Wall clock time and date at job start Tue Mar 31 2020 10:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47260 * 2 1 4 4 C 1.53001 * 109.46902 * 119.99960 * 2 1 3 5 5 C 1.50704 * 109.47057 * 175.00404 * 4 2 1 6 6 C 1.38235 * 120.00040 * 89.99947 * 5 4 2 7 7 C 1.38238 * 119.99629 * 180.02562 * 6 5 4 8 8 C 1.38231 * 120.00066 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99921 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47208 * 340.00042 * 9 8 7 11 11 N 1.46906 * 109.47041 * 220.00304 * 9 8 7 12 12 C 1.46898 * 110.99961 * 155.00053 * 11 9 8 13 13 H 1.09001 * 109.47520 * 35.00051 * 12 11 9 14 14 C 1.53006 * 109.47006 * 275.00030 * 12 11 9 15 15 C 1.52997 * 109.47123 * 155.00049 * 12 11 9 16 16 C 1.50697 * 109.47173 * 294.99403 * 15 12 11 17 17 H 1.08007 * 119.99916 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00355 * 179.97438 * 16 15 12 19 19 N 1.31509 * 119.99821 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00224 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46807 * 60.00145 * 20 18 16 22 22 H 1.48497 * 109.47048 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47150 * 300.00292 * 20 18 16 24 24 C 1.52994 * 109.47264 * 100.00209 * 9 8 7 25 25 C 1.53003 * 117.49966 * 8.62255 * 24 9 8 26 26 C 1.53001 * 117.50225 * 299.99924 * 24 9 8 27 27 C 1.38233 * 119.99956 * 0.26042 * 8 7 6 28 28 C 1.38231 * 119.99656 * 270.01644 * 5 4 2 29 29 H 1.08991 * 109.47289 * 300.00389 * 1 2 3 30 30 H 1.09001 * 109.47010 * 60.00505 * 1 2 3 31 31 H 1.09007 * 109.46840 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47594 * 239.99649 * 2 1 3 33 33 H 1.08999 * 109.47103 * 59.99348 * 3 2 1 34 34 H 1.08992 * 109.47477 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46697 * 299.99687 * 3 2 1 36 36 H 1.08995 * 109.47534 * 54.99716 * 4 2 1 37 37 H 1.09000 * 109.47156 * 294.99933 * 4 2 1 38 38 H 1.08000 * 120.00269 * 359.97438 * 6 5 4 39 39 H 1.08003 * 119.99674 * 179.97438 * 7 6 5 40 40 H 1.00893 * 110.99825 * 31.04381 * 11 9 8 41 41 H 1.09001 * 109.47002 * 299.99782 * 14 12 11 42 42 H 1.08993 * 109.46955 * 60.00219 * 14 12 11 43 43 H 1.09000 * 109.47050 * 180.02562 * 14 12 11 44 44 H 1.09002 * 109.47223 * 54.99964 * 15 12 11 45 45 H 1.09006 * 109.47396 * 175.00174 * 15 12 11 46 46 H 0.97002 * 120.00259 * 179.97438 * 19 18 16 47 47 H 1.09003 * 115.55017 * 154.32944 * 24 9 8 48 48 H 1.09000 * 117.49732 * 359.97438 * 25 24 9 49 49 H 1.08998 * 117.49702 * 145.02276 * 25 24 9 50 50 H 1.09002 * 117.50027 * 214.98341 * 26 24 9 51 51 H 1.09004 * 117.49384 * 359.97438 * 26 24 9 52 52 H 1.08007 * 119.99643 * 179.72694 * 27 8 7 53 53 H 1.07998 * 120.00458 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.8293 1.1890 6 6 4.3291 0.1713 1.7275 7 6 5.7068 0.0723 1.6717 8 6 6.2972 -1.0274 1.0779 9 6 7.7991 -1.1350 1.0166 10 1 8.2399 -0.1469 1.1487 11 7 8.1982 -1.6786 -0.2885 12 6 9.5654 -1.2675 -0.6343 13 1 10.1714 -1.2233 0.2707 14 6 9.5316 0.1130 -1.2932 15 6 10.1727 -2.2815 -1.6057 16 6 10.3195 -3.6130 -0.9153 17 1 10.0101 -3.7248 0.1135 18 6 10.8477 -4.6887 -1.5971 19 7 11.2239 -4.5527 -2.8498 20 14 11.0290 -6.3392 -0.7414 21 1 9.6944 -6.8160 -0.2977 22 1 11.6174 -7.3238 -1.6846 23 1 11.9186 -6.1902 0.4382 24 6 8.2896 -2.0650 2.1280 25 6 7.2333 -2.8403 2.9180 26 6 7.9713 -1.6701 3.5715 27 6 5.5100 -2.0257 0.5351 28 6 4.1324 -1.9289 0.5949 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6053 -1.7197 1.2953 37 1 1.7516 -0.1583 2.1370 38 1 3.8677 1.0308 2.1911 39 1 6.3218 0.8543 2.0921 40 1 7.5458 -1.4064 -1.0084 41 1 8.9256 0.0689 -2.1982 42 1 9.0990 0.8354 -0.6012 43 1 10.5460 0.4179 -1.5502 44 1 9.5197 -2.3913 -2.4716 45 1 11.1522 -1.9313 -1.9313 46 1 11.5959 -5.3093 -3.3295 47 1 9.2422 -2.5604 1.9402 48 1 6.1889 -2.6874 2.6461 49 1 7.4908 -3.8461 3.2500 50 1 8.7143 -1.9061 4.3333 51 1 7.4127 -0.7475 3.7293 52 1 5.9714 -2.8828 0.0672 53 1 3.5174 -2.7104 0.1735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473312149.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:37 Heat of formation + Delta-G solvation = 8.584961 kcal Electronic energy + Delta-G solvation = -26908.110412 eV Core-core repulsion = 23550.540631 eV Total energy + Delta-G solvation = -3357.569781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.09928 -39.05601 -37.29147 -36.70873 -34.74015 -33.06246 -31.82794 -31.00053 -29.12665 -28.00549 -27.65458 -25.69800 -24.90173 -23.78861 -22.85857 -22.62615 -21.34715 -20.76493 -20.28340 -18.39314 -17.38792 -16.92678 -16.63321 -16.50383 -16.16004 -15.72362 -15.31241 -15.17686 -15.10754 -14.88148 -14.37094 -14.24057 -14.16144 -13.91409 -13.64615 -13.35181 -13.21101 -13.18140 -13.00506 -12.86261 -12.73836 -12.55011 -12.53007 -12.40323 -12.28218 -11.97505 -11.87277 -11.80941 -11.64325 -11.46459 -11.42585 -11.24475 -11.07730 -11.02552 -10.76773 -10.46391 -9.69676 -9.31025 -8.98038 -8.07621 -6.11189 0.48091 0.59358 1.40122 1.42990 1.50126 2.47779 2.89182 2.92243 3.25616 3.48208 3.74254 3.91068 3.96944 4.08242 4.09983 4.13766 4.21624 4.25846 4.26939 4.30948 4.43314 4.45596 4.57362 4.62554 4.65515 4.76550 4.80273 4.81712 4.82193 4.86152 4.91882 4.98859 4.99548 5.08225 5.09733 5.11190 5.17208 5.22866 5.26345 5.31890 5.32749 5.34608 5.43402 5.47141 5.51169 5.53370 5.62115 5.69558 5.82112 5.84067 5.92895 6.19868 6.37935 6.53992 6.74713 7.02708 7.53754 9.04603 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.003174 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.569986 B = 8819.310701 C = 8936.959475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.072 4.072 5 C -0.080 4.080 6 C -0.115 4.115 7 C -0.117 4.117 8 C -0.088 4.088 9 C 0.165 3.835 10 H 0.051 0.949 11 N -0.668 5.668 12 C 0.102 3.898 13 H 0.059 0.941 14 C -0.170 4.170 15 C 0.040 3.960 16 C -0.491 4.491 17 H 0.058 0.942 18 C -0.007 4.007 19 N -0.942 5.942 20 Si 0.952 3.048 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.271 1.271 24 C -0.146 4.146 25 C -0.179 4.179 26 C -0.162 4.162 27 C -0.105 4.105 28 C -0.128 4.128 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.335 0.665 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.056 0.944 44 H -0.011 1.011 45 H -0.010 1.010 46 H 0.257 0.743 47 H 0.082 0.918 48 H 0.099 0.901 49 H 0.081 0.919 50 H 0.098 0.902 51 H 0.104 0.896 52 H 0.109 0.891 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.239 12.785 11.647 26.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.109 4.109 5 C -0.080 4.080 6 C -0.133 4.133 7 C -0.135 4.135 8 C -0.088 4.088 9 C 0.056 3.944 10 H 0.069 0.931 11 N -0.298 5.298 12 C -0.007 4.007 13 H 0.077 0.923 14 C -0.228 4.228 15 C 0.002 3.998 16 C -0.529 4.529 17 H 0.076 0.924 18 C -0.202 4.202 19 N -0.585 5.585 20 Si 0.779 3.221 21 H -0.199 1.199 22 H -0.214 1.214 23 H -0.196 1.196 24 C -0.165 4.165 25 C -0.216 4.216 26 C -0.200 4.200 27 C -0.123 4.123 28 C -0.146 4.146 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.007 0.993 45 H 0.009 0.991 46 H 0.066 0.934 47 H 0.100 0.900 48 H 0.117 0.883 49 H 0.100 0.900 50 H 0.116 0.884 51 H 0.122 0.878 52 H 0.127 0.873 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.966 12.079 11.764 26.133 hybrid contribution 0.655 -0.469 -0.518 0.958 sum -19.311 11.610 11.245 25.182 Atomic orbital electron populations 1.21826 0.94119 1.02034 1.02211 1.21054 0.96165 0.96381 0.97291 1.21904 1.01001 0.95736 1.01982 1.20688 0.89724 1.01633 0.98849 1.20028 0.96521 0.93956 0.97512 1.21154 0.92884 0.99027 1.00254 1.21147 0.95449 0.97290 0.99608 1.19775 0.94192 0.95270 0.99585 1.19838 0.90464 0.94827 0.89284 0.93088 1.60391 1.02699 1.63671 1.03048 1.21452 0.89471 0.92291 0.97532 0.92312 1.22416 1.02069 0.97678 1.00686 1.18969 0.93306 0.93718 0.93772 1.21447 1.37514 0.95626 0.98320 0.92418 1.25827 0.96324 1.02518 0.95559 1.70087 1.45288 1.31985 1.11100 0.85693 0.78340 0.79837 0.78265 1.19883 1.21373 1.19606 1.22182 0.99609 1.02758 0.91911 1.23044 0.97982 0.96214 1.04365 1.22976 1.03181 0.99408 0.94418 1.21023 0.93834 0.98576 0.98871 1.21164 0.94198 0.98764 1.00510 0.91903 0.92530 0.92479 0.92475 0.91775 0.93201 0.92869 0.90754 0.89931 0.84305 0.85173 0.84605 0.93114 0.91832 0.92493 0.99311 0.99145 0.93403 0.89984 0.88288 0.90019 0.88384 0.87809 0.87256 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 71.98 0.66 -0.98 16 2 C -0.09 -1.28 2.91 -10.79 -0.03 -1.32 16 3 C -0.15 -2.08 8.76 71.98 0.63 -1.45 16 4 C -0.07 -1.04 4.84 29.85 0.14 -0.90 16 5 C -0.08 -1.55 4.71 -19.87 -0.09 -1.64 16 6 C -0.12 -2.16 7.96 22.27 0.18 -1.98 16 7 C -0.12 -2.52 9.21 22.27 0.21 -2.32 16 8 C -0.09 -2.32 3.15 -19.87 -0.06 -2.39 16 9 C 0.17 5.05 2.42 44.17 0.11 5.16 16 10 H 0.05 1.49 6.98 -2.39 -0.02 1.48 16 11 N -0.67 -24.84 5.15 -473.30 -2.44 -27.28 16 12 C 0.10 4.15 2.34 44.92 0.11 4.26 16 13 H 0.06 2.45 7.48 -2.39 -0.02 2.44 16 14 C -0.17 -5.65 9.15 71.98 0.66 -4.99 16 15 C 0.04 2.11 4.65 29.85 0.14 2.24 16 16 C -0.49 -28.23 8.84 25.60 0.23 -28.00 16 17 H 0.06 3.27 7.36 -2.91 -0.02 3.25 16 18 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 19 N -0.94 -59.00 13.29 21.45 0.28 -58.72 16 20 Si 0.95 46.51 29.54 68.60 2.03 48.53 16 21 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 24 C -0.15 -4.65 5.72 -10.79 -0.06 -4.71 16 25 C -0.18 -5.15 9.50 30.60 0.29 -4.86 16 26 C -0.16 -4.06 10.02 30.60 0.31 -3.75 16 27 C -0.10 -2.91 7.26 22.27 0.16 -2.75 16 28 C -0.13 -2.99 9.70 22.27 0.22 -2.78 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.82 6.26 -2.39 -0.01 0.80 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 1.03 8.09 -2.39 -0.02 1.02 16 37 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 38 H 0.14 1.95 8.04 -2.91 -0.02 1.93 16 39 H 0.13 2.41 8.04 -2.91 -0.02 2.39 16 40 H 0.34 12.14 7.72 -89.70 -0.69 11.44 16 41 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 42 H 0.06 1.79 7.43 -2.39 -0.02 1.77 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H -0.01 -0.67 8.14 -2.39 -0.02 -0.68 16 45 H -0.01 -0.56 8.14 -2.38 -0.02 -0.57 16 46 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 47 H 0.08 3.18 7.56 -2.39 -0.02 3.16 16 48 H 0.10 2.81 5.42 -2.39 -0.01 2.80 16 49 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 50 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.10 2.25 7.68 -2.38 -0.02 2.23 16 52 H 0.11 3.60 7.71 -2.91 -0.02 3.58 16 53 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -64.83 413.00 4.27 -60.56 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.16 Total: 30.00 kcal Atomic # 6 Polarization: -57.34 SS G_CDS: 4.24 Total: -53.09 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -2.15 Total: -86.00 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -64.83 4.27 -60.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473312149.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.143 kcal (2) G-P(sol) polarization free energy of solvation -64.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds