Wall clock time and date at job start Tue Mar 31 2020 10:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47260 * 2 1 4 4 C 1.53001 * 109.46902 * 119.99960 * 2 1 3 5 5 C 1.50704 * 109.47057 * 175.00404 * 4 2 1 6 6 C 1.38235 * 120.00040 * 89.99947 * 5 4 2 7 7 C 1.38238 * 119.99629 * 180.02562 * 6 5 4 8 8 C 1.38231 * 120.00066 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99921 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47208 * 340.00042 * 9 8 7 11 11 N 1.46906 * 109.47041 * 220.00304 * 9 8 7 12 12 C 1.46898 * 110.99961 * 155.00053 * 11 9 8 13 13 H 1.09001 * 109.47520 * 35.00051 * 12 11 9 14 14 C 1.53006 * 109.47006 * 275.00030 * 12 11 9 15 15 C 1.52997 * 109.47123 * 155.00049 * 12 11 9 16 16 C 1.50697 * 109.47173 * 294.99403 * 15 12 11 17 17 H 1.08007 * 119.99916 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00355 * 179.97438 * 16 15 12 19 19 N 1.31509 * 119.99821 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00224 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46807 * 60.00145 * 20 18 16 22 22 H 1.48497 * 109.47048 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47150 * 300.00292 * 20 18 16 24 24 C 1.52994 * 109.47264 * 100.00209 * 9 8 7 25 25 C 1.53003 * 117.49966 * 8.62255 * 24 9 8 26 26 C 1.53001 * 117.50225 * 299.99924 * 24 9 8 27 27 C 1.38233 * 119.99956 * 0.26042 * 8 7 6 28 28 C 1.38231 * 119.99656 * 270.01644 * 5 4 2 29 29 H 1.08991 * 109.47289 * 300.00389 * 1 2 3 30 30 H 1.09001 * 109.47010 * 60.00505 * 1 2 3 31 31 H 1.09007 * 109.46840 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47594 * 239.99649 * 2 1 3 33 33 H 1.08999 * 109.47103 * 59.99348 * 3 2 1 34 34 H 1.08992 * 109.47477 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46697 * 299.99687 * 3 2 1 36 36 H 1.08995 * 109.47534 * 54.99716 * 4 2 1 37 37 H 1.09000 * 109.47156 * 294.99933 * 4 2 1 38 38 H 1.08000 * 120.00269 * 359.97438 * 6 5 4 39 39 H 1.08003 * 119.99674 * 179.97438 * 7 6 5 40 40 H 1.00893 * 110.99825 * 31.04381 * 11 9 8 41 41 H 1.09001 * 109.47002 * 299.99782 * 14 12 11 42 42 H 1.08993 * 109.46955 * 60.00219 * 14 12 11 43 43 H 1.09000 * 109.47050 * 180.02562 * 14 12 11 44 44 H 1.09002 * 109.47223 * 54.99964 * 15 12 11 45 45 H 1.09006 * 109.47396 * 175.00174 * 15 12 11 46 46 H 0.97002 * 120.00259 * 179.97438 * 19 18 16 47 47 H 1.09003 * 115.55017 * 154.32944 * 24 9 8 48 48 H 1.09000 * 117.49732 * 359.97438 * 25 24 9 49 49 H 1.08998 * 117.49702 * 145.02276 * 25 24 9 50 50 H 1.09002 * 117.50027 * 214.98341 * 26 24 9 51 51 H 1.09004 * 117.49384 * 359.97438 * 26 24 9 52 52 H 1.08007 * 119.99643 * 179.72694 * 27 8 7 53 53 H 1.07998 * 120.00458 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.8293 1.1890 6 6 4.3291 0.1713 1.7275 7 6 5.7068 0.0723 1.6717 8 6 6.2972 -1.0274 1.0779 9 6 7.7991 -1.1350 1.0166 10 1 8.2399 -0.1469 1.1487 11 7 8.1982 -1.6786 -0.2885 12 6 9.5654 -1.2675 -0.6343 13 1 10.1714 -1.2233 0.2707 14 6 9.5316 0.1130 -1.2932 15 6 10.1727 -2.2815 -1.6057 16 6 10.3195 -3.6130 -0.9153 17 1 10.0101 -3.7248 0.1135 18 6 10.8477 -4.6887 -1.5971 19 7 11.2239 -4.5527 -2.8498 20 14 11.0290 -6.3392 -0.7414 21 1 9.6944 -6.8160 -0.2977 22 1 11.6174 -7.3238 -1.6846 23 1 11.9186 -6.1902 0.4382 24 6 8.2896 -2.0650 2.1280 25 6 7.2333 -2.8403 2.9180 26 6 7.9713 -1.6701 3.5715 27 6 5.5100 -2.0257 0.5351 28 6 4.1324 -1.9289 0.5949 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6053 -1.7197 1.2953 37 1 1.7516 -0.1583 2.1370 38 1 3.8677 1.0308 2.1911 39 1 6.3218 0.8543 2.0921 40 1 7.5458 -1.4064 -1.0084 41 1 8.9256 0.0689 -2.1982 42 1 9.0990 0.8354 -0.6012 43 1 10.5460 0.4179 -1.5502 44 1 9.5197 -2.3913 -2.4716 45 1 11.1522 -1.9313 -1.9313 46 1 11.5959 -5.3093 -3.3295 47 1 9.2422 -2.5604 1.9402 48 1 6.1889 -2.6874 2.6461 49 1 7.4908 -3.8461 3.2500 50 1 8.7143 -1.9061 4.3333 51 1 7.4127 -0.7475 3.7293 52 1 5.9714 -2.8828 0.0672 53 1 3.5174 -2.7104 0.1735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473312149.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:38 Heat of formation + Delta-G solvation = 21.013691 kcal Electronic energy + Delta-G solvation = -26907.571461 eV Core-core repulsion = 23550.540631 eV Total energy + Delta-G solvation = -3357.030830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.07389 -37.98450 -36.03486 -35.67713 -32.77347 -31.78757 -30.87470 -29.72627 -27.38818 -27.23262 -26.69862 -24.53674 -23.00068 -22.71041 -21.78165 -21.60606 -20.16654 -19.75546 -19.01836 -16.45841 -16.08342 -15.74664 -15.58581 -15.21534 -14.83373 -14.45982 -14.38489 -14.17255 -13.96187 -13.60976 -13.27821 -13.20582 -12.82189 -12.52238 -12.42883 -12.33020 -12.17617 -11.95905 -11.76243 -11.68534 -11.47153 -11.24232 -11.11681 -11.01263 -10.98135 -10.89292 -10.75926 -10.64947 -10.51087 -10.37207 -10.02567 -9.92270 -9.59177 -9.22471 -8.94148 -8.75126 -8.35840 -8.20632 -7.53788 -5.83454 -3.80507 1.42685 1.53902 3.43122 3.47000 3.50413 3.83778 4.12005 4.58973 4.60105 4.64245 4.75785 4.76775 4.90504 4.98539 5.11336 5.19059 5.24890 5.30087 5.36286 5.40370 5.45966 5.49243 5.55294 5.60062 5.62574 5.68083 5.68778 5.76995 5.84473 5.87615 5.89153 5.91404 5.98844 6.02053 6.07899 6.08787 6.10954 6.16883 6.23179 6.24543 6.42791 6.48354 6.52962 6.67033 6.71206 6.73723 6.82333 7.08338 7.14637 7.61579 7.74665 8.07018 8.10864 8.22569 8.65169 9.24626 9.80383 11.28769 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.003174 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.569986 B = 8819.310701 C = 8936.959475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.074 4.074 5 C -0.086 4.086 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.079 4.079 9 C 0.156 3.844 10 H 0.046 0.954 11 N -0.653 5.653 12 C 0.089 3.911 13 H 0.065 0.935 14 C -0.180 4.180 15 C 0.034 3.966 16 C -0.484 4.484 17 H 0.059 0.941 18 C 0.050 3.950 19 N -0.905 5.905 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.280 1.280 24 C -0.122 4.122 25 C -0.178 4.178 26 C -0.190 4.190 27 C -0.090 4.090 28 C -0.122 4.122 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.334 0.666 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.056 0.944 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.257 0.743 47 H 0.116 0.884 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.137 0.863 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.106 11.424 9.427 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.112 4.112 5 C -0.086 4.086 6 C -0.138 4.138 7 C -0.135 4.135 8 C -0.079 4.079 9 C 0.047 3.953 10 H 0.064 0.936 11 N -0.283 5.283 12 C -0.020 4.020 13 H 0.084 0.916 14 C -0.239 4.239 15 C -0.003 4.003 16 C -0.523 4.523 17 H 0.077 0.923 18 C -0.149 4.149 19 N -0.546 5.546 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.141 4.141 25 C -0.215 4.215 26 C -0.228 4.228 27 C -0.108 4.108 28 C -0.140 4.140 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.153 0.847 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.066 0.934 47 H 0.134 0.866 48 H 0.115 0.885 49 H 0.105 0.895 50 H 0.106 0.894 51 H 0.105 0.895 52 H 0.155 0.845 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.827 10.711 9.527 22.876 hybrid contribution 0.045 -0.059 0.181 0.195 sum -17.782 10.653 9.708 22.889 Atomic orbital electron populations 1.21853 0.95284 1.01663 1.01660 1.21082 0.95218 0.96563 0.98151 1.21913 1.01868 0.95675 1.01264 1.20651 0.91445 1.00962 0.98104 1.19774 0.95169 0.94795 0.98871 1.20877 0.93368 0.98540 1.01047 1.20988 0.94641 0.97776 1.00094 1.19972 0.95561 0.94307 0.98098 1.19920 0.89002 0.95106 0.91321 0.93646 1.60575 1.03624 1.62566 1.01567 1.21834 0.88736 0.92225 0.99197 0.91648 1.22560 1.01748 0.99205 1.00389 1.19094 0.94814 0.92815 0.93581 1.21111 1.38412 0.94452 0.98330 0.92314 1.24993 0.96378 0.98678 0.94890 1.69952 1.44123 1.30941 1.09610 0.86736 0.78188 0.84308 0.79159 1.20385 1.21734 1.20632 1.22297 1.00564 1.01376 0.89872 1.23049 0.98169 0.95868 1.04391 1.22920 1.03943 0.99520 0.96368 1.21205 0.92899 0.98960 0.97779 1.21046 0.94906 0.97818 1.00233 0.92795 0.92721 0.92716 0.91011 0.92978 0.91951 0.93014 0.91214 0.91365 0.86717 0.86694 0.84742 0.93093 0.94494 0.92511 0.96569 0.96575 0.93365 0.86571 0.88517 0.89544 0.89413 0.89538 0.84533 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 37.16 0.34 -0.68 16 2 C -0.09 -0.75 2.91 -90.62 -0.26 -1.02 16 3 C -0.15 -1.24 8.76 37.16 0.33 -0.91 16 4 C -0.07 -0.64 4.84 -27.88 -0.13 -0.78 16 5 C -0.09 -0.93 4.71 -104.62 -0.49 -1.42 16 6 C -0.12 -1.31 7.96 -39.58 -0.32 -1.63 16 7 C -0.12 -1.41 9.21 -39.58 -0.36 -1.78 16 8 C -0.08 -1.08 3.15 -104.63 -0.33 -1.41 16 9 C 0.16 2.41 2.42 -68.87 -0.17 2.25 16 10 H 0.05 0.70 6.98 -51.93 -0.36 0.34 16 11 N -0.65 -11.83 5.15 -100.95 -0.52 -12.35 16 12 C 0.09 1.77 2.34 -67.71 -0.16 1.61 16 13 H 0.07 1.33 7.48 -51.93 -0.39 0.95 16 14 C -0.18 -3.03 9.15 37.16 0.34 -2.69 16 15 C 0.03 0.87 4.65 -27.89 -0.13 0.74 16 16 C -0.48 -13.47 8.84 -34.44 -0.30 -13.77 16 17 H 0.06 1.61 7.36 -52.48 -0.39 1.23 16 18 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 19 N -0.91 -27.50 13.29 55.43 0.74 -26.76 16 20 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 C -0.12 -1.95 5.72 -90.62 -0.52 -2.47 16 25 C -0.18 -2.61 9.50 -26.73 -0.25 -2.86 16 26 C -0.19 -2.55 10.02 -26.73 -0.27 -2.82 16 27 C -0.09 -1.25 7.26 -39.58 -0.29 -1.54 16 28 C -0.12 -1.47 9.70 -39.59 -0.38 -1.86 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.59 6.26 -51.93 -0.33 0.26 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 37 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.11 1.05 8.04 -52.49 -0.42 0.63 16 39 H 0.12 1.27 8.04 -52.48 -0.42 0.84 16 40 H 0.33 5.87 7.72 -39.30 -0.30 5.56 16 41 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 42 H 0.04 0.55 7.43 -51.93 -0.39 0.16 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.12 2.17 7.56 -51.93 -0.39 1.77 16 48 H 0.10 1.41 5.42 -51.93 -0.28 1.13 16 49 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 50 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.09 1.08 7.68 -51.93 -0.40 0.68 16 52 H 0.14 2.13 7.71 -52.48 -0.40 1.72 16 53 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 413.00 15.07 6.22 6.22 Total: -1.00 -29.29 413.00 -11.99 -41.28 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -9.94 Total: 6.15 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -3.46 Total: -31.71 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.22 Total: -39.11 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -29.29 -11.99 -41.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473312149.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.290 kcal (2) G-P(sol) polarization free energy of solvation -29.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds