 0.06 0.65 7.47 -51.93 -0.39 0.26 16 35 H 0.05 0.68 7.47 -51.93 -0.39 0.29 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.52 7.32 -51.93 -0.38 1.14 16 38 H 0.06 0.99 6.99 -51.93 -0.36 0.63 16 39 H 0.33 4.90 5.92 -39.29 -0.23 4.67 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 43 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.12 1.55 6.50 -52.48 -0.34 1.21 16 46 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 47 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 48 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 49 H 0.12 1.56 8.04 -52.49 -0.42 1.14 16 50 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 51 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.06 0.54 7.68 -51.93 -0.40 0.15 16 53 H 0.06 0.70 6.63 -51.93 -0.34 0.36 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -30.20 400.55 -12.46 -42.66 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -9.73 Total: 4.71 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: -3.93 Total: -32.91 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.19 Total: -37.60 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.20 -12.46 -42.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308785743.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.394 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds