Wall clock time and date at job start Tue Mar 31 2020 10:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47364 * 2 1 4 4 N 1.46907 * 109.46967 * 175.46152 * 3 2 1 5 5 C 1.46896 * 111.00179 * 69.33524 * 4 3 2 6 6 C 1.53005 * 109.46694 * 87.33051 * 5 4 3 7 7 H 1.08995 * 109.47201 * 53.70871 * 6 5 4 8 8 C 1.52997 * 109.47345 * 293.70314 * 6 5 4 9 9 C 1.53002 * 109.46486 * 173.70588 * 6 5 4 10 10 C 1.50699 * 109.46924 * 184.99882 * 9 6 5 11 11 H 1.08002 * 120.00289 * 0.02562 * 10 9 6 12 12 C 1.37871 * 120.00360 * 179.97438 * 10 9 6 13 13 N 1.31518 * 119.99862 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00495 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47189 * 89.99700 * 14 12 10 16 16 H 1.48495 * 109.47144 * 210.00383 * 14 12 10 17 17 H 1.48508 * 109.46846 * 330.00085 * 14 12 10 18 18 C 1.46904 * 110.99850 * 305.37917 * 4 3 2 19 19 H 1.08999 * 109.67714 * 68.51235 * 18 4 3 20 20 C 1.53328 * 109.68285 * 307.99804 * 18 4 3 21 21 C 1.52736 * 108.38365 * 170.40793 * 20 18 4 22 22 C 1.50630 * 110.59274 * 51.09924 * 21 20 18 23 23 C 1.38903 * 117.75630 * 162.27268 * 22 21 20 24 24 C 1.37932 * 120.54525 * 179.76316 * 23 22 21 25 25 C 1.38268 * 119.77470 * 359.96079 * 24 23 22 26 26 C 1.37928 * 119.76769 * 0.11568 * 25 24 23 27 27 C 1.37661 * 122.56198 * 342.22409 * 22 21 20 28 28 C 1.50643 * 122.56504 * 0.72551 * 27 22 21 29 29 H 1.08998 * 109.47240 * 300.00932 * 1 2 3 30 30 H 1.09011 * 109.46675 * 60.00453 * 1 2 3 31 31 H 1.08995 * 109.47716 * 180.02562 * 1 2 3 32 32 H 1.09011 * 109.46675 * 119.99547 * 2 1 3 33 33 H 1.08998 * 109.47240 * 239.99068 * 2 1 3 34 34 H 1.08999 * 109.46697 * 295.45876 * 3 2 1 35 35 H 1.08996 * 109.47025 * 55.46011 * 3 2 1 36 36 H 1.08993 * 109.47139 * 207.32918 * 5 4 3 37 37 H 1.09003 * 109.47242 * 327.33295 * 5 4 3 38 38 H 1.09001 * 109.47307 * 312.80252 * 8 6 5 39 39 H 1.09002 * 109.46541 * 72.79718 * 8 6 5 40 40 H 1.08991 * 109.47222 * 192.79426 * 8 6 5 41 41 H 1.08994 * 109.47584 * 305.00129 * 9 6 5 42 42 H 1.09004 * 109.47331 * 65.00217 * 9 6 5 43 43 H 0.97002 * 119.99984 * 180.02562 * 13 12 10 44 44 H 1.09000 * 109.67425 * 290.12941 * 20 18 4 45 45 H 1.08993 * 109.68426 * 50.68298 * 20 18 4 46 46 H 1.09002 * 109.24935 * 171.38059 * 21 20 18 47 47 H 1.09000 * 109.25017 * 290.84744 * 21 20 18 48 48 H 1.07999 * 119.73253 * 359.73628 * 23 22 21 49 49 H 1.08006 * 120.11394 * 179.97438 * 24 23 22 50 50 H 1.08002 * 120.11863 * 180.14384 * 25 24 23 51 51 H 1.07997 * 119.73009 * 180.02562 * 26 25 24 52 52 H 1.08998 * 109.25637 * 221.93035 * 28 27 22 53 53 H 1.09004 * 109.24365 * 102.50031 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4438 0.1096 5 6 4.1252 0.9267 -1.1175 6 6 4.3190 2.0724 -2.1128 7 1 4.8706 2.8810 -1.6333 8 6 2.9528 2.5878 -2.5696 9 6 5.1048 1.5676 -3.3247 10 6 5.4021 2.7218 -4.2469 11 1 5.0646 3.7160 -3.9938 12 6 6.1057 2.5088 -5.4133 13 7 6.5171 1.2982 -5.7213 14 14 6.4748 3.9396 -6.5561 15 1 7.7730 4.5534 -6.1776 16 1 6.5485 3.4490 -7.9557 17 1 5.3961 4.9541 -6.4434 18 6 3.9457 0.6800 1.2845 19 1 3.7379 -0.3792 1.1328 20 6 3.2054 1.1779 2.5316 21 6 3.4999 0.2175 3.6821 22 6 4.9835 -0.0018 3.8226 23 6 5.4490 -0.5289 5.0205 24 6 6.7960 -0.7577 5.2093 25 6 7.6912 -0.4609 4.1982 26 6 7.2312 0.0641 3.0086 27 6 5.8753 0.2981 2.8177 28 6 5.4438 0.8855 1.4993 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 0.8901 33 1 1.8933 -0.5140 -0.8899 34 1 1.7446 1.9322 -0.9279 35 1 1.6118 1.9792 0.8465 36 1 5.0929 0.4862 -0.8777 37 1 3.4796 0.1673 -1.5588 38 1 2.3175 1.7439 -2.8389 39 1 2.4870 3.1492 -1.7597 40 1 3.0804 3.2374 -3.4354 41 1 6.0404 1.1196 -2.9902 42 1 4.5140 0.8212 -3.8557 43 1 7.0124 1.1484 -6.5418 44 1 3.5533 2.1781 2.7900 45 1 2.1332 1.2004 2.3375 46 1 3.1093 0.6369 4.6092 47 1 3.0129 -0.7378 3.4864 48 1 4.7505 -0.7612 5.8107 49 1 7.1503 -1.1674 6.1437 50 1 8.7469 -0.6399 4.3392 51 1 7.9309 0.2953 2.2191 52 1 5.9926 0.3998 0.6925 53 1 5.6649 1.9529 1.4920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621146349.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:15 Heat of formation + Delta-G solvation = 0.828684 kcal Electronic energy + Delta-G solvation = -27192.297981 eV Core-core repulsion = 23834.391863 eV Total energy + Delta-G solvation = -3357.906118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.37197 -38.62957 -35.58929 -34.38069 -32.98751 -32.26109 -31.52850 -29.64781 -28.51752 -26.81223 -26.74970 -24.24672 -23.63165 -22.58413 -22.31337 -22.12136 -20.53171 -18.89264 -18.76421 -16.68895 -16.28581 -15.99501 -15.83699 -15.00402 -14.78349 -14.63458 -14.40272 -14.09446 -13.94862 -13.69036 -13.35297 -13.31026 -12.97884 -12.59161 -12.56162 -12.38079 -12.04937 -11.99282 -11.71792 -11.59593 -11.50207 -11.42898 -11.30313 -11.17344 -10.98889 -10.79608 -10.73194 -10.67161 -10.44689 -10.23888 -10.05060 -9.92074 -9.58701 -9.02005 -8.93384 -8.80847 -8.57327 -8.29584 -7.86745 -5.94585 -3.95244 1.30671 1.32425 3.34981 3.41270 3.44543 3.69039 4.07958 4.50673 4.53727 4.74786 4.88308 4.90918 4.98502 5.00245 5.07861 5.10628 5.15450 5.32026 5.35558 5.41219 5.44955 5.49489 5.53878 5.60862 5.66475 5.74109 5.84704 5.86285 5.89508 5.94141 5.95843 5.96668 5.99422 6.06015 6.13361 6.21047 6.24995 6.30639 6.35515 6.43028 6.45338 6.48730 6.58107 6.66423 6.67063 6.96545 7.04523 7.22993 7.25372 7.45498 7.53085 7.74745 7.91704 8.06543 8.50951 9.11406 9.67942 11.16916 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.003380 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.673039 B = 8281.163924 C =10044.554583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.166 4.166 3 C 0.037 3.963 4 N -0.528 5.528 5 C 0.053 3.947 6 C -0.075 4.075 7 H 0.062 0.938 8 C -0.135 4.135 9 C 0.028 3.972 10 C -0.510 4.510 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.888 3.112 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.087 3.913 19 H 0.043 0.957 20 C -0.116 4.116 21 C -0.078 4.078 22 C -0.079 4.079 23 C -0.123 4.123 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.065 4.065 28 C -0.078 4.078 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.259 0.741 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.122 0.878 52 H 0.078 0.922 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.754 -4.354 21.380 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.205 4.205 3 C -0.090 4.090 4 N -0.250 5.250 5 C -0.074 4.074 6 C -0.094 4.094 7 H 0.081 0.919 8 C -0.192 4.192 9 C -0.010 4.010 10 C -0.549 4.549 11 H 0.074 0.926 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.022 4.022 19 H 0.061 0.939 20 C -0.154 4.154 21 C -0.116 4.116 22 C -0.079 4.079 23 C -0.141 4.141 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.065 4.065 28 C -0.115 4.115 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.140 0.860 52 H 0.096 0.904 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.499 -3.953 21.297 22.615 hybrid contribution 0.171 -0.289 -0.790 0.858 sum -6.329 -4.243 20.507 21.877 Atomic orbital electron populations 1.21667 0.95782 1.01246 1.01665 1.22237 0.96339 0.99768 1.02144 1.22675 0.87717 0.95067 1.03575 1.62271 1.06573 1.53544 1.02602 1.22460 0.98135 0.97335 0.89465 1.21140 0.96442 0.96205 0.95609 0.91907 1.21899 0.96848 1.00100 1.00384 1.19113 0.94418 0.96320 0.91143 1.21243 1.34215 0.94614 1.04782 0.92562 1.25016 0.96089 0.95428 0.98020 1.69970 1.38594 1.20267 1.24909 0.86653 0.78699 0.82821 0.80179 1.20757 1.21380 1.19912 1.21533 0.94257 0.95697 0.90696 0.93910 1.21719 1.00652 0.99391 0.93603 1.20470 0.91788 0.99997 0.99300 1.19642 0.95473 0.99263 0.93542 1.21113 0.95696 1.00253 0.97022 1.21017 0.93472 1.01106 0.99037 1.21055 0.99526 0.99768 0.93797 1.21232 0.95169 0.99529 0.97774 1.19700 0.93009 0.98264 0.95538 1.20588 0.95611 1.02000 0.93307 0.92997 0.92613 0.93196 0.92031 0.91751 0.88775 0.91176 0.91683 0.94451 0.94540 0.94035 0.91914 0.96914 0.96910 0.93167 0.90963 0.90849 0.90832 0.90978 0.86502 0.86428 0.86264 0.85952 0.90352 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.17 -1.93 5.07 -26.73 -0.14 -2.07 16 3 C 0.04 0.47 4.36 -3.82 -0.02 0.46 16 4 N -0.53 -7.53 4.42 -226.61 -1.00 -8.53 16 5 C 0.05 0.90 4.36 -3.82 -0.02 0.89 16 6 C -0.07 -1.52 2.54 -90.62 -0.23 -1.75 16 7 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 8 C -0.14 -2.54 7.59 37.16 0.28 -2.26 16 9 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 10 C -0.51 -14.26 8.22 -34.44 -0.28 -14.55 16 11 H 0.06 1.54 7.15 -52.49 -0.38 1.16 16 12 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 14 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.09 1.09 1.23 -67.68 -0.08 1.01 16 19 H 0.04 0.57 6.61 -51.93 -0.34 0.23 16 20 C -0.12 -1.23 4.78 -26.70 -0.13 -1.36 16 21 C -0.08 -0.75 5.67 -28.05 -0.16 -0.91 16 22 C -0.08 -0.89 5.74 -104.62 -0.60 -1.49 16 23 C -0.12 -1.25 9.61 -39.45 -0.38 -1.62 16 24 C -0.13 -1.26 10.05 -39.68 -0.40 -1.66 16 25 C -0.12 -1.29 10.05 -39.68 -0.40 -1.69 16 26 C -0.12 -1.40 9.61 -39.44 -0.38 -1.78 16 27 C -0.06 -0.80 5.74 -104.61 -0.60 -1.40 16 28 C -0.08 -1.02 4.76 -28.05 -0.13 -1.15 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.70 5.81 -51.92 -0.30 0.40 16 33 H 0.06 0.86 6.55 -51.93 -0.34 0.52 16 34 H 0.09 1.30 4.23 -51.93 -0.22 1.08 16 35 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 36 H 0.06 1.14 5.88 -51.93 -0.31 0.83 16 37 H 0.04 0.65 6.01 -51.93 -0.31 0.34 16 38 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 39 H 0.04 0.69 6.40 -51.93 -0.33 0.35 16 40 H 0.06 1.31 6.68 -51.93 -0.35 0.96 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 45 H 0.07 0.73 5.53 -51.93 -0.29 0.44 16 46 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.12 0.94 8.05 -52.49 -0.42 0.52 16 49 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 50 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 51 H 0.12 1.34 8.05 -52.49 -0.42 0.92 16 52 H 0.08 1.10 6.51 -51.93 -0.34 0.76 16 53 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -29.64 391.02 -12.19 -41.83 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -9.28 Total: 0.71 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: -3.51 Total: -30.35 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.26 Total: -34.84 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.64 -12.19 -41.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621146349.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.654 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds