Wall clock time and date at job start Tue Mar 31 2020 10:45:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08989 * 109.46897 * 2 1
4 4 C 1.53004 * 109.47144 * 120.00198 * 2 1 3
5 5 C 1.50692 * 109.47278 * 295.00188 * 4 2 1
6 6 H 1.08007 * 120.00057 * 359.97438 * 5 4 2
7 7 C 1.37880 * 120.00357 * 180.02562 * 5 4 2
8 8 N 1.31513 * 119.99610 * 359.97438 * 7 5 4
9 9 Si 1.86797 * 120.00154 * 179.97438 * 7 5 4
10 10 H 1.48501 * 109.47324 * 89.99698 * 9 7 5
11 11 H 1.48497 * 109.47204 * 209.99798 * 9 7 5
12 12 H 1.48506 * 109.46962 * 329.99521 * 9 7 5
13 13 C 1.52997 * 109.46874 * 239.99847 * 2 1 3
14 14 N 1.46903 * 109.47401 * 65.00270 * 13 2 1
15 15 C 1.47848 * 110.99634 * 63.89689 * 14 13 2
16 16 C 1.54902 * 104.79339 * 146.36922 * 15 14 13
17 17 C 1.55134 * 101.65352 * 322.93042 * 16 15 14
18 18 C 1.47437 * 111.00572 * 184.74017 * 14 13 2
19 19 H 1.09003 * 109.88788 * 117.16840 * 18 14 13
20 20 C 1.53001 * 109.88863 * 356.15175 * 18 14 13
21 21 C 1.52999 * 109.47124 * 177.30191 * 20 18 14
22 22 C 1.53006 * 109.47088 * 175.70965 * 21 20 18
23 23 C 1.50688 * 109.47162 * 179.97438 * 22 21 20
24 24 C 1.38234 * 120.00023 * 90.00068 * 23 22 21
25 25 C 1.38237 * 120.00351 * 180.02562 * 24 23 22
26 26 C 1.38232 * 119.99622 * 359.95903 * 25 24 23
27 27 C 1.38229 * 120.00352 * 0.27778 * 26 25 24
28 28 C 1.38235 * 119.99787 * 359.52805 * 27 26 25
29 29 H 1.09002 * 109.47194 * 179.97438 * 1 2 3
30 30 H 1.08998 * 109.47078 * 299.99785 * 1 2 3
31 31 H 1.09002 * 109.47110 * 60.00156 * 1 2 3
32 32 H 1.09003 * 109.47075 * 55.00187 * 4 2 1
33 33 H 1.09000 * 109.47236 * 174.99673 * 4 2 1
34 34 H 0.97001 * 119.99487 * 180.02562 * 8 7 5
35 35 H 1.09003 * 109.47664 * 305.00035 * 13 2 1
36 36 H 1.09007 * 109.47037 * 184.99867 * 13 2 1
37 37 H 1.08999 * 110.37202 * 265.19473 * 15 14 13
38 38 H 1.08992 * 110.37494 * 27.53753 * 15 14 13
39 39 H 1.09009 * 110.99127 * 81.02018 * 16 15 14
40 40 H 1.09000 * 110.99386 * 204.80011 * 16 15 14
41 41 H 1.08999 * 110.70451 * 277.27004 * 17 16 15
42 42 H 1.09002 * 110.70966 * 154.04090 * 17 16 15
43 43 H 1.08995 * 109.47638 * 57.29538 * 20 18 14
44 44 H 1.09003 * 109.46787 * 297.29912 * 20 18 14
45 45 H 1.08996 * 109.47089 * 55.71356 * 21 20 18
46 46 H 1.08995 * 109.46762 * 295.70482 * 21 20 18
47 47 H 1.09007 * 109.46805 * 59.99729 * 22 21 20
48 48 H 1.08999 * 109.47029 * 300.00173 * 22 21 20
49 49 H 1.08006 * 119.99766 * 0.02562 * 24 23 22
50 50 H 1.07999 * 119.99943 * 179.97438 * 25 24 23
51 51 H 1.08007 * 119.99399 * 180.02562 * 26 25 24
52 52 H 1.08000 * 120.00592 * 179.73020 * 27 26 25
53 53 H 1.08005 * 119.99975 * 180.21491 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.6414 0.0569 2.4766
6 1 1.0806 0.9744 2.3757
7 6 1.9933 -0.4019 3.7283
8 7 2.6765 -1.5189 3.8511
9 14 1.4997 0.5631 5.2496
10 1 0.1725 0.0950 5.7238
11 1 2.5093 0.3532 6.3181
12 1 1.4248 2.0084 4.9163
13 6 2.0399 -0.7213 -1.2492
14 7 1.6514 0.0374 -2.4457
15 6 2.2989 1.3664 -2.4637
16 6 2.5541 1.6617 -3.9628
17 6 2.9311 0.2558 -4.4994
18 6 2.0276 -0.6849 -3.6747
19 1 1.1335 -0.9380 -4.2445
20 6 2.7936 -1.9597 -3.3155
21 6 3.1205 -2.7354 -4.5931
22 6 3.9779 -3.9538 -4.2448
23 6 4.2994 -4.7181 -5.5030
24 6 5.4378 -4.4129 -6.2254
25 6 5.7324 -5.1137 -7.3799
26 6 4.8891 -6.1203 -7.8116
27 6 3.7482 -6.4223 -7.0920
28 6 3.4557 -5.7242 -5.9353
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.6054 -1.7199 1.2951
33 1 3.1263 -0.7996 1.2056
34 1 2.9237 -1.8418 4.7317
35 1 1.6053 -1.7199 -1.2952
36 1 3.1263 -0.7995 -1.2056
37 1 1.6349 2.1178 -2.0366
38 1 3.2413 1.3368 -1.9170
39 1 1.6513 2.0350 -4.4464
40 1 3.3797 2.3622 -4.0877
41 1 3.9833 0.0413 -4.3124
42 1 2.7033 0.1750 -5.5623
43 1 2.1810 -2.5795 -2.6608
44 1 3.7192 -1.6954 -2.8040
45 1 3.6682 -2.0901 -5.2799
46 1 2.1949 -3.0654 -5.0646
47 1 3.4302 -4.5991 -3.5579
48 1 4.9036 -3.6238 -3.7731
49 1 6.0970 -3.6268 -5.8877
50 1 6.6216 -4.8748 -7.9445
51 1 5.1196 -6.6681 -8.7135
52 1 3.0870 -7.2058 -7.4316
53 1 2.5660 -5.9625 -5.3711
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001474311523.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:45:47
Heat of formation + Delta-G solvation = -18.744316 kcal
Electronic energy + Delta-G solvation = -26084.045517 eV
Core-core repulsion = 22725.290650 eV
Total energy + Delta-G solvation = -3358.754867 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 315.226 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.78654 -40.08455 -37.08156 -35.88845 -34.45189 -32.75735 -31.92095 -31.74149
-29.45739 -28.73622 -26.87253 -26.25612 -24.73777 -23.43812 -23.40125 -22.34241
-21.55204 -20.91875 -19.73143 -18.45447 -17.60161 -17.15064 -16.69490 -16.41588
-16.34689 -15.95186 -15.83015 -15.45854 -15.01594 -14.51266 -14.39758 -14.36314
-14.22275 -14.11983 -13.78180 -13.57420 -13.34371 -13.22107 -12.96442 -12.74454
-12.70471 -12.63631 -12.37675 -12.20528 -12.12898 -12.00147 -11.94726 -11.90023
-11.67023 -11.59951 -11.52870 -11.49058 -11.19097 -11.00161 -10.86455 -10.53655
-9.79921 -9.57180 -9.10129 -8.17804 -6.26795 0.47898 0.52188 1.39153
1.40339 1.51204 2.41437 2.89744 3.09606 3.15391 3.66645 3.76124
3.86514 3.93836 3.98115 4.18518 4.18856 4.19780 4.26534 4.30843
4.36081 4.48120 4.49739 4.55436 4.58415 4.62738 4.67773 4.71750
4.79051 4.84645 4.91514 4.92621 4.95433 5.00751 5.05117 5.08002
5.10037 5.17416 5.20428 5.23876 5.28717 5.34273 5.38710 5.45097
5.49019 5.51973 5.57145 5.60871 5.65055 5.77668 5.80648 5.88889
6.15889 6.17319 6.22423 6.34017 6.88850 7.41228 8.94284
Molecular weight = 315.23amu
Principal moments of inertia in cm(-1)
A = 0.014840 B = 0.002457 C = 0.002212
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1886.363951 B =11392.379909 C =12657.939838
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C -0.074 4.074
3 H 0.049 0.951
4 C 0.035 3.965
5 C -0.527 4.527
6 H 0.059 0.941
7 C -0.003 4.003
8 N -0.935 5.935
9 Si 0.961 3.039
10 H -0.273 1.273
11 H -0.283 1.283
12 H -0.264 1.264
13 C 0.072 3.928
14 N -0.528 5.528
15 C 0.038 3.962
16 C -0.122 4.122
17 C -0.129 4.129
18 C 0.072 3.928
19 H 0.086 0.914
20 C -0.132 4.132
21 C -0.095 4.095
22 C -0.082 4.082
23 C -0.089 4.089
24 C -0.132 4.132
25 C -0.126 4.126
26 C -0.135 4.135
27 C -0.127 4.127
28 C -0.133 4.133
29 H 0.035 0.965
30 H 0.037 0.963
31 H 0.064 0.936
32 H -0.011 1.011
33 H -0.017 1.017
34 H 0.262 0.738
35 H 0.068 0.932
36 H 0.020 0.980
37 H 0.072 0.928
38 H 0.031 0.969
39 H 0.081 0.919
40 H 0.083 0.917
41 H 0.065 0.935
42 H 0.090 0.910
43 H 0.059 0.941
44 H 0.052 0.948
45 H 0.071 0.929
46 H 0.066 0.934
47 H 0.067 0.933
48 H 0.068 0.932
49 H 0.127 0.873
50 H 0.139 0.861
51 H 0.140 0.860
52 H 0.138 0.862
53 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.268 -3.685 -26.141 26.601
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.093 4.093
3 H 0.067 0.933
4 C -0.003 4.003
5 C -0.565 4.565
6 H 0.077 0.923
7 C -0.200 4.200
8 N -0.576 5.576
9 Si 0.785 3.215
10 H -0.198 1.198
11 H -0.209 1.209
12 H -0.188 1.188
13 C -0.056 4.056
14 N -0.252 5.252
15 C -0.090 4.090
16 C -0.159 4.159
17 C -0.167 4.167
18 C -0.036 4.036
19 H 0.104 0.896
20 C -0.170 4.170
21 C -0.133 4.133
22 C -0.119 4.119
23 C -0.089 4.089
24 C -0.150 4.150
25 C -0.144 4.144
26 C -0.153 4.153
27 C -0.144 4.144
28 C -0.151 4.151
29 H 0.054 0.946
30 H 0.056 0.944
31 H 0.082 0.918
32 H 0.008 0.992
33 H 0.001 0.999
34 H 0.071 0.929
35 H 0.087 0.913
36 H 0.038 0.962
37 H 0.090 0.910
38 H 0.049 0.951
39 H 0.099 0.901
40 H 0.102 0.898
41 H 0.084 0.916
42 H 0.108 0.892
43 H 0.077 0.923
44 H 0.070 0.930
45 H 0.089 0.911
46 H 0.085 0.915
47 H 0.086 0.914
48 H 0.087 0.913
49 H 0.145 0.855
50 H 0.156 0.844
51 H 0.158 0.842
52 H 0.155 0.845
53 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges 2.791 -3.727 -25.992 26.405
hybrid contribution 0.865 -0.058 1.483 1.718
sum 3.656 -3.785 -24.509 25.067
Atomic orbital electron populations
1.21460 0.94783 1.00311 1.00307 1.21046 0.96640 0.98290 0.93323
0.93302 1.18989 0.93865 0.94646 0.92756 1.21617 1.34328 1.08507
0.92081 0.92278 1.25957 0.95272 0.96150 1.02637 1.70104 1.40281
1.22963 1.24245 0.85511 0.78045 0.79264 0.78636 1.19833 1.20856
1.18821 1.22212 0.96573 0.97218 0.89611 1.63710 1.56884 1.03045
1.01549 1.23069 0.96790 0.91436 0.97719 1.22681 1.02337 0.97275
0.93654 1.22836 0.99180 0.94180 1.00521 1.22520 0.97497 0.92831
0.90772 0.89586 1.22150 0.99828 0.96779 0.98277 1.21414 0.99739
0.95424 0.96717 1.20619 1.00551 0.96524 0.94240 1.20044 0.95285
0.96576 0.96975 1.21278 0.97228 1.00562 0.95926 1.21440 1.00276
0.96138 0.96542 1.21459 0.94947 0.98205 1.00714 1.21435 0.97843
1.00041 0.95119 1.21288 0.99892 0.96451 0.97513 0.94565 0.94437
0.91752 0.99220 0.99857 0.92948 0.91327 0.96189 0.90995 0.95103
0.90072 0.89800 0.91579 0.89181 0.92271 0.92961 0.91060 0.91544
0.91442 0.91321 0.85480 0.84357 0.84207 0.84460 0.85643
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.43 8.89 71.98 0.64 -3.79 16
2 C -0.07 -3.16 2.27 -10.79 -0.02 -3.18 16
3 H 0.05 2.12 7.13 -2.39 -0.02 2.10 16
4 C 0.04 1.89 4.45 29.85 0.13 2.02 16
5 C -0.53 -30.45 8.41 25.60 0.22 -30.23 16
6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16
7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16
8 N -0.94 -57.97 13.29 21.45 0.28 -57.68 16
9 Si 0.96 45.18 29.54 68.60 2.03 47.21 16
10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16
11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16
12 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16
13 C 0.07 2.57 3.06 86.30 0.26 2.83 16
14 N -0.53 -15.56 4.66 -860.57 -4.01 -19.57 16
15 C 0.04 1.03 5.46 86.77 0.47 1.50 16
16 C -0.12 -2.41 7.08 31.98 0.23 -2.18 16
17 C -0.13 -2.44 5.42 31.77 0.17 -2.27 16
18 C 0.07 1.67 3.48 45.26 0.16 1.83 16
19 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16
20 C -0.13 -3.09 3.36 30.59 0.10 -2.99 16
21 C -0.09 -1.78 5.09 30.60 0.16 -1.62 16
22 C -0.08 -1.59 5.34 29.85 0.16 -1.43 16
23 C -0.09 -1.70 5.13 -19.87 -0.10 -1.80 16
24 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16
25 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16
26 C -0.14 -1.98 10.05 22.27 0.22 -1.76 16
27 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16
28 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16
29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
30 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16
31 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16
32 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16
33 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16
34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16
35 H 0.07 2.48 6.33 -2.39 -0.02 2.47 16
36 H 0.02 0.75 6.75 -2.38 -0.02 0.73 16
37 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16
38 H 0.03 0.93 7.71 -2.39 -0.02 0.91 16
39 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16
40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
41 H 0.07 1.27 7.79 -2.39 -0.02 1.26 16
42 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16
43 H 0.06 1.57 6.28 -2.39 -0.02 1.55 16
44 H 0.05 1.36 6.95 -2.39 -0.02 1.34 16
45 H 0.07 1.23 7.26 -2.39 -0.02 1.21 16
46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
47 H 0.07 1.38 8.09 -2.38 -0.02 1.36 16
48 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16
49 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16
50 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16
51 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16
52 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16
53 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16
Total: -1.00 -65.80 407.21 3.27 -62.53
By element:
Atomic # 1 Polarization: 17.27 SS G_CDS: 0.83 Total: 18.10 kcal
Atomic # 6 Polarization: -54.73 SS G_CDS: 4.14 Total: -50.59 kcal
Atomic # 7 Polarization: -73.53 SS G_CDS: -3.72 Total: -77.25 kcal
Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal
Total: -65.80 3.27 -62.53 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001474311523.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.787 kcal
(2) G-P(sol) polarization free energy of solvation -65.805 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.017 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.532 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.744 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds