Wall clock time and date at job start Tue Mar 31 2020 10:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09010 * 109.47062 * 2 1 4 4 C 1.52996 * 109.47167 * 240.00495 * 2 1 3 5 5 C 1.50695 * 109.47654 * 65.65545 * 4 2 1 6 6 H 1.08000 * 120.00018 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00438 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00106 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46712 * 120.00326 * 9 7 5 12 12 H 1.48497 * 109.47388 * 240.00484 * 9 7 5 13 13 C 1.53001 * 109.47645 * 119.99888 * 2 1 3 14 14 N 1.46899 * 109.47308 * 185.52907 * 13 2 1 15 15 C 1.46908 * 110.99901 * 64.55182 * 14 13 2 16 16 C 1.46900 * 110.99915 * 188.50344 * 14 13 2 17 17 H 1.08994 * 109.47090 * 319.93522 * 16 14 13 18 18 C 1.53004 * 109.46818 * 199.93432 * 16 14 13 19 19 C 1.53000 * 109.47207 * 299.99919 * 18 16 14 20 20 C 1.53002 * 109.47127 * 300.00115 * 19 18 16 21 21 C 1.53005 * 109.46908 * 60.00145 * 20 19 18 22 22 C 1.52995 * 109.46959 * 79.93525 * 16 14 13 23 23 H 1.08998 * 109.47381 * 179.97438 * 22 16 14 24 24 C 1.50701 * 109.47125 * 299.99799 * 22 16 14 25 25 C 1.38234 * 119.99969 * 281.03170 * 24 22 16 26 26 C 1.38237 * 120.00042 * 179.97438 * 25 24 22 27 27 C 1.38231 * 119.99683 * 0.02562 * 26 25 24 28 28 C 1.38237 * 120.00142 * 0.25508 * 27 26 25 29 29 C 1.38234 * 119.99663 * 101.05796 * 24 22 16 30 30 H 1.09001 * 109.46906 * 304.69773 * 1 2 3 31 31 H 1.08997 * 109.47396 * 64.70078 * 1 2 3 32 32 H 1.09001 * 109.46745 * 184.70669 * 1 2 3 33 33 H 1.09001 * 109.47331 * 185.66117 * 4 2 1 34 34 H 1.09008 * 109.47033 * 305.65843 * 4 2 1 35 35 H 0.96998 * 120.00245 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46925 * 65.53469 * 13 2 1 37 37 H 1.09001 * 109.46930 * 305.53297 * 13 2 1 38 38 H 1.08998 * 109.47059 * 178.84713 * 15 14 13 39 39 H 1.09003 * 109.47032 * 298.84400 * 15 14 13 40 40 H 1.09001 * 109.47065 * 58.84289 * 15 14 13 41 41 H 1.08999 * 109.46663 * 180.02562 * 18 16 14 42 42 H 1.09001 * 109.47120 * 60.00203 * 18 16 14 43 43 H 1.08997 * 109.47053 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.47235 * 60.00441 * 19 18 16 45 45 H 1.08999 * 109.47330 * 300.00268 * 20 19 18 46 46 H 1.09006 * 109.46771 * 179.97438 * 20 19 18 47 47 H 1.09001 * 109.46857 * 179.97438 * 21 20 19 48 48 H 1.08999 * 109.47024 * 59.99936 * 21 20 19 49 49 H 1.08000 * 119.99761 * 0.02562 * 25 24 22 50 50 H 1.07994 * 120.00020 * 180.02562 * 26 25 24 51 51 H 1.08001 * 120.00175 * 179.97438 * 27 26 25 52 52 H 1.08009 * 119.99780 * 179.72591 * 28 27 26 53 53 H 1.07998 * 120.00717 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6553 0.0655 -2.4757 6 1 1.1026 0.9878 -2.3743 7 6 2.0097 -0.3917 -3.7273 8 7 2.6831 -1.5146 -3.8508 9 14 1.5322 0.5831 -5.2475 10 1 0.7840 1.7996 -4.8407 11 1 2.7578 0.9801 -5.9860 12 1 0.6756 -0.2552 -6.1243 13 6 2.0401 -0.7212 1.2492 14 7 3.5030 -0.6067 1.3177 15 6 3.9139 0.7929 1.4924 16 6 4.0477 -1.4527 2.3880 17 1 3.3962 -1.3997 3.2601 18 6 5.4463 -0.9602 2.7654 19 6 6.3608 -1.0346 1.5410 20 6 6.4442 -2.4827 1.0540 21 6 5.0456 -2.9751 0.6765 22 6 4.1311 -2.9007 1.9009 23 1 4.5357 -3.5284 2.6948 24 6 2.7535 -3.3857 1.5291 25 6 1.8712 -3.7837 2.5160 26 6 0.6074 -4.2281 2.1751 27 6 0.2262 -4.2750 0.8472 28 6 1.1106 -3.8824 -0.1401 29 6 2.3725 -3.4330 0.2012 30 1 -0.3633 0.5850 0.8449 31 1 -0.3634 0.4391 -0.9291 32 1 -0.3633 -1.0242 0.0843 33 1 3.1252 -0.8098 -1.2001 34 1 1.5962 -1.7154 -1.3015 35 1 2.9321 -1.8364 -4.7313 36 1 1.7599 -1.7735 1.2011 37 1 1.5981 -0.2677 2.1364 38 1 5.0004 0.8468 1.5606 39 1 3.5737 1.3806 0.6397 40 1 3.4723 1.1898 2.4065 41 1 5.8506 -1.5883 3.5592 42 1 5.3869 0.0714 3.1124 43 1 7.3573 -0.6842 1.8100 44 1 5.9567 -0.4069 0.7469 45 1 6.8484 -3.1104 1.8481 46 1 7.0954 -2.5355 0.1814 47 1 5.1051 -4.0065 0.3291 48 1 4.6414 -2.3473 -0.1176 49 1 2.1690 -3.7467 3.5535 50 1 -0.0820 -4.5387 2.9461 51 1 -0.7610 -4.6226 0.5807 52 1 0.8142 -3.9233 -1.1779 53 1 3.0618 -3.1221 -0.5699 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560887535.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:23 Heat of formation + Delta-G solvation = 19.957704 kcal Electronic energy + Delta-G solvation = -29357.119397 eV Core-core repulsion = 26000.042775 eV Total energy + Delta-G solvation = -3357.076621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.46962 -38.02220 -36.12702 -33.70211 -32.64967 -31.88494 -30.48863 -29.36195 -28.36631 -27.01915 -26.26766 -24.07979 -23.23645 -22.56971 -22.13635 -20.82184 -20.44407 -18.68946 -18.60442 -16.58938 -16.29251 -15.42774 -15.37082 -14.94214 -14.52865 -14.43212 -14.12307 -13.99777 -13.53319 -13.39591 -13.07214 -12.84534 -12.56046 -12.28977 -12.24307 -11.95896 -11.88369 -11.76954 -11.74060 -11.38859 -11.22170 -10.93715 -10.84074 -10.77305 -10.73983 -10.69397 -10.43275 -10.25864 -10.12877 -9.90700 -9.84283 -9.71420 -9.49192 -8.96290 -8.78861 -8.36351 -8.17534 -7.97287 -7.56036 -5.86537 -3.84545 1.80655 1.90556 3.36322 3.44574 3.48127 4.24946 4.37797 4.56384 4.83550 5.01149 5.10991 5.27290 5.37328 5.44280 5.49577 5.50672 5.58141 5.59054 5.66805 5.72388 5.77179 5.79728 5.82920 5.93188 5.95845 6.00057 6.01326 6.09998 6.16278 6.20419 6.24620 6.37108 6.38497 6.41443 6.46574 6.50563 6.56138 6.57136 6.61938 6.64151 6.72284 6.90670 6.93305 7.10036 7.11602 7.16830 7.20752 7.42267 7.50067 7.68520 7.73960 7.92134 8.16747 8.25188 8.63791 9.22827 9.76868 11.24239 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.005842 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.028259 B = 4791.783317 C = 5682.640769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 H 0.050 0.950 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.049 0.951 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.879 3.121 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.287 1.287 13 C 0.036 3.964 14 N -0.511 5.511 15 C 0.014 3.986 16 C 0.094 3.906 17 H 0.034 0.966 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.033 4.033 23 H 0.071 0.929 24 C -0.071 4.071 25 C -0.135 4.135 26 C -0.130 4.130 27 C -0.131 4.131 28 C -0.108 4.108 29 C -0.082 4.082 30 H 0.024 0.976 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.030 0.970 34 H 0.023 0.977 35 H 0.255 0.745 36 H 0.103 0.897 37 H 0.005 0.995 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.010 0.990 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.053 0.947 48 H 0.095 0.905 49 H 0.110 0.890 50 H 0.111 0.889 51 H 0.113 0.887 52 H 0.124 0.876 53 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -3.781 14.317 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.068 0.932 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.067 0.933 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.708 3.292 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.213 1.213 13 C -0.091 4.091 14 N -0.235 5.235 15 C -0.134 4.134 16 C -0.015 4.015 17 H 0.052 0.948 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.052 4.052 23 H 0.089 0.911 24 C -0.071 4.071 25 C -0.154 4.154 26 C -0.148 4.148 27 C -0.149 4.149 28 C -0.126 4.126 29 C -0.100 4.100 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.023 0.977 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.029 0.971 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.114 0.886 49 H 0.128 0.872 50 H 0.129 0.871 51 H 0.131 0.869 52 H 0.142 0.858 53 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.586 -4.053 13.750 14.776 hybrid contribution -0.798 0.960 -0.103 1.253 sum 2.787 -3.094 13.647 14.268 Atomic orbital electron populations 1.21703 0.96916 1.00233 1.00224 1.21218 0.93925 0.98993 0.96025 0.93211 1.19168 0.97050 0.95200 0.88806 1.21406 1.34285 1.07570 0.91616 0.93299 1.24919 0.95617 0.95075 0.98566 1.69951 1.39700 1.20903 1.22788 0.86742 0.78115 0.80322 0.84003 1.20076 1.21309 1.21328 1.22960 0.85803 1.03728 0.96598 1.61894 1.11059 1.06994 1.43555 1.22638 1.00985 0.89979 0.99800 1.21563 0.94788 0.93040 0.92113 0.94763 1.21749 0.94978 1.00802 0.98071 1.21580 0.98004 0.97768 0.98226 1.21445 0.97364 0.95962 1.00123 1.21608 0.93920 1.01063 0.98361 1.20091 0.92043 0.94707 0.98309 0.91084 1.19733 0.95602 0.98202 0.93572 1.20858 0.94304 1.01781 0.98412 1.20925 0.96252 1.01492 0.96106 1.21077 0.99396 1.01328 0.93078 1.21280 0.93914 0.97724 0.99695 1.21425 0.96802 0.95705 0.96064 0.95709 0.91853 0.93841 0.95184 0.95881 0.93479 0.87919 0.97731 0.90946 0.90763 0.97104 0.92199 0.91842 0.93148 0.89939 0.93205 0.92252 0.92782 0.88611 0.87240 0.87112 0.86925 0.85794 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.08 37.15 0.34 -2.28 16 2 C -0.08 -1.71 2.23 -90.62 -0.20 -1.91 16 3 H 0.05 1.06 6.28 -51.92 -0.33 0.74 16 4 C 0.03 0.84 3.34 -27.89 -0.09 0.75 16 5 C -0.51 -13.99 8.34 -34.44 -0.29 -14.28 16 6 H 0.05 1.34 7.12 -52.49 -0.37 0.97 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 9 Si 0.88 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.04 0.64 3.61 -3.82 -0.01 0.63 16 14 N -0.51 -8.29 2.75 -234.88 -0.65 -8.94 16 15 C 0.01 0.21 7.83 60.07 0.47 0.68 16 16 C 0.09 1.30 2.15 -67.71 -0.15 1.16 16 17 H 0.03 0.49 7.94 -51.93 -0.41 0.08 16 18 C -0.12 -1.41 4.86 -26.73 -0.13 -1.54 16 19 C -0.12 -1.47 5.28 -26.73 -0.14 -1.62 16 20 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 21 C -0.11 -1.65 3.99 -26.73 -0.11 -1.76 16 22 C -0.03 -0.45 2.19 -91.77 -0.20 -0.65 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 C -0.07 -1.09 2.98 -104.62 -0.31 -1.40 16 25 C -0.14 -1.91 9.23 -39.58 -0.37 -2.28 16 26 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 27 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 28 C -0.11 -1.87 8.83 -39.58 -0.35 -2.22 16 29 C -0.08 -1.44 5.35 -39.58 -0.21 -1.65 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.33 6.88 -51.93 -0.36 0.98 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.79 7.62 -51.93 -0.40 0.39 16 34 H 0.02 0.58 5.40 -51.92 -0.28 0.30 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 36 H 0.10 1.85 2.60 -51.93 -0.14 1.71 16 37 H 0.00 0.08 8.13 -51.93 -0.42 -0.34 16 38 H 0.07 0.98 4.40 -51.93 -0.23 0.76 16 39 H 0.07 1.27 6.37 -51.93 -0.33 0.94 16 40 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.73 6.38 -51.93 -0.33 0.39 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 1.20 6.06 -51.93 -0.31 0.89 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.10 1.73 6.18 -51.93 -0.32 1.41 16 49 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 50 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 51 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 52 H 0.12 2.26 8.05 -52.48 -0.42 1.84 16 53 H 0.14 2.83 5.31 -52.49 -0.28 2.55 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -28.08 378.14 -11.17 -39.25 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -9.14 Total: 5.37 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: -2.80 Total: -32.95 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.09 Total: -33.99 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.08 -11.17 -39.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560887535.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.211 kcal (2) G-P(sol) polarization free energy of solvation -28.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds