Wall clock time and date at job start Tue Mar 31 2020 10:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09010 * 109.47062 * 2 1 4 4 C 1.52996 * 109.47167 * 240.00495 * 2 1 3 5 5 C 1.50695 * 109.47654 * 65.65545 * 4 2 1 6 6 H 1.08000 * 120.00018 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00438 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00106 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46712 * 120.00326 * 9 7 5 12 12 H 1.48497 * 109.47388 * 240.00484 * 9 7 5 13 13 C 1.53001 * 109.47645 * 119.99888 * 2 1 3 14 14 N 1.46899 * 109.47308 * 185.52907 * 13 2 1 15 15 C 1.46908 * 110.99901 * 64.55182 * 14 13 2 16 16 C 1.46900 * 110.99915 * 188.50344 * 14 13 2 17 17 H 1.08994 * 109.47090 * 319.93522 * 16 14 13 18 18 C 1.53004 * 109.46818 * 199.93432 * 16 14 13 19 19 C 1.53000 * 109.47207 * 299.99919 * 18 16 14 20 20 C 1.53002 * 109.47127 * 300.00115 * 19 18 16 21 21 C 1.53005 * 109.46908 * 60.00145 * 20 19 18 22 22 C 1.52995 * 109.46959 * 79.93525 * 16 14 13 23 23 H 1.08998 * 109.47381 * 179.97438 * 22 16 14 24 24 C 1.50701 * 109.47125 * 299.99799 * 22 16 14 25 25 C 1.38234 * 119.99969 * 281.03170 * 24 22 16 26 26 C 1.38237 * 120.00042 * 179.97438 * 25 24 22 27 27 C 1.38231 * 119.99683 * 0.02562 * 26 25 24 28 28 C 1.38237 * 120.00142 * 0.25508 * 27 26 25 29 29 C 1.38234 * 119.99663 * 101.05796 * 24 22 16 30 30 H 1.09001 * 109.46906 * 304.69773 * 1 2 3 31 31 H 1.08997 * 109.47396 * 64.70078 * 1 2 3 32 32 H 1.09001 * 109.46745 * 184.70669 * 1 2 3 33 33 H 1.09001 * 109.47331 * 185.66117 * 4 2 1 34 34 H 1.09008 * 109.47033 * 305.65843 * 4 2 1 35 35 H 0.96998 * 120.00245 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46925 * 65.53469 * 13 2 1 37 37 H 1.09001 * 109.46930 * 305.53297 * 13 2 1 38 38 H 1.08998 * 109.47059 * 178.84713 * 15 14 13 39 39 H 1.09003 * 109.47032 * 298.84400 * 15 14 13 40 40 H 1.09001 * 109.47065 * 58.84289 * 15 14 13 41 41 H 1.08999 * 109.46663 * 180.02562 * 18 16 14 42 42 H 1.09001 * 109.47120 * 60.00203 * 18 16 14 43 43 H 1.08997 * 109.47053 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.47235 * 60.00441 * 19 18 16 45 45 H 1.08999 * 109.47330 * 300.00268 * 20 19 18 46 46 H 1.09006 * 109.46771 * 179.97438 * 20 19 18 47 47 H 1.09001 * 109.46857 * 179.97438 * 21 20 19 48 48 H 1.08999 * 109.47024 * 59.99936 * 21 20 19 49 49 H 1.08000 * 119.99761 * 0.02562 * 25 24 22 50 50 H 1.07994 * 120.00020 * 180.02562 * 26 25 24 51 51 H 1.08001 * 120.00175 * 179.97438 * 27 26 25 52 52 H 1.08009 * 119.99780 * 179.72591 * 28 27 26 53 53 H 1.07998 * 120.00717 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6553 0.0655 -2.4757 6 1 1.1026 0.9878 -2.3743 7 6 2.0097 -0.3917 -3.7273 8 7 2.6831 -1.5146 -3.8508 9 14 1.5322 0.5831 -5.2475 10 1 0.7840 1.7996 -4.8407 11 1 2.7578 0.9801 -5.9860 12 1 0.6756 -0.2552 -6.1243 13 6 2.0401 -0.7212 1.2492 14 7 3.5030 -0.6067 1.3177 15 6 3.9139 0.7929 1.4924 16 6 4.0477 -1.4527 2.3880 17 1 3.3962 -1.3997 3.2601 18 6 5.4463 -0.9602 2.7654 19 6 6.3608 -1.0346 1.5410 20 6 6.4442 -2.4827 1.0540 21 6 5.0456 -2.9751 0.6765 22 6 4.1311 -2.9007 1.9009 23 1 4.5357 -3.5284 2.6948 24 6 2.7535 -3.3857 1.5291 25 6 1.8712 -3.7837 2.5160 26 6 0.6074 -4.2281 2.1751 27 6 0.2262 -4.2750 0.8472 28 6 1.1106 -3.8824 -0.1401 29 6 2.3725 -3.4330 0.2012 30 1 -0.3633 0.5850 0.8449 31 1 -0.3634 0.4391 -0.9291 32 1 -0.3633 -1.0242 0.0843 33 1 3.1252 -0.8098 -1.2001 34 1 1.5962 -1.7154 -1.3015 35 1 2.9321 -1.8364 -4.7313 36 1 1.7599 -1.7735 1.2011 37 1 1.5981 -0.2677 2.1364 38 1 5.0004 0.8468 1.5606 39 1 3.5737 1.3806 0.6397 40 1 3.4723 1.1898 2.4065 41 1 5.8506 -1.5883 3.5592 42 1 5.3869 0.0714 3.1124 43 1 7.3573 -0.6842 1.8100 44 1 5.9567 -0.4069 0.7469 45 1 6.8484 -3.1104 1.8481 46 1 7.0954 -2.5355 0.1814 47 1 5.1051 -4.0065 0.3291 48 1 4.6414 -2.3473 -0.1176 49 1 2.1690 -3.7467 3.5535 50 1 -0.0820 -4.5387 2.9461 51 1 -0.7610 -4.6226 0.5807 52 1 0.8142 -3.9233 -1.1779 53 1 3.0618 -3.1221 -0.5699 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560887535.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:22 Heat of formation + Delta-G solvation = 8.349223 kcal Electronic energy + Delta-G solvation = -29357.622778 eV Core-core repulsion = 26000.042775 eV Total energy + Delta-G solvation = -3357.580003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65991 -39.18901 -37.62036 -35.32348 -33.95110 -33.63250 -31.71498 -30.52222 -29.52312 -28.95780 -27.66204 -25.63228 -24.57948 -24.05941 -23.42669 -21.97720 -21.58905 -20.35950 -19.73045 -18.41621 -17.74377 -16.76172 -16.56519 -16.48817 -16.11119 -15.65663 -15.44780 -15.24248 -14.95717 -14.65138 -14.43761 -14.24098 -14.03169 -13.77446 -13.55468 -13.32056 -13.29237 -12.99549 -12.96516 -12.93837 -12.73164 -12.71837 -12.51191 -12.22978 -12.02786 -11.98689 -11.91817 -11.73356 -11.58394 -11.28116 -11.12478 -11.00419 -10.85360 -10.74022 -10.67240 -10.38354 -9.57483 -9.25013 -8.79396 -8.05247 -6.10450 0.60618 0.69041 1.37317 1.39198 1.49868 2.46485 3.03784 3.16457 3.27454 3.75696 3.93697 4.02759 4.21328 4.23088 4.28358 4.32563 4.39218 4.43528 4.47135 4.50752 4.54950 4.62535 4.64460 4.68743 4.75083 4.76662 4.80628 4.84072 4.87966 4.96463 5.00316 5.05693 5.06974 5.13925 5.22631 5.27848 5.33243 5.37462 5.44417 5.45925 5.47424 5.50642 5.53955 5.58628 5.72453 5.73399 5.78395 5.88163 5.96760 6.14118 6.16456 6.28236 6.42687 6.49278 6.52378 7.08128 7.54315 9.04699 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.005842 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.028259 B = 4791.783317 C = 5682.640769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.078 4.078 3 H 0.038 0.962 4 C 0.055 3.945 5 C -0.528 4.528 6 H 0.044 0.956 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.045 3.955 14 N -0.528 5.528 15 C 0.018 3.982 16 C 0.094 3.906 17 H 0.044 0.956 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.108 4.108 21 C -0.107 4.107 22 C -0.030 4.030 23 H 0.099 0.901 24 C -0.072 4.072 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.133 4.133 28 C -0.132 4.132 29 C -0.097 4.097 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.000 1.000 34 H 0.009 0.991 35 H 0.256 0.744 36 H 0.104 0.896 37 H 0.013 0.987 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.024 0.976 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.051 0.949 49 H 0.141 0.859 50 H 0.146 0.854 51 H 0.130 0.870 52 H 0.095 0.905 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 -3.765 17.664 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 H 0.057 0.943 4 C 0.018 3.982 5 C -0.566 4.566 6 H 0.062 0.938 7 C -0.190 4.190 8 N -0.563 5.563 9 Si 0.769 3.231 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.208 1.208 13 C -0.082 4.082 14 N -0.252 5.252 15 C -0.129 4.129 16 C -0.014 4.014 17 H 0.062 0.938 18 C -0.149 4.149 19 C -0.154 4.154 20 C -0.145 4.145 21 C -0.144 4.144 22 C -0.048 4.048 23 H 0.117 0.883 24 C -0.072 4.072 25 C -0.149 4.149 26 C -0.140 4.140 27 C -0.151 4.151 28 C -0.150 4.150 29 C -0.115 4.115 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.031 0.969 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.159 0.841 50 H 0.163 0.837 51 H 0.148 0.852 52 H 0.113 0.887 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.586 -4.027 17.099 17.929 hybrid contribution -0.787 0.919 -1.177 1.688 sum 2.799 -3.108 15.922 16.462 Atomic orbital electron populations 1.21612 0.96034 1.00460 1.00317 1.21091 0.94664 0.98115 0.95859 0.94324 1.18865 0.94969 0.94517 0.89836 1.21800 1.34050 1.07633 0.93126 0.93769 1.25681 0.95706 0.96052 1.01558 1.70091 1.40604 1.22244 1.23368 0.85749 0.77879 0.79102 0.80392 1.19404 1.20900 1.20804 1.22765 0.87143 1.03258 0.94998 1.61801 1.09976 1.07893 1.45532 1.22583 1.02033 0.89230 0.99081 1.21652 0.96160 0.92296 0.91309 0.93848 1.21738 0.93236 1.01847 0.98127 1.21534 0.99194 0.96850 0.97780 1.21429 0.95729 0.96715 1.00657 1.21471 0.95492 0.99670 0.97814 1.20156 0.91002 0.95398 0.98277 0.88301 1.19874 0.96735 0.97984 0.92655 1.21215 0.93921 1.00326 0.99439 1.21314 0.96735 0.99940 0.96021 1.21266 0.99622 1.00894 0.93332 1.21172 0.94872 0.99844 0.99159 1.21102 0.96367 0.97434 0.96589 0.92931 0.93898 0.93936 0.98146 0.97294 0.93502 0.87853 0.96922 0.89323 0.93614 0.95723 0.89551 0.90977 0.91096 0.92938 0.90649 0.93102 0.93567 0.93063 0.84083 0.83666 0.85183 0.88657 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 9.08 71.98 0.65 -4.36 16 2 C -0.08 -3.34 2.23 -10.80 -0.02 -3.36 16 3 H 0.04 1.71 6.28 -2.38 -0.01 1.70 16 4 C 0.06 2.85 3.34 29.84 0.10 2.95 16 5 C -0.53 -30.33 8.34 25.60 0.21 -30.11 16 6 H 0.04 2.52 7.12 -2.91 -0.02 2.50 16 7 C 0.01 0.43 5.46 84.65 0.46 0.90 16 8 N -0.92 -56.05 13.29 21.45 0.28 -55.77 16 9 Si 0.94 45.73 29.54 68.60 2.03 47.76 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 13 C 0.05 1.62 3.61 86.30 0.31 1.93 16 14 N -0.53 -17.10 2.75 -897.03 -2.47 -19.57 16 15 C 0.02 0.56 7.83 127.69 1.00 1.56 16 16 C 0.09 2.40 2.15 44.92 0.10 2.50 16 17 H 0.04 1.07 7.94 -2.39 -0.02 1.05 16 18 C -0.11 -2.29 4.86 30.60 0.15 -2.14 16 19 C -0.12 -2.71 5.28 30.59 0.16 -2.55 16 20 C -0.11 -2.64 5.92 30.60 0.18 -2.46 16 21 C -0.11 -3.23 3.99 30.60 0.12 -3.11 16 22 C -0.03 -0.78 2.19 -11.54 -0.03 -0.80 16 23 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 24 C -0.07 -2.16 2.98 -19.87 -0.06 -2.22 16 25 C -0.13 -3.29 9.23 22.27 0.21 -3.08 16 26 C -0.12 -3.02 10.05 22.27 0.22 -2.80 16 27 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 28 C -0.13 -4.85 8.83 22.27 0.20 -4.65 16 29 C -0.10 -3.60 5.35 22.27 0.12 -3.48 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.84 6.88 -2.39 -0.02 1.82 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.00 0.01 7.62 -2.39 -0.02 -0.01 16 34 H 0.01 0.48 5.40 -2.38 -0.01 0.47 16 35 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.10 3.72 2.60 -2.39 -0.01 3.71 16 37 H 0.01 0.43 8.13 -2.39 -0.02 0.41 16 38 H 0.09 2.35 4.40 -2.39 -0.01 2.34 16 39 H 0.05 1.62 6.37 -2.39 -0.02 1.60 16 40 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.39 6.38 -2.39 -0.02 1.37 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.55 6.06 -2.39 -0.01 1.53 16 45 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 47 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.05 2.03 6.18 -2.39 -0.01 2.01 16 49 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 50 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 51 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 52 H 0.10 3.90 8.05 -2.91 -0.02 3.88 16 53 H 0.10 4.59 5.31 -2.91 -0.02 4.57 16 Total: -1.00 -64.56 378.14 5.02 -59.54 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.87 Total: 27.02 kcal Atomic # 6 Polarization: -63.29 SS G_CDS: 4.31 Total: -58.97 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -2.19 Total: -75.34 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -64.56 5.02 -59.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560887535.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.886 kcal (2) G-P(sol) polarization free energy of solvation -64.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds