Wall clock time and date at job start Tue Mar 31 2020 10:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 109.46897 * 2 1 4 4 C 1.53004 * 109.47144 * 120.00198 * 2 1 3 5 5 C 1.50692 * 109.47278 * 295.00188 * 4 2 1 6 6 H 1.08007 * 120.00057 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00357 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99610 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00154 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47324 * 89.99698 * 9 7 5 11 11 H 1.48497 * 109.47204 * 209.99798 * 9 7 5 12 12 H 1.48506 * 109.46962 * 329.99521 * 9 7 5 13 13 C 1.52997 * 109.46874 * 239.99847 * 2 1 3 14 14 N 1.46903 * 109.47401 * 65.00270 * 13 2 1 15 15 C 1.47848 * 110.99634 * 63.89689 * 14 13 2 16 16 C 1.54902 * 104.79339 * 146.36922 * 15 14 13 17 17 C 1.55134 * 101.65352 * 322.93042 * 16 15 14 18 18 C 1.47437 * 111.00572 * 184.74017 * 14 13 2 19 19 H 1.09003 * 109.88788 * 117.16840 * 18 14 13 20 20 C 1.53001 * 109.88863 * 356.15175 * 18 14 13 21 21 C 1.52999 * 109.47124 * 177.30191 * 20 18 14 22 22 C 1.53006 * 109.47088 * 175.70965 * 21 20 18 23 23 C 1.50688 * 109.47162 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00023 * 90.00068 * 23 22 21 25 25 C 1.38237 * 120.00351 * 180.02562 * 24 23 22 26 26 C 1.38232 * 119.99622 * 359.95903 * 25 24 23 27 27 C 1.38229 * 120.00352 * 0.27778 * 26 25 24 28 28 C 1.38235 * 119.99787 * 359.52805 * 27 26 25 29 29 H 1.09002 * 109.47194 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47078 * 299.99785 * 1 2 3 31 31 H 1.09002 * 109.47110 * 60.00156 * 1 2 3 32 32 H 1.09003 * 109.47075 * 55.00187 * 4 2 1 33 33 H 1.09000 * 109.47236 * 174.99673 * 4 2 1 34 34 H 0.97001 * 119.99487 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47664 * 305.00035 * 13 2 1 36 36 H 1.09007 * 109.47037 * 184.99867 * 13 2 1 37 37 H 1.08999 * 110.37202 * 265.19473 * 15 14 13 38 38 H 1.08992 * 110.37494 * 27.53753 * 15 14 13 39 39 H 1.09009 * 110.99127 * 81.02018 * 16 15 14 40 40 H 1.09000 * 110.99386 * 204.80011 * 16 15 14 41 41 H 1.08999 * 110.70451 * 277.27004 * 17 16 15 42 42 H 1.09002 * 110.70966 * 154.04090 * 17 16 15 43 43 H 1.08995 * 109.47638 * 57.29538 * 20 18 14 44 44 H 1.09003 * 109.46787 * 297.29912 * 20 18 14 45 45 H 1.08996 * 109.47089 * 55.71356 * 21 20 18 46 46 H 1.08995 * 109.46762 * 295.70482 * 21 20 18 47 47 H 1.09007 * 109.46805 * 59.99729 * 22 21 20 48 48 H 1.08999 * 109.47029 * 300.00173 * 22 21 20 49 49 H 1.08006 * 119.99766 * 0.02562 * 24 23 22 50 50 H 1.07999 * 119.99943 * 179.97438 * 25 24 23 51 51 H 1.08007 * 119.99399 * 180.02562 * 26 25 24 52 52 H 1.08000 * 120.00592 * 179.73020 * 27 26 25 53 53 H 1.08005 * 119.99975 * 180.21491 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0806 0.9744 2.3757 7 6 1.9933 -0.4019 3.7283 8 7 2.6765 -1.5189 3.8511 9 14 1.4997 0.5631 5.2496 10 1 0.1725 0.0950 5.7238 11 1 2.5093 0.3532 6.3181 12 1 1.4248 2.0084 4.9163 13 6 2.0399 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.2989 1.3664 -2.4637 16 6 2.5541 1.6617 -3.9628 17 6 2.9311 0.2558 -4.4994 18 6 2.0276 -0.6849 -3.6747 19 1 1.1335 -0.9380 -4.2445 20 6 2.7936 -1.9597 -3.3155 21 6 3.1205 -2.7354 -4.5931 22 6 3.9779 -3.9538 -4.2448 23 6 4.2994 -4.7181 -5.5030 24 6 5.4378 -4.4129 -6.2254 25 6 5.7324 -5.1137 -7.3799 26 6 4.8891 -6.1203 -7.8116 27 6 3.7482 -6.4223 -7.0920 28 6 3.4557 -5.7242 -5.9353 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7199 1.2951 33 1 3.1263 -0.7996 1.2056 34 1 2.9237 -1.8418 4.7317 35 1 1.6053 -1.7199 -1.2952 36 1 3.1263 -0.7995 -1.2056 37 1 1.6349 2.1178 -2.0366 38 1 3.2413 1.3368 -1.9170 39 1 1.6513 2.0350 -4.4464 40 1 3.3797 2.3622 -4.0877 41 1 3.9833 0.0413 -4.3124 42 1 2.7033 0.1750 -5.5623 43 1 2.1810 -2.5795 -2.6608 44 1 3.7192 -1.6954 -2.8040 45 1 3.6682 -2.0901 -5.2799 46 1 2.1949 -3.0654 -5.0646 47 1 3.4302 -4.5991 -3.5579 48 1 4.9036 -3.6238 -3.7731 49 1 6.0970 -3.6268 -5.8877 50 1 6.6216 -4.8748 -7.9445 51 1 5.1196 -6.6681 -8.7135 52 1 3.0870 -7.2058 -7.4316 53 1 2.5660 -5.9625 -5.3711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474311523.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:47 Heat of formation + Delta-G solvation = -18.744316 kcal Electronic energy + Delta-G solvation = -26084.045517 eV Core-core repulsion = 22725.290650 eV Total energy + Delta-G solvation = -3358.754867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.78654 -40.08455 -37.08156 -35.88845 -34.45189 -32.75735 -31.92095 -31.74149 -29.45739 -28.73622 -26.87253 -26.25612 -24.73777 -23.43812 -23.40125 -22.34241 -21.55204 -20.91875 -19.73143 -18.45447 -17.60161 -17.15064 -16.69490 -16.41588 -16.34689 -15.95186 -15.83015 -15.45854 -15.01594 -14.51266 -14.39758 -14.36314 -14.22275 -14.11983 -13.78180 -13.57420 -13.34371 -13.22107 -12.96442 -12.74454 -12.70471 -12.63631 -12.37675 -12.20528 -12.12898 -12.00147 -11.94726 -11.90023 -11.67023 -11.59951 -11.52870 -11.49058 -11.19097 -11.00161 -10.86455 -10.53655 -9.79921 -9.57180 -9.10129 -8.17804 -6.26795 0.47898 0.52188 1.39153 1.40339 1.51204 2.41437 2.89744 3.09606 3.15391 3.66645 3.76124 3.86514 3.93836 3.98115 4.18518 4.18856 4.19780 4.26534 4.30843 4.36081 4.48120 4.49739 4.55436 4.58415 4.62738 4.67773 4.71750 4.79051 4.84645 4.91514 4.92621 4.95433 5.00751 5.05117 5.08002 5.10037 5.17416 5.20428 5.23876 5.28717 5.34273 5.38710 5.45097 5.49019 5.51973 5.57145 5.60871 5.65055 5.77668 5.80648 5.88889 6.15889 6.17319 6.22423 6.34017 6.88850 7.41228 8.94284 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.002457 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.363951 B =11392.379909 C =12657.939838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 H 0.049 0.951 4 C 0.035 3.965 5 C -0.527 4.527 6 H 0.059 0.941 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.072 3.928 14 N -0.528 5.528 15 C 0.038 3.962 16 C -0.122 4.122 17 C -0.129 4.129 18 C 0.072 3.928 19 H 0.086 0.914 20 C -0.132 4.132 21 C -0.095 4.095 22 C -0.082 4.082 23 C -0.089 4.089 24 C -0.132 4.132 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.127 4.127 28 C -0.133 4.133 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.064 0.936 32 H -0.011 1.011 33 H -0.017 1.017 34 H 0.262 0.738 35 H 0.068 0.932 36 H 0.020 0.980 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.127 0.873 50 H 0.139 0.861 51 H 0.140 0.860 52 H 0.138 0.862 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 -3.685 -26.141 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.003 4.003 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.056 4.056 14 N -0.252 5.252 15 C -0.090 4.090 16 C -0.159 4.159 17 C -0.167 4.167 18 C -0.036 4.036 19 H 0.104 0.896 20 C -0.170 4.170 21 C -0.133 4.133 22 C -0.119 4.119 23 C -0.089 4.089 24 C -0.150 4.150 25 C -0.144 4.144 26 C -0.153 4.153 27 C -0.144 4.144 28 C -0.151 4.151 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.008 0.992 33 H 0.001 0.999 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.145 0.855 50 H 0.156 0.844 51 H 0.158 0.842 52 H 0.155 0.845 53 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.791 -3.727 -25.992 26.405 hybrid contribution 0.865 -0.058 1.483 1.718 sum 3.656 -3.785 -24.509 25.067 Atomic orbital electron populations 1.21460 0.94783 1.00311 1.00307 1.21046 0.96640 0.98290 0.93323 0.93302 1.18989 0.93865 0.94646 0.92756 1.21617 1.34328 1.08507 0.92081 0.92278 1.25957 0.95272 0.96150 1.02637 1.70104 1.40281 1.22963 1.24245 0.85511 0.78045 0.79264 0.78636 1.19833 1.20856 1.18821 1.22212 0.96573 0.97218 0.89611 1.63710 1.56884 1.03045 1.01549 1.23069 0.96790 0.91436 0.97719 1.22681 1.02337 0.97275 0.93654 1.22836 0.99180 0.94180 1.00521 1.22520 0.97497 0.92831 0.90772 0.89586 1.22150 0.99828 0.96779 0.98277 1.21414 0.99739 0.95424 0.96717 1.20619 1.00551 0.96524 0.94240 1.20044 0.95285 0.96576 0.96975 1.21278 0.97228 1.00562 0.95926 1.21440 1.00276 0.96138 0.96542 1.21459 0.94947 0.98205 1.00714 1.21435 0.97843 1.00041 0.95119 1.21288 0.99892 0.96451 0.97513 0.94565 0.94437 0.91752 0.99220 0.99857 0.92948 0.91327 0.96189 0.90995 0.95103 0.90072 0.89800 0.91579 0.89181 0.92271 0.92961 0.91060 0.91544 0.91442 0.91321 0.85480 0.84357 0.84207 0.84460 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 8.89 71.98 0.64 -3.79 16 2 C -0.07 -3.16 2.27 -10.79 -0.02 -3.18 16 3 H 0.05 2.12 7.13 -2.39 -0.02 2.10 16 4 C 0.04 1.89 4.45 29.85 0.13 2.02 16 5 C -0.53 -30.45 8.41 25.60 0.22 -30.23 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 8 N -0.94 -57.97 13.29 21.45 0.28 -57.68 16 9 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 13 C 0.07 2.57 3.06 86.30 0.26 2.83 16 14 N -0.53 -15.56 4.66 -860.57 -4.01 -19.57 16 15 C 0.04 1.03 5.46 86.77 0.47 1.50 16 16 C -0.12 -2.41 7.08 31.98 0.23 -2.18 16 17 C -0.13 -2.44 5.42 31.77 0.17 -2.27 16 18 C 0.07 1.67 3.48 45.26 0.16 1.83 16 19 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 20 C -0.13 -3.09 3.36 30.59 0.10 -2.99 16 21 C -0.09 -1.78 5.09 30.60 0.16 -1.62 16 22 C -0.08 -1.59 5.34 29.85 0.16 -1.43 16 23 C -0.09 -1.70 5.13 -19.87 -0.10 -1.80 16 24 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 25 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 26 C -0.14 -1.98 10.05 22.27 0.22 -1.76 16 27 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 28 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 31 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16 32 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.07 2.48 6.33 -2.39 -0.02 2.47 16 36 H 0.02 0.75 6.75 -2.38 -0.02 0.73 16 37 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 38 H 0.03 0.93 7.71 -2.39 -0.02 0.91 16 39 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.27 7.79 -2.39 -0.02 1.26 16 42 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 1.57 6.28 -2.39 -0.02 1.55 16 44 H 0.05 1.36 6.95 -2.39 -0.02 1.34 16 45 H 0.07 1.23 7.26 -2.39 -0.02 1.21 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.07 1.38 8.09 -2.38 -0.02 1.36 16 48 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 49 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 50 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 51 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 52 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 53 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -65.80 407.21 3.27 -62.53 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.83 Total: 18.10 kcal Atomic # 6 Polarization: -54.73 SS G_CDS: 4.14 Total: -50.59 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -3.72 Total: -77.25 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.80 3.27 -62.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474311523.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.787 kcal (2) G-P(sol) polarization free energy of solvation -65.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds