Wall clock time and date at job start Tue Mar 31 2020 10:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 109.46897 * 2 1 4 4 C 1.53004 * 109.47144 * 120.00198 * 2 1 3 5 5 C 1.50692 * 109.47278 * 295.00188 * 4 2 1 6 6 H 1.08007 * 120.00057 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00357 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99610 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00154 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47324 * 89.99698 * 9 7 5 11 11 H 1.48497 * 109.47204 * 209.99798 * 9 7 5 12 12 H 1.48506 * 109.46962 * 329.99521 * 9 7 5 13 13 C 1.52997 * 109.46874 * 239.99847 * 2 1 3 14 14 N 1.46903 * 109.47401 * 65.00270 * 13 2 1 15 15 C 1.47848 * 110.99634 * 63.89689 * 14 13 2 16 16 C 1.54902 * 104.79339 * 146.36922 * 15 14 13 17 17 C 1.55134 * 101.65352 * 322.93042 * 16 15 14 18 18 C 1.47437 * 111.00572 * 184.74017 * 14 13 2 19 19 H 1.09003 * 109.88788 * 117.16840 * 18 14 13 20 20 C 1.53001 * 109.88863 * 356.15175 * 18 14 13 21 21 C 1.52999 * 109.47124 * 177.30191 * 20 18 14 22 22 C 1.53006 * 109.47088 * 175.70965 * 21 20 18 23 23 C 1.50688 * 109.47162 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00023 * 90.00068 * 23 22 21 25 25 C 1.38237 * 120.00351 * 180.02562 * 24 23 22 26 26 C 1.38232 * 119.99622 * 359.95903 * 25 24 23 27 27 C 1.38229 * 120.00352 * 0.27778 * 26 25 24 28 28 C 1.38235 * 119.99787 * 359.52805 * 27 26 25 29 29 H 1.09002 * 109.47194 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47078 * 299.99785 * 1 2 3 31 31 H 1.09002 * 109.47110 * 60.00156 * 1 2 3 32 32 H 1.09003 * 109.47075 * 55.00187 * 4 2 1 33 33 H 1.09000 * 109.47236 * 174.99673 * 4 2 1 34 34 H 0.97001 * 119.99487 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47664 * 305.00035 * 13 2 1 36 36 H 1.09007 * 109.47037 * 184.99867 * 13 2 1 37 37 H 1.08999 * 110.37202 * 265.19473 * 15 14 13 38 38 H 1.08992 * 110.37494 * 27.53753 * 15 14 13 39 39 H 1.09009 * 110.99127 * 81.02018 * 16 15 14 40 40 H 1.09000 * 110.99386 * 204.80011 * 16 15 14 41 41 H 1.08999 * 110.70451 * 277.27004 * 17 16 15 42 42 H 1.09002 * 110.70966 * 154.04090 * 17 16 15 43 43 H 1.08995 * 109.47638 * 57.29538 * 20 18 14 44 44 H 1.09003 * 109.46787 * 297.29912 * 20 18 14 45 45 H 1.08996 * 109.47089 * 55.71356 * 21 20 18 46 46 H 1.08995 * 109.46762 * 295.70482 * 21 20 18 47 47 H 1.09007 * 109.46805 * 59.99729 * 22 21 20 48 48 H 1.08999 * 109.47029 * 300.00173 * 22 21 20 49 49 H 1.08006 * 119.99766 * 0.02562 * 24 23 22 50 50 H 1.07999 * 119.99943 * 179.97438 * 25 24 23 51 51 H 1.08007 * 119.99399 * 180.02562 * 26 25 24 52 52 H 1.08000 * 120.00592 * 179.73020 * 27 26 25 53 53 H 1.08005 * 119.99975 * 180.21491 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0806 0.9744 2.3757 7 6 1.9933 -0.4019 3.7283 8 7 2.6765 -1.5189 3.8511 9 14 1.4997 0.5631 5.2496 10 1 0.1725 0.0950 5.7238 11 1 2.5093 0.3532 6.3181 12 1 1.4248 2.0084 4.9163 13 6 2.0399 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.2989 1.3664 -2.4637 16 6 2.5541 1.6617 -3.9628 17 6 2.9311 0.2558 -4.4994 18 6 2.0276 -0.6849 -3.6747 19 1 1.1335 -0.9380 -4.2445 20 6 2.7936 -1.9597 -3.3155 21 6 3.1205 -2.7354 -4.5931 22 6 3.9779 -3.9538 -4.2448 23 6 4.2994 -4.7181 -5.5030 24 6 5.4378 -4.4129 -6.2254 25 6 5.7324 -5.1137 -7.3799 26 6 4.8891 -6.1203 -7.8116 27 6 3.7482 -6.4223 -7.0920 28 6 3.4557 -5.7242 -5.9353 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7199 1.2951 33 1 3.1263 -0.7996 1.2056 34 1 2.9237 -1.8418 4.7317 35 1 1.6053 -1.7199 -1.2952 36 1 3.1263 -0.7995 -1.2056 37 1 1.6349 2.1178 -2.0366 38 1 3.2413 1.3368 -1.9170 39 1 1.6513 2.0350 -4.4464 40 1 3.3797 2.3622 -4.0877 41 1 3.9833 0.0413 -4.3124 42 1 2.7033 0.1750 -5.5623 43 1 2.1810 -2.5795 -2.6608 44 1 3.7192 -1.6954 -2.8040 45 1 3.6682 -2.0901 -5.2799 46 1 2.1949 -3.0654 -5.0646 47 1 3.4302 -4.5991 -3.5579 48 1 4.9036 -3.6238 -3.7731 49 1 6.0970 -3.6268 -5.8877 50 1 6.6216 -4.8748 -7.9445 51 1 5.1196 -6.6681 -8.7135 52 1 3.0870 -7.2058 -7.4316 53 1 2.5660 -5.9625 -5.3711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474311523.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:48 Heat of formation + Delta-G solvation = -5.565335 kcal Electronic energy + Delta-G solvation = -26083.474034 eV Core-core repulsion = 22725.290650 eV Total energy + Delta-G solvation = -3358.183384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.76205 -39.31740 -35.53603 -34.87629 -32.46025 -31.90743 -31.10244 -30.54463 -28.57707 -26.74836 -25.39830 -25.32064 -22.85503 -22.78645 -22.54899 -21.31006 -20.73776 -19.58248 -18.30156 -16.97359 -16.31983 -16.08430 -15.61387 -15.48758 -15.19086 -14.73594 -14.41513 -14.22366 -13.91053 -13.64722 -13.55236 -13.18867 -12.96357 -12.81319 -12.64615 -12.31088 -12.04986 -11.91086 -11.78323 -11.46567 -11.35298 -11.21949 -11.08998 -11.00004 -10.85436 -10.81002 -10.79483 -10.70524 -10.57435 -10.37130 -10.21645 -10.09531 -9.55380 -9.14268 -9.08404 -8.90419 -8.88316 -8.30142 -7.87897 -5.95149 -3.95801 1.14552 1.17901 3.34497 3.40675 3.44039 3.56412 4.23148 4.49761 4.54965 4.61412 4.70494 4.75825 4.81656 4.88539 4.90790 5.01052 5.16218 5.26012 5.29235 5.34169 5.40685 5.47183 5.53169 5.55390 5.68463 5.71341 5.75911 5.79791 5.81997 5.84000 5.90543 5.92581 5.95810 6.05241 6.18538 6.20662 6.25051 6.25870 6.28549 6.29294 6.44120 6.47385 6.49758 6.62173 6.75877 6.79748 7.08964 7.18050 7.25549 7.41756 7.53330 7.73053 7.89559 8.05665 8.50369 9.10625 9.67327 11.16424 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.002457 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.363951 B =11392.379909 C =12657.939838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.510 4.510 6 H 0.055 0.945 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.055 3.945 14 N -0.522 5.522 15 C 0.044 3.956 16 C -0.131 4.131 17 C -0.136 4.136 18 C 0.074 3.926 19 H 0.079 0.921 20 C -0.139 4.139 21 C -0.108 4.108 22 C -0.085 4.085 23 C -0.075 4.075 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.130 4.130 27 C -0.119 4.119 28 C -0.118 4.118 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.041 0.959 32 H 0.015 0.985 33 H 0.011 0.989 34 H 0.259 0.741 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.118 0.882 52 H 0.120 0.880 53 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.607 -4.502 -24.243 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.073 4.073 14 N -0.246 5.246 15 C -0.084 4.084 16 C -0.169 4.169 17 C -0.174 4.174 18 C -0.034 4.034 19 H 0.097 0.903 20 C -0.177 4.177 21 C -0.146 4.146 22 C -0.122 4.122 23 C -0.075 4.075 24 C -0.137 4.137 25 C -0.138 4.138 26 C -0.148 4.148 27 C -0.137 4.137 28 C -0.136 4.136 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.029 0.971 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.136 0.864 52 H 0.138 0.862 53 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.137 -4.552 -24.075 24.701 hybrid contribution 0.738 0.240 0.926 1.208 sum 3.875 -4.312 -23.148 23.863 Atomic orbital electron populations 1.21575 0.95866 1.00435 1.00053 1.21230 0.95899 0.99036 0.93978 0.92823 1.19115 0.95789 0.95529 0.90525 1.21239 1.34401 1.08231 0.90993 0.92630 1.25022 0.95381 0.95131 0.99071 1.69967 1.39172 1.21295 1.23296 0.86642 0.78214 0.80445 0.82991 1.20725 1.21348 1.19940 1.22549 0.97498 0.97558 0.89647 1.63767 1.56549 1.02605 1.01654 1.23016 0.97788 0.92142 0.95420 1.22706 1.01260 0.96678 0.96253 1.22861 0.99671 0.95194 0.99687 1.22422 0.96662 0.92572 0.91774 0.90267 1.22259 1.00921 0.96893 0.97610 1.21535 0.99511 0.95647 0.97875 1.20681 1.00870 0.96578 0.94086 1.19997 0.94603 0.96016 0.96867 1.21087 0.97185 0.99991 0.95443 1.21142 0.99557 0.96339 0.96725 1.21124 0.95301 0.98304 1.00087 1.21150 0.97321 0.99796 0.95441 1.21109 0.99549 0.96142 0.96834 0.94276 0.92901 0.93986 0.96663 0.97070 0.93151 0.91011 0.95134 0.90401 0.93569 0.91041 0.91352 0.91574 0.91378 0.90628 0.91590 0.91921 0.91913 0.90725 0.90913 0.86163 0.86264 0.86362 0.86218 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.71 2.27 -90.62 -0.21 -1.92 16 3 H 0.05 1.14 7.13 -51.94 -0.37 0.77 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 6 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.05 0.95 3.06 -3.82 -0.01 0.94 16 14 N -0.52 -7.84 4.66 -223.36 -1.04 -8.88 16 15 C 0.04 0.62 5.46 -2.30 -0.01 0.61 16 16 C -0.13 -1.45 7.08 -24.60 -0.17 -1.63 16 17 C -0.14 -1.45 5.42 -24.92 -0.14 -1.58 16 18 C 0.07 0.91 3.48 -66.73 -0.23 0.68 16 19 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 20 C -0.14 -1.62 3.36 -26.73 -0.09 -1.71 16 21 C -0.11 -1.05 5.09 -26.73 -0.14 -1.18 16 22 C -0.08 -0.82 5.34 -27.89 -0.15 -0.97 16 23 C -0.07 -0.73 5.13 -104.63 -0.54 -1.27 16 24 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 25 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 26 C -0.13 -1.07 10.05 -39.59 -0.40 -1.47 16 27 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 28 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 31 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.07 1.26 6.33 -51.93 -0.33 0.93 16 36 H 0.03 0.55 6.75 -51.93 -0.35 0.20 16 37 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 38 H 0.05 0.69 7.71 -51.93 -0.40 0.29 16 39 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.71 7.79 -51.93 -0.40 0.30 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.97 6.28 -51.93 -0.33 0.65 16 44 H 0.07 0.84 6.95 -51.93 -0.36 0.48 16 45 H 0.06 0.59 7.26 -51.93 -0.38 0.22 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.73 8.09 -51.92 -0.42 0.31 16 48 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 49 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 50 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 51 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 52 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 53 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 407.21 15.07 6.14 6.14 Total: -1.00 -30.26 407.21 -12.96 -43.21 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -9.94 Total: -0.87 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -3.83 Total: -30.05 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.30 Total: -35.30 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.26 -12.96 -43.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474311523.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.649 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds