Wall clock time and date at job start Tue Mar 31 2020 10:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.77955 * 2 1 4 4 C 1.54244 * 109.62575 * 239.52410 * 2 1 3 5 5 C 1.45547 * 112.40058 * 160.31050 * 4 2 1 6 6 C 1.54239 * 112.40808 * 61.93534 * 5 4 2 7 7 C 1.50469 * 108.51619 * 279.99999 * 6 5 4 8 8 H 1.09004 * 108.87526 * 333.48062 * 7 6 5 9 9 N 1.46903 * 108.87891 * 214.93772 * 7 6 5 10 10 C 1.46897 * 111.00069 * 83.55484 * 9 7 6 11 11 H 1.08994 * 109.47299 * 325.00303 * 10 9 7 12 12 C 1.52999 * 109.47150 * 204.99757 * 10 9 7 13 13 C 1.53006 * 109.46623 * 65.00461 * 12 10 9 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99834 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00496 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47325 * 59.99531 * 18 16 14 20 20 H 1.48496 * 109.47425 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47183 * 299.99726 * 18 16 14 22 22 C 1.50707 * 109.46776 * 85.00089 * 10 9 7 23 23 C 1.38240 * 119.99863 * 39.73026 * 22 10 9 24 24 C 1.38233 * 120.00068 * 179.76502 * 23 22 10 25 25 C 1.38233 * 119.99634 * 0.50236 * 24 23 22 26 26 C 1.38237 * 120.00363 * 359.75123 * 25 24 23 27 27 C 1.38233 * 119.99975 * 219.99765 * 22 10 9 28 28 C 1.54060 * 112.42110 * 94.20509 * 7 6 5 29 29 C 1.50472 * 109.62868 * 120.48584 * 2 1 3 30 30 H 1.09005 * 109.46872 * 180.47709 * 1 2 3 31 31 H 1.08998 * 109.47341 * 300.47664 * 1 2 3 32 32 H 1.09002 * 109.47330 * 60.47997 * 1 2 3 33 33 H 1.09000 * 108.90226 * 39.55612 * 4 2 1 34 34 H 1.08997 * 108.89541 * 281.06285 * 4 2 1 35 35 H 1.08991 * 108.89301 * 301.18100 * 5 4 2 36 36 H 1.09003 * 108.89233 * 182.69049 * 5 4 2 37 37 H 1.09005 * 109.62740 * 160.29269 * 6 5 4 38 38 H 1.09004 * 109.79246 * 39.80863 * 6 5 4 39 39 H 1.00903 * 110.99868 * 207.51529 * 9 7 6 40 40 H 1.09000 * 109.47486 * 305.00632 * 12 10 9 41 41 H 1.09001 * 109.47362 * 184.99910 * 12 10 9 42 42 H 1.08993 * 109.46955 * 300.00075 * 13 12 10 43 43 H 1.09000 * 109.47050 * 59.99904 * 13 12 10 44 44 H 0.96992 * 120.00032 * 180.02562 * 17 16 14 45 45 H 1.08003 * 119.99729 * 359.97438 * 23 22 10 46 46 H 1.07996 * 120.00406 * 180.22289 * 24 23 22 47 47 H 1.08005 * 119.99948 * 179.72014 * 25 24 23 48 48 H 1.07998 * 120.00582 * 179.97438 * 26 25 24 49 49 H 1.08001 * 119.99971 * 0.02562 * 27 22 10 50 50 H 1.09005 * 108.81568 * 79.09612 * 28 7 6 51 51 H 1.08995 * 108.81989 * 197.37170 * 28 7 6 52 52 H 1.09004 * 108.87602 * 334.63651 * 29 2 1 53 53 H 1.09001 * 108.87244 * 93.17821 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8988 1.0257 0.0000 4 6 2.0480 -0.7368 -1.2521 5 6 3.4277 -0.3952 -1.5656 6 6 4.4027 -0.7945 -0.4391 7 6 4.3396 0.2515 0.6406 8 1 4.0333 1.1987 0.1965 9 7 5.6775 0.4121 1.2257 10 6 6.4974 1.3277 0.4211 11 1 6.2539 1.2017 -0.6338 12 6 7.9785 1.0150 0.6436 13 6 8.2903 -0.3840 0.1083 14 6 9.7493 -0.6918 0.3269 15 1 10.3901 0.0377 0.7998 16 6 10.2663 -1.9042 -0.0779 17 7 9.4860 -2.7923 -0.6543 18 14 12.0745 -2.2860 0.1936 19 1 12.3790 -2.2331 1.6461 20 1 12.3772 -3.6438 -0.3259 21 1 12.9049 -1.2848 -0.5229 22 6 6.2164 2.7492 0.8352 23 6 6.0400 3.0579 2.1711 24 6 5.7871 4.3626 2.5515 25 6 5.7002 5.3568 1.5950 26 6 5.8713 5.0473 0.2587 27 6 6.1295 3.7434 -0.1212 28 6 3.3473 -0.1182 1.7596 29 6 2.0354 -0.7190 1.2213 30 1 -0.3633 -1.0277 0.0086 31 1 -0.3634 0.5212 0.8856 32 1 -0.3634 0.5064 -0.8943 33 1 1.4178 -0.4750 -2.1020 34 1 1.9802 -1.8114 -1.0826 35 1 3.4969 0.6803 -1.7275 36 1 3.7186 -0.9079 -2.4825 37 1 5.4166 -0.8510 -0.8354 38 1 4.1158 -1.7626 -0.0285 39 1 5.6183 0.7260 2.1828 40 1 8.2021 1.0543 1.7097 41 1 8.5880 1.7495 0.1172 42 1 7.6808 -1.1185 0.6346 43 1 8.0668 -0.4233 -0.9578 44 1 9.8496 -3.6453 -0.9387 45 1 6.1032 2.2803 2.9180 46 1 5.6529 4.6044 3.5954 47 1 5.4981 6.3754 1.8917 48 1 5.8031 5.8239 -0.4887 49 1 6.2626 3.5014 -1.1653 50 1 3.8200 -0.8419 2.4238 51 1 3.1121 0.7792 2.3317 52 1 1.2761 -0.6656 2.0015 53 1 2.2077 -1.7652 0.9685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308785743.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:46 Heat of formation + Delta-G solvation = -23.965468 kcal Electronic energy + Delta-G solvation = -27414.060882 eV Core-core repulsion = 24055.079609 eV Total energy + Delta-G solvation = -3358.981273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.98812 -39.87131 -37.50533 -35.44523 -34.10019 -33.57773 -31.92324 -31.80894 -30.69389 -28.25347 -27.59477 -25.38896 -24.55533 -23.89876 -23.25979 -22.50862 -21.34582 -21.03597 -19.93939 -18.48685 -17.90861 -16.95530 -16.54976 -16.34827 -16.01275 -15.85564 -15.40487 -15.29859 -15.13435 -14.89297 -14.60541 -14.24370 -14.19802 -14.03724 -13.80071 -13.64973 -13.46063 -13.32472 -13.25924 -12.90575 -12.78450 -12.51525 -12.43682 -12.25632 -12.11288 -11.90705 -11.70082 -11.63682 -11.51628 -11.37403 -11.31674 -11.23114 -11.12926 -11.03176 -11.00088 -10.47804 -9.81573 -9.57909 -9.19328 -8.12894 -6.23396 0.46343 0.50939 1.39246 1.42500 1.50195 2.43743 2.89219 3.18955 3.22812 3.66298 3.77321 3.84310 3.96240 4.06600 4.15501 4.18204 4.26429 4.29514 4.29576 4.37170 4.44910 4.51021 4.59315 4.61254 4.66317 4.69286 4.75776 4.81152 4.88625 4.95658 5.02529 5.06562 5.10637 5.13597 5.16313 5.18241 5.19082 5.23767 5.32510 5.37573 5.39573 5.47149 5.50393 5.56932 5.57617 5.60686 5.62202 5.62521 5.69889 5.88116 6.02782 6.13713 6.31221 6.34975 6.64412 6.95168 7.44285 8.97912 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.004371 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.902013 B = 6404.404368 C = 8649.924692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.112 4.112 6 C -0.106 4.106 7 C 0.104 3.896 8 H 0.036 0.964 9 N -0.682 5.682 10 C 0.142 3.858 11 H 0.064 0.936 12 C -0.078 4.078 13 C 0.047 3.953 14 C -0.545 4.545 15 H 0.052 0.948 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.959 3.041 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.269 1.269 22 C -0.111 4.111 23 C -0.129 4.129 24 C -0.119 4.119 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.132 4.132 28 C -0.113 4.113 29 C -0.106 4.106 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.038 0.962 38 H 0.058 0.942 39 H 0.340 0.660 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.008 0.992 43 H -0.024 1.024 44 H 0.261 0.739 45 H 0.122 0.878 46 H 0.143 0.857 47 H 0.147 0.853 48 H 0.142 0.858 49 H 0.117 0.883 50 H 0.060 0.940 51 H 0.064 0.936 52 H 0.074 0.926 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.535 12.880 3.831 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.149 4.149 6 C -0.144 4.144 7 C -0.005 4.005 8 H 0.054 0.946 9 N -0.314 5.314 10 C 0.031 3.969 11 H 0.082 0.918 12 C -0.116 4.116 13 C 0.009 3.991 14 C -0.583 4.583 15 H 0.070 0.930 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.783 3.217 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.194 1.194 22 C -0.113 4.113 23 C -0.147 4.147 24 C -0.137 4.137 25 C -0.147 4.147 26 C -0.138 4.138 27 C -0.151 4.151 28 C -0.151 4.151 29 C -0.144 4.144 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.161 0.839 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.026 0.974 43 H -0.005 1.005 44 H 0.070 0.930 45 H 0.140 0.860 46 H 0.161 0.839 47 H 0.165 0.835 48 H 0.159 0.841 49 H 0.135 0.865 50 H 0.079 0.921 51 H 0.082 0.918 52 H 0.093 0.907 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.287 12.117 3.473 22.211 hybrid contribution 1.030 0.094 -0.022 1.034 sum -17.258 12.211 3.451 21.421 Atomic orbital electron populations 1.21844 0.93865 1.02069 1.02008 1.20881 0.96187 0.99219 0.94328 0.91909 1.20527 0.95349 1.00405 0.98297 1.20412 0.95779 1.00941 0.97815 1.21343 0.98438 0.98833 0.95776 1.21246 0.87381 0.96897 0.94976 0.94633 1.60782 1.13836 1.51194 1.05584 1.20428 0.93676 0.85934 0.96824 0.91826 1.21387 0.93108 0.97430 0.99646 1.18753 0.94204 0.92653 0.93442 1.21743 0.96636 1.01017 1.38886 0.92954 1.25899 1.02425 0.96202 0.94971 1.70113 1.37330 1.07661 1.41882 0.85607 0.79927 0.77310 0.78824 1.19325 1.20753 1.19378 1.20759 0.99360 0.96561 0.94648 1.21073 1.00903 0.97682 0.95078 1.21401 0.99191 0.92299 1.00763 1.21473 1.00060 1.00345 0.92795 1.21413 0.99208 0.95983 0.97237 1.21228 1.00878 0.93660 0.99287 1.22004 0.95104 1.01067 0.96933 1.21327 0.95670 0.99572 0.97782 0.92356 0.92142 0.92361 0.91346 0.92325 0.92710 0.92830 0.94303 0.92359 0.83925 0.93547 0.94049 0.97390 1.00540 0.93032 0.86040 0.83885 0.83516 0.84064 0.86455 0.92103 0.91753 0.90726 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.87 71.98 0.64 -1.44 16 2 C -0.09 -1.66 2.40 -11.19 -0.03 -1.68 16 3 H 0.06 1.30 6.98 -2.39 -0.02 1.28 16 4 C -0.11 -2.27 4.69 28.74 0.13 -2.14 16 5 C -0.11 -2.91 5.26 28.74 0.15 -2.76 16 6 C -0.11 -3.40 5.04 30.20 0.15 -3.25 16 7 C 0.10 3.01 1.86 44.45 0.08 3.09 16 8 H 0.04 1.04 6.07 -2.39 -0.01 1.02 16 9 N -0.68 -23.01 5.38 -475.67 -2.56 -25.57 16 10 C 0.14 5.08 1.84 44.17 0.08 5.16 16 11 H 0.06 2.46 7.13 -2.39 -0.02 2.45 16 12 C -0.08 -3.42 4.81 30.60 0.15 -3.27 16 13 C 0.05 2.58 4.86 29.85 0.15 2.73 16 14 C -0.54 -32.54 9.11 25.60 0.23 -32.31 16 15 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 16 C 0.00 0.16 5.46 84.65 0.46 0.62 16 17 N -0.93 -58.57 13.29 21.45 0.28 -58.28 16 18 Si 0.96 45.95 29.54 68.60 2.03 47.98 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 C -0.11 -3.34 4.59 -19.86 -0.09 -3.43 16 23 C -0.13 -3.39 9.12 22.27 0.20 -3.19 16 24 C -0.12 -2.54 10.05 22.27 0.22 -2.31 16 25 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 26 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 27 C -0.13 -3.61 9.67 22.27 0.22 -3.39 16 28 C -0.11 -2.67 5.07 31.29 0.16 -2.51 16 29 C -0.11 -2.11 4.89 30.11 0.15 -1.97 16 30 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.06 0.81 8.11 -2.39 -0.02 0.79 16 32 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 33 H 0.07 1.25 7.97 -2.39 -0.02 1.24 16 34 H 0.06 1.25 7.47 -2.39 -0.02 1.23 16 35 H 0.05 1.41 7.47 -2.39 -0.02 1.39 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.58 7.32 -2.38 -0.02 1.56 16 38 H 0.06 1.91 6.99 -2.38 -0.02 1.89 16 39 H 0.34 10.35 5.92 -89.69 -0.53 9.82 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.01 0.46 7.75 -2.39 -0.02 0.44 16 43 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 44 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.12 3.07 6.50 -2.91 -0.02 3.05 16 46 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 47 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 48 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 49 H 0.12 3.14 8.04 -2.91 -0.02 3.12 16 50 H 0.06 1.55 8.12 -2.38 -0.02 1.53 16 51 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.07 1.26 7.68 -2.38 -0.02 1.24 16 53 H 0.06 1.21 6.63 -2.39 -0.02 1.20 16 Total: -1.00 -67.81 400.55 3.58 -64.24 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.32 Total: 28.44 kcal Atomic # 6 Polarization: -60.31 SS G_CDS: 3.51 Total: -56.81 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -2.27 Total: -83.85 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -67.81 3.58 -64.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308785743.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.270 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds