Wall clock time and date at job start Tue Mar 31 2020 10:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47155 * 2 1 4 4 C 1.52995 * 109.47328 * 120.00407 * 2 1 3 5 5 C 1.50698 * 109.47377 * 64.99591 * 4 2 1 6 6 C 1.38228 * 120.00195 * 270.21326 * 5 4 2 7 7 C 1.38238 * 120.00114 * 180.26174 * 6 5 4 8 8 C 1.38234 * 119.99675 * 359.50218 * 7 6 5 9 9 C 1.50702 * 120.00257 * 180.25732 * 8 7 6 10 10 H 1.09003 * 109.46540 * 20.00411 * 9 8 7 11 11 N 1.46898 * 109.47167 * 140.00110 * 9 8 7 12 12 C 1.46904 * 111.00123 * 205.00250 * 11 9 8 13 13 H 1.09003 * 109.46817 * 35.00214 * 12 11 9 14 14 C 1.52995 * 109.47346 * 275.00403 * 12 11 9 15 15 C 1.52999 * 109.47096 * 154.99739 * 12 11 9 16 16 C 1.50698 * 109.47595 * 295.00313 * 15 12 11 17 17 H 1.08002 * 119.99741 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99848 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99641 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00133 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47116 * 89.99745 * 20 18 16 22 22 H 1.48503 * 109.46957 * 209.99702 * 20 18 16 23 23 H 1.48496 * 109.47001 * 329.99700 * 20 18 16 24 24 C 1.52995 * 109.47306 * 260.00750 * 9 8 7 25 25 C 1.52998 * 117.49948 * 128.74868 * 24 9 8 26 26 C 1.52995 * 117.50181 * 60.08556 * 24 9 8 27 27 C 1.38235 * 120.00220 * 0.28720 * 8 7 6 28 28 C 1.38234 * 119.99720 * 90.00111 * 5 4 2 29 29 H 1.08996 * 109.47566 * 60.00035 * 1 2 3 30 30 H 1.09002 * 109.47099 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47319 * 299.99845 * 1 2 3 32 32 H 1.09001 * 109.46579 * 240.00225 * 2 1 3 33 33 H 1.08993 * 109.47271 * 180.02562 * 3 2 1 34 34 H 1.09009 * 109.47082 * 300.00694 * 3 2 1 35 35 H 1.09001 * 109.46880 * 59.99886 * 3 2 1 36 36 H 1.09010 * 109.46864 * 304.99796 * 4 2 1 37 37 H 1.09000 * 109.46991 * 185.00112 * 4 2 1 38 38 H 1.08004 * 120.00270 * 0.03576 * 6 5 4 39 39 H 1.08002 * 120.00519 * 179.78838 * 7 6 5 40 40 H 1.00904 * 110.99959 * 81.05260 * 11 9 8 41 41 H 1.09003 * 109.47008 * 299.99693 * 14 12 11 42 42 H 1.09001 * 109.47109 * 59.99758 * 14 12 11 43 43 H 1.08996 * 109.47515 * 179.97438 * 14 12 11 44 44 H 1.09010 * 109.46573 * 55.00691 * 15 12 11 45 45 H 1.09006 * 109.46892 * 174.99807 * 15 12 11 46 46 H 0.97005 * 119.99651 * 180.02562 * 19 18 16 47 47 H 1.09002 * 115.54690 * 274.41144 * 24 9 8 48 48 H 1.08999 * 117.50324 * 359.97438 * 25 24 9 49 49 H 1.09000 * 117.50259 * 145.02224 * 25 24 9 50 50 H 1.09004 * 117.50009 * 214.98276 * 26 24 9 51 51 H 1.08999 * 117.49993 * 359.97438 * 26 24 9 52 52 H 1.07996 * 120.00471 * 179.97438 * 27 8 7 53 53 H 1.08001 * 120.00294 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 -2.1733 1.1888 6 6 0.4337 -2.5813 1.7234 7 6 0.0704 -3.9141 1.6729 8 6 0.9102 -4.8373 1.0785 9 6 0.5116 -6.2894 1.0182 10 1 -0.5667 -6.3759 1.1515 11 7 0.8901 -6.8473 -0.2870 12 6 0.0468 -7.9998 -0.6314 13 1 -0.9634 -7.8357 -0.2565 14 6 0.6275 -9.2646 0.0040 15 6 0.0058 -8.1654 -2.1519 16 6 -0.6778 -6.9726 -2.7690 17 1 -1.0459 -6.1758 -2.1397 18 6 -0.8325 -6.8981 -4.1370 19 7 -1.4287 -5.8569 -4.6756 20 14 -0.1952 -8.2760 -5.2255 21 1 -1.2604 -9.2940 -5.4099 22 1 0.1948 -7.7225 -6.5472 23 1 0.9866 -8.9066 -4.5846 24 6 1.2263 -7.0610 2.1293 25 6 0.3695 -7.9394 3.0432 26 6 0.9597 -6.6301 3.5729 27 6 2.1160 -4.4287 0.5400 28 6 2.4814 -3.0966 0.5949 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6054 -0.2618 2.1370 37 1 3.1263 -0.6443 1.2950 38 1 -0.2245 -1.8593 2.1839 39 1 -0.8717 -4.2335 2.0936 40 1 1.8677 -7.0966 -0.3039 41 1 1.6378 -9.4287 -0.3710 42 1 0.6566 -9.1466 1.0872 43 1 0.0016 -10.1197 -0.2512 44 1 1.0230 -8.2407 -2.5367 45 1 -0.5459 -9.0712 -2.4039 46 1 -1.5378 -5.8046 -5.6381 47 1 2.2284 -7.4146 1.8865 48 1 -0.7034 -7.9672 2.8532 49 1 0.8080 -8.8705 3.4021 50 1 1.7863 -6.7003 4.2800 51 1 0.2755 -5.7965 3.7311 52 1 2.7723 -5.1499 0.0760 53 1 3.4236 -2.7774 0.1745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473312150.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:40 Heat of formation + Delta-G solvation = 8.490576 kcal Electronic energy + Delta-G solvation = -26913.256079 eV Core-core repulsion = 23555.682206 eV Total energy + Delta-G solvation = -3357.573873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.87067 -39.29450 -37.08158 -36.85801 -34.64746 -33.31030 -31.80271 -31.16637 -29.49346 -28.03001 -27.67601 -25.48265 -24.46633 -23.57702 -23.18813 -22.39119 -21.43236 -20.90226 -20.70345 -18.75311 -17.33705 -17.11503 -16.41786 -16.35198 -15.99109 -15.79921 -15.43554 -15.17508 -15.11682 -14.91571 -14.58576 -14.17427 -14.13993 -13.93581 -13.56502 -13.42023 -13.37220 -13.19797 -13.04168 -12.94219 -12.66274 -12.57147 -12.38772 -12.32237 -12.23969 -12.11793 -11.76094 -11.66136 -11.60342 -11.54674 -11.50179 -11.45352 -11.27391 -11.10882 -10.67111 -10.63554 -9.65647 -9.24287 -8.97292 -8.15422 -6.13810 0.57927 0.65714 1.36736 1.39202 1.50331 2.43417 2.86593 2.97922 3.17961 3.40222 3.84975 3.89166 3.95760 4.01145 4.10670 4.11450 4.14333 4.23905 4.25964 4.30606 4.41706 4.46358 4.55466 4.60492 4.62760 4.73753 4.78162 4.79850 4.80558 4.85310 4.93741 4.97431 4.99262 5.03628 5.07887 5.10358 5.17539 5.18996 5.25002 5.27729 5.28358 5.29148 5.34179 5.40799 5.45122 5.50600 5.56416 5.66200 5.78540 5.84643 5.87591 6.26278 6.39720 6.54391 6.75861 6.94467 7.46518 9.02392 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.009210 B = 0.004340 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.590714 B = 6450.783517 C = 8869.780826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.067 4.067 5 C -0.091 4.091 6 C -0.119 4.119 7 C -0.130 4.130 8 C -0.067 4.067 9 C 0.165 3.835 10 H 0.063 0.937 11 N -0.671 5.671 12 C 0.110 3.890 13 H 0.049 0.951 14 C -0.178 4.178 15 C -0.003 4.003 16 C -0.485 4.485 17 H 0.029 0.971 18 C -0.006 4.006 19 N -0.961 5.961 20 Si 0.946 3.054 21 H -0.270 1.270 22 H -0.291 1.291 23 H -0.248 1.248 24 C -0.176 4.176 25 C -0.171 4.171 26 C -0.165 4.165 27 C -0.107 4.107 28 C -0.130 4.130 29 H 0.048 0.952 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.119 0.881 40 H 0.339 0.661 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.016 0.984 45 H 0.017 0.983 46 H 0.259 0.741 47 H 0.107 0.893 48 H 0.087 0.913 49 H 0.107 0.893 50 H 0.103 0.897 51 H 0.090 0.910 52 H 0.116 0.884 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.202 5.253 18.471 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.199 4.199 4 C -0.104 4.104 5 C -0.091 4.091 6 C -0.137 4.137 7 C -0.149 4.149 8 C -0.068 4.068 9 C 0.055 3.945 10 H 0.081 0.919 11 N -0.301 5.301 12 C 0.000 4.000 13 H 0.068 0.932 14 C -0.237 4.237 15 C -0.041 4.041 16 C -0.524 4.524 17 H 0.047 0.953 18 C -0.200 4.200 19 N -0.604 5.604 20 Si 0.771 3.229 21 H -0.195 1.195 22 H -0.218 1.218 23 H -0.172 1.172 24 C -0.196 4.196 25 C -0.208 4.208 26 C -0.202 4.202 27 C -0.125 4.125 28 C -0.148 4.148 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.150 0.850 39 H 0.137 0.863 40 H 0.158 0.842 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.035 0.965 46 H 0.068 0.932 47 H 0.125 0.875 48 H 0.106 0.894 49 H 0.125 0.875 50 H 0.122 0.878 51 H 0.108 0.892 52 H 0.134 0.866 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.769 5.757 17.932 20.775 hybrid contribution 0.077 -1.069 -0.673 1.265 sum 8.846 4.688 17.259 19.953 Atomic orbital electron populations 1.21909 0.95722 1.01225 1.01906 1.21064 0.95742 0.96777 0.97498 1.21804 1.01269 0.94578 1.02213 1.20647 1.01542 0.89772 0.98427 1.20015 0.94546 0.96290 0.98275 1.21106 0.96580 0.95321 1.00693 1.21095 0.99351 0.93658 1.00749 1.19792 0.94611 0.95018 0.97353 1.19973 0.97637 0.90089 0.86814 0.91925 1.60445 1.07359 1.33895 1.28387 1.21292 0.95332 0.88366 0.94984 0.93247 1.22626 1.01118 0.98026 1.01927 1.19586 0.95849 0.94809 0.93819 1.21289 1.34672 1.04777 0.91621 0.95256 1.25968 0.95841 0.98270 0.99919 1.70106 1.46731 1.32133 1.11403 0.85721 0.79916 0.79534 0.77726 1.19530 1.21753 1.17193 1.23040 1.00412 1.03886 0.92219 1.23062 0.99206 0.95329 1.03225 1.22940 1.03541 0.98118 0.95645 1.20953 0.96680 0.96277 0.98628 1.21192 1.00456 0.92971 1.00147 0.93270 0.94134 0.91321 0.93084 0.91970 0.92823 0.91597 0.89879 0.90161 0.84954 0.86292 0.84204 0.92502 0.90383 0.92363 0.96610 0.96491 0.93218 0.87505 0.89408 0.87468 0.87831 0.89200 0.86590 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.75 71.98 0.63 -2.80 16 2 C -0.09 -1.94 2.91 -10.80 -0.03 -1.97 16 3 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 4 C -0.07 -1.31 4.84 29.85 0.14 -1.16 16 5 C -0.09 -2.33 4.72 -19.87 -0.09 -2.42 16 6 C -0.12 -3.14 7.95 22.27 0.18 -2.96 16 7 C -0.13 -3.83 9.22 22.27 0.21 -3.63 16 8 C -0.07 -2.12 4.61 -19.87 -0.09 -2.21 16 9 C 0.17 5.11 2.41 44.17 0.11 5.22 16 10 H 0.06 2.15 7.05 -2.39 -0.02 2.13 16 11 N -0.67 -24.45 5.22 -473.31 -2.47 -26.93 16 12 C 0.11 4.20 2.53 44.91 0.11 4.31 16 13 H 0.05 2.04 7.43 -2.39 -0.02 2.02 16 14 C -0.18 -5.13 8.92 71.98 0.64 -4.49 16 15 C 0.00 -0.13 3.72 29.85 0.11 -0.02 16 16 C -0.49 -28.77 9.39 25.60 0.24 -28.53 16 17 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 18 C -0.01 -0.34 5.47 84.65 0.46 0.12 16 19 N -0.96 -63.11 13.96 21.45 0.30 -62.81 16 20 Si 0.95 46.17 27.47 68.60 1.88 48.06 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 24 C -0.18 -4.14 3.80 -10.80 -0.04 -4.18 16 25 C -0.17 -3.48 8.37 30.62 0.26 -3.22 16 26 C -0.16 -3.34 9.87 30.62 0.30 -3.04 16 27 C -0.11 -3.33 9.32 22.27 0.21 -3.12 16 28 C -0.13 -3.63 9.70 22.27 0.22 -3.42 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 1.11 6.25 -2.39 -0.01 1.10 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.38 8.09 -2.38 -0.02 1.36 16 37 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 38 H 0.13 2.90 8.03 -2.91 -0.02 2.88 16 39 H 0.12 3.24 8.04 -2.91 -0.02 3.21 16 40 H 0.34 11.11 7.43 -89.69 -0.67 10.44 16 41 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 42 H 0.08 1.91 4.70 -2.39 -0.01 1.90 16 43 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.02 0.74 7.20 -2.38 -0.02 0.72 16 45 H 0.02 0.78 7.57 -2.38 -0.02 0.76 16 46 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 47 H 0.11 2.42 7.93 -2.39 -0.02 2.40 16 48 H 0.09 1.91 8.05 -2.39 -0.02 1.89 16 49 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 51 H 0.09 1.91 7.68 -2.39 -0.02 1.89 16 52 H 0.12 3.52 7.25 -2.91 -0.02 3.50 16 53 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -70.02 409.64 4.06 -65.96 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: 0.13 Total: 34.88 kcal Atomic # 6 Polarization: -63.38 SS G_CDS: 4.22 Total: -59.16 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -2.17 Total: -89.74 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.88 Total: 48.06 kcal Total: -70.02 4.06 -65.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473312150.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.447 kcal (2) G-P(sol) polarization free energy of solvation -70.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds