Wall clock time and date at job start Tue Mar 31 2020 10:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47364 * 2 1 4 4 N 1.46907 * 109.46967 * 175.46152 * 3 2 1 5 5 C 1.46896 * 111.00179 * 69.33524 * 4 3 2 6 6 C 1.53005 * 109.46694 * 87.33051 * 5 4 3 7 7 H 1.08995 * 109.47201 * 53.70871 * 6 5 4 8 8 C 1.52997 * 109.47345 * 293.70314 * 6 5 4 9 9 C 1.53002 * 109.46486 * 173.70588 * 6 5 4 10 10 C 1.50699 * 109.46924 * 184.99882 * 9 6 5 11 11 H 1.08002 * 120.00289 * 0.02562 * 10 9 6 12 12 C 1.37871 * 120.00360 * 179.97438 * 10 9 6 13 13 N 1.31518 * 119.99862 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00495 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47189 * 89.99700 * 14 12 10 16 16 H 1.48495 * 109.47144 * 210.00383 * 14 12 10 17 17 H 1.48508 * 109.46846 * 330.00085 * 14 12 10 18 18 C 1.46904 * 110.99850 * 305.37917 * 4 3 2 19 19 H 1.08999 * 109.67714 * 68.51235 * 18 4 3 20 20 C 1.53328 * 109.68285 * 307.99804 * 18 4 3 21 21 C 1.52736 * 108.38365 * 170.40793 * 20 18 4 22 22 C 1.50630 * 110.59274 * 51.09924 * 21 20 18 23 23 C 1.38903 * 117.75630 * 162.27268 * 22 21 20 24 24 C 1.37932 * 120.54525 * 179.76316 * 23 22 21 25 25 C 1.38268 * 119.77470 * 359.96079 * 24 23 22 26 26 C 1.37928 * 119.76769 * 0.11568 * 25 24 23 27 27 C 1.37661 * 122.56198 * 342.22409 * 22 21 20 28 28 C 1.50643 * 122.56504 * 0.72551 * 27 22 21 29 29 H 1.08998 * 109.47240 * 300.00932 * 1 2 3 30 30 H 1.09011 * 109.46675 * 60.00453 * 1 2 3 31 31 H 1.08995 * 109.47716 * 180.02562 * 1 2 3 32 32 H 1.09011 * 109.46675 * 119.99547 * 2 1 3 33 33 H 1.08998 * 109.47240 * 239.99068 * 2 1 3 34 34 H 1.08999 * 109.46697 * 295.45876 * 3 2 1 35 35 H 1.08996 * 109.47025 * 55.46011 * 3 2 1 36 36 H 1.08993 * 109.47139 * 207.32918 * 5 4 3 37 37 H 1.09003 * 109.47242 * 327.33295 * 5 4 3 38 38 H 1.09001 * 109.47307 * 312.80252 * 8 6 5 39 39 H 1.09002 * 109.46541 * 72.79718 * 8 6 5 40 40 H 1.08991 * 109.47222 * 192.79426 * 8 6 5 41 41 H 1.08994 * 109.47584 * 305.00129 * 9 6 5 42 42 H 1.09004 * 109.47331 * 65.00217 * 9 6 5 43 43 H 0.97002 * 119.99984 * 180.02562 * 13 12 10 44 44 H 1.09000 * 109.67425 * 290.12941 * 20 18 4 45 45 H 1.08993 * 109.68426 * 50.68298 * 20 18 4 46 46 H 1.09002 * 109.24935 * 171.38059 * 21 20 18 47 47 H 1.09000 * 109.25017 * 290.84744 * 21 20 18 48 48 H 1.07999 * 119.73253 * 359.73628 * 23 22 21 49 49 H 1.08006 * 120.11394 * 179.97438 * 24 23 22 50 50 H 1.08002 * 120.11863 * 180.14384 * 25 24 23 51 51 H 1.07997 * 119.73009 * 180.02562 * 26 25 24 52 52 H 1.08998 * 109.25637 * 221.93035 * 28 27 22 53 53 H 1.09004 * 109.24365 * 102.50031 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4438 0.1096 5 6 4.1252 0.9267 -1.1175 6 6 4.3190 2.0724 -2.1128 7 1 4.8706 2.8810 -1.6333 8 6 2.9528 2.5878 -2.5696 9 6 5.1048 1.5676 -3.3247 10 6 5.4021 2.7218 -4.2469 11 1 5.0646 3.7160 -3.9938 12 6 6.1057 2.5088 -5.4133 13 7 6.5171 1.2982 -5.7213 14 14 6.4748 3.9396 -6.5561 15 1 7.7730 4.5534 -6.1776 16 1 6.5485 3.4490 -7.9557 17 1 5.3961 4.9541 -6.4434 18 6 3.9457 0.6800 1.2845 19 1 3.7379 -0.3792 1.1328 20 6 3.2054 1.1779 2.5316 21 6 3.4999 0.2175 3.6821 22 6 4.9835 -0.0018 3.8226 23 6 5.4490 -0.5289 5.0205 24 6 6.7960 -0.7577 5.2093 25 6 7.6912 -0.4609 4.1982 26 6 7.2312 0.0641 3.0086 27 6 5.8753 0.2981 2.8177 28 6 5.4438 0.8855 1.4993 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 0.8901 33 1 1.8933 -0.5140 -0.8899 34 1 1.7446 1.9322 -0.9279 35 1 1.6118 1.9792 0.8465 36 1 5.0929 0.4862 -0.8777 37 1 3.4796 0.1673 -1.5588 38 1 2.3175 1.7439 -2.8389 39 1 2.4870 3.1492 -1.7597 40 1 3.0804 3.2374 -3.4354 41 1 6.0404 1.1196 -2.9902 42 1 4.5140 0.8212 -3.8557 43 1 7.0124 1.1484 -6.5418 44 1 3.5533 2.1781 2.7900 45 1 2.1332 1.2004 2.3375 46 1 3.1093 0.6369 4.6092 47 1 3.0129 -0.7378 3.4864 48 1 4.7505 -0.7612 5.8107 49 1 7.1503 -1.1674 6.1437 50 1 8.7469 -0.6399 4.3392 51 1 7.9309 0.2953 2.2191 52 1 5.9926 0.3998 0.6925 53 1 5.6649 1.9529 1.4920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621146349.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:14 Heat of formation + Delta-G solvation = -12.634934 kcal Electronic energy + Delta-G solvation = -27192.881808 eV Core-core repulsion = 23834.391863 eV Total energy + Delta-G solvation = -3358.489944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31318 -39.69282 -36.97893 -35.62108 -34.35615 -33.66083 -32.67153 -30.61270 -29.54848 -28.65343 -28.03192 -25.53074 -24.91323 -23.83102 -23.35160 -23.00889 -21.57342 -20.55706 -19.75016 -18.42982 -17.60918 -17.00758 -16.78117 -16.55465 -16.09573 -15.71432 -15.47388 -15.27274 -14.97507 -14.84204 -14.57380 -14.27784 -14.25112 -13.88106 -13.81128 -13.55058 -13.40070 -13.16378 -13.03992 -12.87091 -12.82576 -12.52516 -12.46136 -12.38804 -12.29161 -12.16082 -12.03806 -11.89756 -11.81250 -11.58700 -11.41286 -11.28565 -11.10630 -10.99460 -10.66487 -10.52465 -9.63548 -9.41980 -9.06011 -8.16567 -6.25418 0.48497 0.49159 1.39823 1.40891 1.51856 2.42232 2.86577 2.95780 3.16668 3.65751 3.86295 3.95529 4.06356 4.08088 4.13735 4.17433 4.21710 4.27801 4.32835 4.35588 4.44362 4.47428 4.55389 4.60418 4.66788 4.68991 4.74885 4.79301 4.85266 4.94024 4.97982 4.99074 5.01454 5.04980 5.09220 5.11251 5.15811 5.21486 5.24418 5.31254 5.33360 5.39208 5.42571 5.48749 5.57116 5.61241 5.63232 5.64912 5.80180 5.84524 5.91892 6.15782 6.21370 6.33660 6.36169 6.90567 7.42595 8.95463 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.003380 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.673039 B = 8281.163924 C =10044.554583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C 0.037 3.963 4 N -0.532 5.532 5 C 0.067 3.933 6 C -0.065 4.065 7 H 0.051 0.949 8 C -0.124 4.124 9 C 0.035 3.965 10 C -0.526 4.526 11 H 0.060 0.940 12 C -0.003 4.003 13 N -0.936 5.936 14 Si 0.960 3.040 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.263 1.263 18 C 0.091 3.909 19 H 0.038 0.962 20 C -0.108 4.108 21 C -0.074 4.074 22 C -0.088 4.088 23 C -0.126 4.126 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.139 4.139 27 C -0.086 4.086 28 C -0.073 4.073 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.039 0.961 41 H -0.017 1.017 42 H -0.013 1.013 43 H 0.261 0.739 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.081 0.919 48 H 0.143 0.857 49 H 0.145 0.855 50 H 0.136 0.864 51 H 0.116 0.884 52 H 0.056 0.944 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 -3.761 23.741 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.199 4.199 3 C -0.090 4.090 4 N -0.254 5.254 5 C -0.061 4.061 6 C -0.084 4.084 7 H 0.070 0.930 8 C -0.181 4.181 9 C -0.003 4.003 10 C -0.564 4.564 11 H 0.078 0.922 12 C -0.200 4.200 13 N -0.577 5.577 14 Si 0.785 3.215 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.187 1.187 18 C -0.017 4.017 19 H 0.056 0.944 20 C -0.146 4.146 21 C -0.111 4.111 22 C -0.088 4.088 23 C -0.143 4.143 24 C -0.146 4.146 25 C -0.149 4.149 26 C -0.158 4.158 27 C -0.087 4.087 28 C -0.110 4.110 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.001 0.999 42 H 0.005 0.995 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.099 0.901 48 H 0.161 0.839 49 H 0.162 0.838 50 H 0.154 0.846 51 H 0.134 0.866 52 H 0.074 0.926 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.128 -3.353 23.674 25.254 hybrid contribution 0.721 -0.523 -1.471 1.720 sum -7.406 -3.876 22.202 23.724 Atomic orbital electron populations 1.21643 0.94080 1.01923 1.02337 1.22160 0.97763 0.98661 1.01333 1.22723 0.86400 0.95997 1.03918 1.62188 1.07785 1.53698 1.01730 1.22115 0.97948 0.95715 0.90273 1.20930 0.96545 0.96769 0.94181 0.93021 1.21785 0.95887 1.00062 1.00329 1.18988 0.93345 0.95122 0.92812 1.21629 1.34094 0.95292 1.05378 0.92161 1.25945 0.95877 0.98264 0.99871 1.70109 1.39416 1.22570 1.25608 0.85526 0.78878 0.79382 0.77761 1.19984 1.20915 1.18673 1.21535 0.94076 0.95225 0.90883 0.94439 1.21670 1.00917 0.99285 0.92702 1.20499 0.90749 1.00195 0.99674 1.19903 0.96258 0.99086 0.93598 1.21451 0.96402 0.99385 0.97101 1.21395 0.93409 1.00139 0.99706 1.21322 1.00796 0.99342 0.93410 1.21358 0.95204 1.00604 0.98596 1.19707 0.93678 0.99770 0.95527 1.20469 0.96026 1.00900 0.93606 0.91296 0.92957 0.92573 0.91432 0.94001 0.89844 0.89031 0.92894 0.94838 0.93980 0.91253 0.94166 0.99909 0.99490 0.93006 0.91596 0.89471 0.88578 0.90072 0.83872 0.83767 0.84567 0.86587 0.92556 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.91 71.98 0.71 -1.76 16 2 C -0.16 -3.50 5.07 30.59 0.16 -3.35 16 3 C 0.04 0.88 4.36 86.30 0.38 1.25 16 4 N -0.53 -15.13 4.42 -870.85 -3.85 -18.97 16 5 C 0.07 2.40 4.36 86.31 0.38 2.77 16 6 C -0.07 -2.75 2.54 -10.79 -0.03 -2.77 16 7 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 8 C -0.12 -4.66 7.59 71.98 0.55 -4.12 16 9 C 0.03 1.88 4.45 29.85 0.13 2.01 16 10 C -0.53 -30.30 8.22 25.60 0.21 -30.09 16 11 H 0.06 3.35 7.15 -2.91 -0.02 3.33 16 12 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 13 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 14 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 18 C 0.09 2.27 1.23 44.93 0.06 2.33 16 19 H 0.04 0.99 6.61 -2.39 -0.02 0.98 16 20 C -0.11 -2.08 4.78 30.62 0.15 -1.93 16 21 C -0.07 -1.21 5.67 29.74 0.17 -1.04 16 22 C -0.09 -1.84 5.74 -19.86 -0.11 -1.96 16 23 C -0.13 -2.21 9.61 22.36 0.21 -1.99 16 24 C -0.13 -2.23 10.05 22.20 0.22 -2.01 16 25 C -0.13 -2.62 10.05 22.20 0.22 -2.40 16 26 C -0.14 -3.38 9.61 22.36 0.21 -3.17 16 27 C -0.09 -2.16 5.74 -19.86 -0.11 -2.27 16 28 C -0.07 -2.00 4.76 29.74 0.14 -1.86 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.40 5.81 -2.38 -0.01 1.39 16 33 H 0.04 1.10 6.55 -2.39 -0.02 1.09 16 34 H 0.08 2.18 4.23 -2.39 -0.01 2.17 16 35 H 0.09 1.83 6.36 -2.39 -0.02 1.81 16 36 H 0.05 2.00 5.88 -2.39 -0.01 1.98 16 37 H 0.03 1.21 6.01 -2.39 -0.01 1.20 16 38 H 0.04 1.51 7.66 -2.39 -0.02 1.49 16 39 H 0.07 2.22 6.40 -2.39 -0.02 2.21 16 40 H 0.04 1.68 6.68 -2.39 -0.02 1.66 16 41 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 42 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 43 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 45 H 0.09 1.44 5.53 -2.39 -0.01 1.43 16 46 H 0.10 1.19 8.12 -2.39 -0.02 1.17 16 47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.14 1.72 8.05 -2.91 -0.02 1.70 16 49 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 50 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 51 H 0.12 2.79 8.05 -2.91 -0.02 2.77 16 52 H 0.06 1.74 6.51 -2.39 -0.02 1.73 16 53 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -66.05 391.02 3.43 -62.62 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.86 Total: 19.04 kcal Atomic # 6 Polarization: -56.15 SS G_CDS: 4.11 Total: -52.04 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -3.56 Total: -76.85 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -66.05 3.43 -62.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621146349.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.983 kcal (2) G-P(sol) polarization free energy of solvation -66.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds