Wall clock time and date at job start Tue Mar 31 2020 10:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47155 * 2 1 4 4 C 1.52995 * 109.47328 * 120.00407 * 2 1 3 5 5 C 1.50698 * 109.47377 * 64.99591 * 4 2 1 6 6 C 1.38228 * 120.00195 * 270.21326 * 5 4 2 7 7 C 1.38238 * 120.00114 * 180.26174 * 6 5 4 8 8 C 1.38234 * 119.99675 * 359.50218 * 7 6 5 9 9 C 1.50702 * 120.00257 * 180.25732 * 8 7 6 10 10 H 1.09003 * 109.46540 * 20.00411 * 9 8 7 11 11 N 1.46898 * 109.47167 * 140.00110 * 9 8 7 12 12 C 1.46904 * 111.00123 * 205.00250 * 11 9 8 13 13 H 1.09003 * 109.46817 * 35.00214 * 12 11 9 14 14 C 1.52995 * 109.47346 * 275.00403 * 12 11 9 15 15 C 1.52999 * 109.47096 * 154.99739 * 12 11 9 16 16 C 1.50698 * 109.47595 * 295.00313 * 15 12 11 17 17 H 1.08002 * 119.99741 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99848 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99641 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00133 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47116 * 89.99745 * 20 18 16 22 22 H 1.48503 * 109.46957 * 209.99702 * 20 18 16 23 23 H 1.48496 * 109.47001 * 329.99700 * 20 18 16 24 24 C 1.52995 * 109.47306 * 260.00750 * 9 8 7 25 25 C 1.52998 * 117.49948 * 128.74868 * 24 9 8 26 26 C 1.52995 * 117.50181 * 60.08556 * 24 9 8 27 27 C 1.38235 * 120.00220 * 0.28720 * 8 7 6 28 28 C 1.38234 * 119.99720 * 90.00111 * 5 4 2 29 29 H 1.08996 * 109.47566 * 60.00035 * 1 2 3 30 30 H 1.09002 * 109.47099 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47319 * 299.99845 * 1 2 3 32 32 H 1.09001 * 109.46579 * 240.00225 * 2 1 3 33 33 H 1.08993 * 109.47271 * 180.02562 * 3 2 1 34 34 H 1.09009 * 109.47082 * 300.00694 * 3 2 1 35 35 H 1.09001 * 109.46880 * 59.99886 * 3 2 1 36 36 H 1.09010 * 109.46864 * 304.99796 * 4 2 1 37 37 H 1.09000 * 109.46991 * 185.00112 * 4 2 1 38 38 H 1.08004 * 120.00270 * 0.03576 * 6 5 4 39 39 H 1.08002 * 120.00519 * 179.78838 * 7 6 5 40 40 H 1.00904 * 110.99959 * 81.05260 * 11 9 8 41 41 H 1.09003 * 109.47008 * 299.99693 * 14 12 11 42 42 H 1.09001 * 109.47109 * 59.99758 * 14 12 11 43 43 H 1.08996 * 109.47515 * 179.97438 * 14 12 11 44 44 H 1.09010 * 109.46573 * 55.00691 * 15 12 11 45 45 H 1.09006 * 109.46892 * 174.99807 * 15 12 11 46 46 H 0.97005 * 119.99651 * 180.02562 * 19 18 16 47 47 H 1.09002 * 115.54690 * 274.41144 * 24 9 8 48 48 H 1.08999 * 117.50324 * 359.97438 * 25 24 9 49 49 H 1.09000 * 117.50259 * 145.02224 * 25 24 9 50 50 H 1.09004 * 117.50009 * 214.98276 * 26 24 9 51 51 H 1.08999 * 117.49993 * 359.97438 * 26 24 9 52 52 H 1.07996 * 120.00471 * 179.97438 * 27 8 7 53 53 H 1.08001 * 120.00294 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 -2.1733 1.1888 6 6 0.4337 -2.5813 1.7234 7 6 0.0704 -3.9141 1.6729 8 6 0.9102 -4.8373 1.0785 9 6 0.5116 -6.2894 1.0182 10 1 -0.5667 -6.3759 1.1515 11 7 0.8901 -6.8473 -0.2870 12 6 0.0468 -7.9998 -0.6314 13 1 -0.9634 -7.8357 -0.2565 14 6 0.6275 -9.2646 0.0040 15 6 0.0058 -8.1654 -2.1519 16 6 -0.6778 -6.9726 -2.7690 17 1 -1.0459 -6.1758 -2.1397 18 6 -0.8325 -6.8981 -4.1370 19 7 -1.4287 -5.8569 -4.6756 20 14 -0.1952 -8.2760 -5.2255 21 1 -1.2604 -9.2940 -5.4099 22 1 0.1948 -7.7225 -6.5472 23 1 0.9866 -8.9066 -4.5846 24 6 1.2263 -7.0610 2.1293 25 6 0.3695 -7.9394 3.0432 26 6 0.9597 -6.6301 3.5729 27 6 2.1160 -4.4287 0.5400 28 6 2.4814 -3.0966 0.5949 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6054 -0.2618 2.1370 37 1 3.1263 -0.6443 1.2950 38 1 -0.2245 -1.8593 2.1839 39 1 -0.8717 -4.2335 2.0936 40 1 1.8677 -7.0966 -0.3039 41 1 1.6378 -9.4287 -0.3710 42 1 0.6566 -9.1466 1.0872 43 1 0.0016 -10.1197 -0.2512 44 1 1.0230 -8.2407 -2.5367 45 1 -0.5459 -9.0712 -2.4039 46 1 -1.5378 -5.8046 -5.6381 47 1 2.2284 -7.4146 1.8865 48 1 -0.7034 -7.9672 2.8532 49 1 0.8080 -8.8705 3.4021 50 1 1.7863 -6.7003 4.2800 51 1 0.2755 -5.7965 3.7311 52 1 2.7723 -5.1499 0.0760 53 1 3.4236 -2.7774 0.1745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473312150.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:40 Heat of formation + Delta-G solvation = 23.545320 kcal Electronic energy + Delta-G solvation = -26912.603256 eV Core-core repulsion = 23555.682206 eV Total energy + Delta-G solvation = -3356.921051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.76417 -38.19800 -35.99182 -35.65330 -32.73070 -31.87810 -30.67183 -29.80628 -27.76685 -27.14033 -26.63088 -24.31456 -22.79458 -22.40177 -22.14696 -21.37643 -20.06183 -19.86419 -19.48112 -16.53411 -16.21063 -15.93287 -15.34552 -15.08774 -14.75302 -14.39846 -14.24140 -14.16301 -13.89906 -13.60748 -13.07172 -13.01130 -12.85334 -12.37325 -12.31450 -12.26045 -12.18205 -12.09436 -11.77008 -11.68975 -11.58178 -11.38436 -11.25502 -11.20832 -10.77312 -10.72764 -10.63719 -10.59579 -10.52281 -10.39691 -10.29656 -9.93799 -9.58492 -9.39342 -8.97334 -8.53540 -8.36722 -8.13453 -7.63010 -5.84829 -3.78177 1.68649 1.77893 3.39078 3.46861 3.49941 3.82435 4.06637 4.58851 4.59695 4.81916 4.85786 4.87162 4.95972 4.99053 5.11889 5.17357 5.30144 5.34789 5.38155 5.48616 5.50573 5.55277 5.62596 5.64390 5.66846 5.68649 5.80030 5.82238 5.85400 5.88372 5.89410 5.91524 5.93800 5.99177 6.05822 6.11093 6.13506 6.23246 6.33674 6.37268 6.39893 6.42716 6.45109 6.54914 6.76211 6.87713 6.91690 6.99662 7.20676 7.35208 7.39051 7.85212 7.95972 8.10847 8.78683 9.27589 9.78457 11.29390 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.009210 B = 0.004340 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.590714 B = 6450.783517 C = 8869.780826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.072 4.072 5 C -0.090 4.090 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.050 4.050 9 C 0.157 3.843 10 H 0.083 0.917 11 N -0.649 5.649 12 C 0.103 3.897 13 H 0.068 0.932 14 C -0.191 4.191 15 C -0.005 4.005 16 C -0.486 4.486 17 H 0.076 0.924 18 C 0.060 3.940 19 N -0.909 5.909 20 Si 0.873 3.127 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.268 1.268 24 C -0.170 4.170 25 C -0.178 4.178 26 C -0.175 4.175 27 C -0.089 4.089 28 C -0.119 4.119 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.331 0.669 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.258 0.742 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.089 0.911 50 H 0.088 0.912 51 H 0.094 0.906 52 H 0.118 0.882 53 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.555 6.058 16.983 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.109 4.109 5 C -0.090 4.090 6 C -0.135 4.135 7 C -0.134 4.134 8 C -0.050 4.050 9 C 0.046 3.954 10 H 0.101 0.899 11 N -0.277 5.277 12 C -0.007 4.007 13 H 0.086 0.914 14 C -0.250 4.250 15 C -0.042 4.042 16 C -0.524 4.524 17 H 0.094 0.906 18 C -0.139 4.139 19 N -0.550 5.550 20 Si 0.702 3.298 21 H -0.207 1.207 22 H -0.217 1.217 23 H -0.193 1.193 24 C -0.190 4.190 25 C -0.215 4.215 26 C -0.213 4.213 27 C -0.107 4.107 28 C -0.137 4.137 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.150 0.850 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.033 0.967 45 H 0.029 0.971 46 H 0.068 0.932 47 H 0.119 0.881 48 H 0.112 0.888 49 H 0.108 0.892 50 H 0.106 0.894 51 H 0.113 0.887 52 H 0.136 0.864 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.114 6.575 16.414 19.059 hybrid contribution 0.660 -1.453 -0.248 1.615 sum 7.774 5.122 16.166 18.655 Atomic orbital electron populations 1.21913 0.95041 1.02688 1.01136 1.21089 0.96339 0.95479 0.98218 1.21850 1.00693 0.96205 1.01605 1.20623 1.00594 0.91607 0.98074 1.19702 0.94964 0.95001 0.99328 1.20844 0.96186 0.95452 1.01022 1.20898 0.99111 0.93024 1.00321 1.19663 0.94142 0.94703 0.96540 1.20140 0.98595 0.89711 0.86965 0.89910 1.60606 1.07050 1.34024 1.25979 1.21561 0.95432 0.85842 0.97839 0.91388 1.22780 1.00997 1.00317 1.00886 1.19612 0.96797 0.97111 0.90699 1.21040 1.35160 1.04391 0.91834 0.90559 1.25009 0.95374 0.95404 0.98086 1.69925 1.44598 1.29445 1.11007 0.86895 0.79736 0.83002 0.80217 1.20737 1.21729 1.19337 1.23275 1.00257 1.03006 0.92431 1.23001 0.99629 0.94578 1.04275 1.22910 1.03355 0.98321 0.96673 1.20838 0.96422 0.95516 0.97911 1.20935 0.99573 0.93185 1.00056 0.92915 0.91635 0.93168 0.90884 0.92898 0.92705 0.92910 0.91517 0.91491 0.86802 0.86835 0.85023 0.93399 0.92523 0.92889 0.96712 0.97111 0.93200 0.88120 0.88797 0.89227 0.89386 0.88746 0.86380 0.86805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.75 37.16 0.33 -1.42 16 2 C -0.09 -1.02 2.91 -90.62 -0.26 -1.28 16 3 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 4 C -0.07 -0.76 4.84 -27.89 -0.13 -0.90 16 5 C -0.09 -1.17 4.72 -104.63 -0.49 -1.66 16 6 C -0.12 -1.55 7.95 -39.59 -0.31 -1.86 16 7 C -0.12 -1.65 9.22 -39.58 -0.36 -2.01 16 8 C -0.05 -0.76 4.61 -104.62 -0.48 -1.24 16 9 C 0.16 2.37 2.41 -68.87 -0.17 2.20 16 10 H 0.08 1.34 7.05 -51.93 -0.37 0.98 16 11 N -0.65 -11.57 5.22 -100.95 -0.53 -12.10 16 12 C 0.10 1.95 2.53 -67.71 -0.17 1.78 16 13 H 0.07 1.36 7.43 -51.93 -0.39 0.98 16 14 C -0.19 -2.94 8.92 37.15 0.33 -2.61 16 15 C 0.00 -0.11 3.72 -27.88 -0.10 -0.21 16 16 C -0.49 -13.94 9.39 -34.44 -0.32 -14.27 16 17 H 0.08 2.41 7.99 -52.49 -0.42 1.99 16 18 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 19 N -0.91 -28.82 13.96 55.43 0.77 -28.05 16 20 Si 0.87 22.27 27.47 -169.99 -4.67 17.60 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 24 C -0.17 -2.09 3.80 -90.63 -0.34 -2.43 16 25 C -0.18 -1.97 8.37 -26.69 -0.22 -2.19 16 26 C -0.17 -1.91 9.87 -26.70 -0.26 -2.17 16 27 C -0.09 -1.34 9.32 -39.58 -0.37 -1.71 16 28 C -0.12 -1.67 9.70 -39.58 -0.38 -2.05 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.88 6.25 -51.93 -0.32 0.56 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.64 8.09 -51.92 -0.42 0.22 16 37 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.11 1.30 8.03 -52.48 -0.42 0.88 16 39 H 0.11 1.48 8.04 -52.49 -0.42 1.06 16 40 H 0.33 5.43 7.43 -39.29 -0.29 5.14 16 41 H 0.05 0.72 8.13 -51.93 -0.42 0.29 16 42 H 0.06 0.76 4.70 -51.93 -0.24 0.52 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.01 0.36 7.20 -51.92 -0.37 -0.02 16 45 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 46 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 47 H 0.10 1.23 7.93 -51.93 -0.41 0.82 16 48 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 49 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 51 H 0.09 1.04 7.68 -51.93 -0.40 0.64 16 52 H 0.12 1.74 7.25 -52.49 -0.38 1.36 16 53 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 409.64 15.07 6.17 6.17 Total: -1.00 -31.26 409.64 -11.66 -42.91 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -9.91 Total: 6.78 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: -3.50 Total: -33.32 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.25 Total: -40.15 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.26 -11.66 -42.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473312150.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.460 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds