Wall clock time and date at job start Tue Mar 31 2020 10:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47156 * 2 1 4 4 C 1.52997 * 109.47031 * 240.00531 * 2 1 3 5 5 C 1.50698 * 109.47300 * 64.99863 * 4 2 1 6 6 H 1.08000 * 120.00158 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00208 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99744 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00025 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47126 * 89.99647 * 9 7 5 11 11 H 1.48500 * 109.47006 * 209.99890 * 9 7 5 12 12 H 1.48499 * 109.46934 * 329.99454 * 9 7 5 13 13 C 1.52998 * 109.47185 * 120.00189 * 2 1 3 14 14 N 1.46890 * 109.47298 * 294.99876 * 13 2 1 15 15 C 1.47842 * 111.00312 * 295.81399 * 14 13 2 16 16 C 1.54914 * 104.79727 * 213.63483 * 15 14 13 17 17 C 1.55145 * 101.64935 * 37.07101 * 16 15 14 18 18 C 1.47446 * 111.00277 * 174.97075 * 14 13 2 19 19 H 1.09001 * 109.88942 * 242.67177 * 18 14 13 20 20 C 1.53008 * 109.88623 * 3.85200 * 18 14 13 21 21 C 1.52991 * 109.47137 * 182.45804 * 20 18 14 22 22 C 1.53001 * 109.47248 * 174.92327 * 21 20 18 23 23 C 1.50698 * 109.47214 * 180.02562 * 22 21 20 24 24 C 1.38236 * 119.99854 * 269.72339 * 23 22 21 25 25 C 1.38231 * 120.00115 * 179.76978 * 24 23 22 26 26 C 1.38235 * 119.99741 * 0.50072 * 25 24 23 27 27 C 1.38234 * 120.00100 * 359.75271 * 26 25 24 28 28 C 1.38231 * 120.00310 * 90.00005 * 23 22 21 29 29 H 1.09003 * 109.47118 * 299.99199 * 1 2 3 30 30 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47595 * 59.99665 * 1 2 3 32 32 H 1.09005 * 109.47524 * 184.99982 * 4 2 1 33 33 H 1.09003 * 109.47219 * 304.99736 * 4 2 1 34 34 H 0.96997 * 120.00125 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47125 * 55.00482 * 13 2 1 36 36 H 1.09009 * 109.46473 * 174.99802 * 13 2 1 37 37 H 1.09002 * 110.37549 * 332.46112 * 15 14 13 38 38 H 1.09001 * 110.37681 * 94.80912 * 15 14 13 39 39 H 1.08993 * 110.99139 * 278.97611 * 16 15 14 40 40 H 1.09006 * 110.98609 * 155.15893 * 16 15 14 41 41 H 1.08999 * 110.69612 * 205.96208 * 17 16 15 42 42 H 1.09000 * 110.70384 * 82.73005 * 17 16 15 43 43 H 1.09003 * 109.46852 * 302.45786 * 20 18 14 44 44 H 1.09001 * 109.46470 * 62.45596 * 20 18 14 45 45 H 1.09003 * 109.47581 * 294.92215 * 21 20 18 46 46 H 1.09005 * 109.47563 * 54.92064 * 21 20 18 47 47 H 1.09006 * 109.46917 * 299.99913 * 22 21 20 48 48 H 1.08999 * 109.47417 * 59.99575 * 22 21 20 49 49 H 1.07999 * 119.99723 * 359.97438 * 24 23 22 50 50 H 1.07998 * 120.00373 * 180.23476 * 25 24 23 51 51 H 1.08008 * 120.00180 * 179.72642 * 26 25 24 52 52 H 1.08008 * 119.99858 * 179.97438 * 27 26 25 53 53 H 1.08004 * 120.00047 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0572 -2.4766 6 1 1.0806 0.9748 -2.3756 7 6 1.9922 -0.4020 -3.7284 8 7 2.6754 -1.5190 -3.8513 9 14 1.4986 0.5633 -5.2496 10 1 2.5646 1.5421 -5.5823 11 1 1.3108 -0.3704 -6.3890 12 1 0.2279 1.2854 -4.9869 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.3042 1.3636 2.4672 16 6 2.5568 1.6558 3.9674 17 6 2.9268 0.2475 4.5029 18 6 2.0216 -0.6882 3.6746 19 1 1.1252 -0.9360 4.2432 20 6 2.7834 -1.9656 3.3155 21 6 3.1092 -2.7414 4.5933 22 6 3.7579 -4.0779 4.2272 23 6 4.0782 -4.8423 5.4858 24 6 5.3077 -4.6830 6.0972 25 6 5.5997 -5.3805 7.2544 26 6 4.6661 -6.2453 7.7943 27 6 3.4386 -6.4086 7.1800 28 6 3.1447 -5.7071 6.0257 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 3.1263 -0.7994 -1.2057 33 1 1.6053 -1.7197 -1.2953 34 1 2.9220 -1.8422 -4.7319 35 1 1.6054 -1.7198 1.2950 36 1 3.1264 -0.7995 1.2054 37 1 3.2480 1.3310 1.9229 38 1 1.6443 2.1184 2.0395 39 1 1.6544 2.0321 4.4492 40 1 3.3854 2.3524 4.0954 41 1 2.6959 0.1664 5.5651 42 1 3.9786 0.0292 4.3183 43 1 2.1682 -2.5840 2.6619 44 1 3.7093 -1.7044 2.8030 45 1 3.7973 -2.1594 5.2064 46 1 2.1909 -2.9241 5.1516 47 1 3.0697 -4.6599 3.6142 48 1 4.6761 -3.8952 3.6689 49 1 6.0388 -4.0110 5.6727 50 1 6.5588 -5.2532 7.7342 51 1 4.8959 -6.7937 8.6960 52 1 2.7094 -7.0845 7.6016 53 1 2.1856 -5.8347 5.5457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474311522.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:45 Heat of formation + Delta-G solvation = -18.746144 kcal Electronic energy + Delta-G solvation = -26077.546080 eV Core-core repulsion = 22718.791134 eV Total energy + Delta-G solvation = -3358.754946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.78255 -40.08457 -37.07911 -35.89050 -34.45207 -32.75425 -31.92076 -31.74159 -29.45984 -28.73678 -26.87265 -26.24891 -24.73807 -23.43618 -23.40138 -22.34454 -21.53849 -20.92621 -19.73357 -18.45456 -17.60568 -17.18187 -16.68053 -16.42318 -16.31696 -15.95431 -15.83098 -15.43366 -15.03438 -14.52317 -14.39594 -14.37200 -14.21755 -14.11948 -13.77546 -13.57490 -13.33088 -13.21728 -12.93914 -12.76972 -12.70220 -12.65536 -12.36935 -12.21072 -12.15105 -11.98762 -11.94415 -11.89948 -11.64381 -11.61159 -11.53387 -11.47566 -11.20352 -11.00543 -10.86348 -10.53627 -9.79916 -9.57038 -9.10256 -8.17773 -6.26771 0.47942 0.52239 1.39063 1.40188 1.51341 2.41419 2.89789 3.09621 3.15390 3.67026 3.76085 3.86525 3.93120 3.98854 4.18300 4.18726 4.19848 4.26253 4.30831 4.36323 4.47547 4.48928 4.55519 4.60757 4.62705 4.67910 4.71573 4.78907 4.84457 4.91247 4.92831 4.95662 5.00575 5.05333 5.07586 5.10311 5.17387 5.20489 5.23917 5.28842 5.33928 5.39257 5.44998 5.49103 5.51784 5.57172 5.60923 5.65088 5.77757 5.80718 5.88885 6.15934 6.17388 6.22400 6.34053 6.88878 7.41237 8.94312 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.002460 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.243827 B =11379.235580 C =12648.385090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 H 0.048 0.952 4 C 0.035 3.965 5 C -0.527 4.527 6 H 0.059 0.941 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.072 3.928 14 N -0.528 5.528 15 C 0.037 3.963 16 C -0.122 4.122 17 C -0.129 4.129 18 C 0.072 3.928 19 H 0.087 0.913 20 C -0.132 4.132 21 C -0.094 4.094 22 C -0.082 4.082 23 C -0.089 4.089 24 C -0.133 4.133 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.126 4.126 28 C -0.133 4.133 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.036 0.964 32 H -0.017 1.017 33 H -0.010 1.010 34 H 0.262 0.738 35 H 0.069 0.931 36 H 0.020 0.980 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.126 0.874 50 H 0.138 0.862 51 H 0.140 0.860 52 H 0.138 0.862 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.917 -3.914 26.113 26.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.003 4.003 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.056 4.056 14 N -0.252 5.252 15 C -0.090 4.090 16 C -0.160 4.160 17 C -0.167 4.167 18 C -0.036 4.036 19 H 0.105 0.895 20 C -0.170 4.170 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.089 4.089 24 C -0.151 4.151 25 C -0.144 4.144 26 C -0.153 4.153 27 C -0.144 4.144 28 C -0.151 4.151 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.001 0.999 33 H 0.008 0.992 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.038 0.962 37 H 0.049 0.951 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.144 0.856 50 H 0.156 0.844 51 H 0.158 0.842 52 H 0.156 0.844 53 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.435 -3.958 25.961 26.374 hybrid contribution 0.900 -0.035 -1.477 1.730 sum 3.335 -3.993 24.484 25.031 Atomic orbital electron populations 1.21457 0.94791 1.00311 1.00284 1.21044 0.96628 0.98293 0.93323 0.93305 1.18990 0.93856 0.94658 0.92755 1.21618 1.34371 1.08464 0.92080 0.92279 1.25957 0.95304 0.96116 1.02632 1.70100 1.40335 1.22903 1.24256 0.85513 0.79009 0.78401 0.78549 1.19901 1.20835 1.18776 1.22210 0.96561 0.97232 0.89613 1.63707 1.56823 1.03094 1.01554 1.23074 0.96739 0.91499 0.97708 1.22684 1.02348 0.97266 0.93652 1.22840 0.99175 0.94216 1.00514 1.22535 0.97526 0.92812 0.90737 0.89545 1.22147 0.99831 0.96760 0.98283 1.21401 1.00841 0.94344 0.96622 1.20624 1.01328 0.95816 0.94193 1.20046 0.94520 0.97251 0.97061 1.21276 0.96703 1.00508 0.96579 1.21436 1.00316 0.96678 0.95987 1.21461 0.93959 0.99083 1.00823 1.21440 0.97671 0.99656 0.95651 1.21286 0.99633 0.97162 0.96994 0.91742 0.94553 0.94494 0.99873 0.99198 0.92946 0.91294 0.96210 0.95110 0.90982 0.90059 0.89817 0.89197 0.91629 0.92200 0.93012 0.91267 0.91396 0.91330 0.91410 0.85570 0.84401 0.84205 0.84417 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 8.89 71.98 0.64 -3.79 16 2 C -0.07 -3.15 2.27 -10.80 -0.02 -3.18 16 3 H 0.05 2.12 7.14 -2.39 -0.02 2.10 16 4 C 0.03 1.89 4.45 29.85 0.13 2.02 16 5 C -0.53 -30.45 8.41 25.60 0.22 -30.23 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 8 N -0.94 -57.97 13.29 21.45 0.28 -57.68 16 9 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.07 2.56 3.06 86.30 0.26 2.83 16 14 N -0.53 -15.55 4.65 -860.55 -4.00 -19.55 16 15 C 0.04 1.02 5.48 86.78 0.48 1.50 16 16 C -0.12 -2.41 7.08 31.98 0.23 -2.19 16 17 C -0.13 -2.45 5.58 31.77 0.18 -2.28 16 18 C 0.07 1.67 3.49 45.26 0.16 1.83 16 19 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 20 C -0.13 -3.08 3.36 30.59 0.10 -2.98 16 21 C -0.09 -1.76 4.93 30.59 0.15 -1.61 16 22 C -0.08 -1.60 5.35 29.85 0.16 -1.44 16 23 C -0.09 -1.70 5.13 -19.87 -0.10 -1.80 16 24 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 25 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 26 C -0.14 -1.98 10.05 22.27 0.22 -1.76 16 27 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 28 C -0.13 -2.40 9.70 22.27 0.22 -2.18 16 29 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.04 1.56 6.95 -2.39 -0.02 1.54 16 32 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 33 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.07 2.49 6.32 -2.39 -0.02 2.48 16 36 H 0.02 0.74 6.75 -2.38 -0.02 0.73 16 37 H 0.03 0.93 7.71 -2.39 -0.02 0.91 16 38 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 1.27 7.77 -2.39 -0.02 1.25 16 43 H 0.06 1.58 6.29 -2.39 -0.02 1.57 16 44 H 0.05 1.35 6.95 -2.39 -0.02 1.33 16 45 H 0.07 1.21 7.53 -2.39 -0.02 1.19 16 46 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 47 H 0.07 1.39 8.09 -2.38 -0.02 1.37 16 48 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 49 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 50 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 51 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 52 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 53 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -65.79 407.50 3.28 -62.51 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.83 Total: 18.11 kcal Atomic # 6 Polarization: -54.74 SS G_CDS: 4.14 Total: -50.60 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -3.72 Total: -77.23 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.79 3.28 -62.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474311522.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.765 kcal (2) G-P(sol) polarization free energy of solvation -65.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds