Wall clock time and date at job start Tue Mar 31 2020 10:37:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53000 * 109.47364 * 2 1
4 4 N 1.46907 * 109.46967 * 175.46152 * 3 2 1
5 5 C 1.46896 * 111.00179 * 69.33524 * 4 3 2
6 6 C 1.53005 * 109.46694 * 87.33051 * 5 4 3
7 7 H 1.08995 * 109.47201 * 53.70871 * 6 5 4
8 8 C 1.52997 * 109.47345 * 293.70314 * 6 5 4
9 9 C 1.53002 * 109.46486 * 173.70588 * 6 5 4
10 10 C 1.50699 * 109.46924 * 184.99882 * 9 6 5
11 11 H 1.08002 * 120.00289 * 0.02562 * 10 9 6
12 12 C 1.37871 * 120.00360 * 179.97438 * 10 9 6
13 13 N 1.31518 * 119.99862 * 0.02562 * 12 10 9
14 14 Si 1.86804 * 120.00495 * 180.02562 * 12 10 9
15 15 H 1.48502 * 109.47189 * 89.99700 * 14 12 10
16 16 H 1.48495 * 109.47144 * 210.00383 * 14 12 10
17 17 H 1.48508 * 109.46846 * 330.00085 * 14 12 10
18 18 C 1.46904 * 110.99850 * 305.37917 * 4 3 2
19 19 H 1.08999 * 109.67714 * 68.51235 * 18 4 3
20 20 C 1.53328 * 109.68285 * 307.99804 * 18 4 3
21 21 C 1.52736 * 108.38365 * 170.40793 * 20 18 4
22 22 C 1.50630 * 110.59274 * 51.09924 * 21 20 18
23 23 C 1.38903 * 117.75630 * 162.27268 * 22 21 20
24 24 C 1.37932 * 120.54525 * 179.76316 * 23 22 21
25 25 C 1.38268 * 119.77470 * 359.96079 * 24 23 22
26 26 C 1.37928 * 119.76769 * 0.11568 * 25 24 23
27 27 C 1.37661 * 122.56198 * 342.22409 * 22 21 20
28 28 C 1.50643 * 122.56504 * 0.72551 * 27 22 21
29 29 H 1.08998 * 109.47240 * 300.00932 * 1 2 3
30 30 H 1.09011 * 109.46675 * 60.00453 * 1 2 3
31 31 H 1.08995 * 109.47716 * 180.02562 * 1 2 3
32 32 H 1.09011 * 109.46675 * 119.99547 * 2 1 3
33 33 H 1.08998 * 109.47240 * 239.99068 * 2 1 3
34 34 H 1.08999 * 109.46697 * 295.45876 * 3 2 1
35 35 H 1.08996 * 109.47025 * 55.46011 * 3 2 1
36 36 H 1.08993 * 109.47139 * 207.32918 * 5 4 3
37 37 H 1.09003 * 109.47242 * 327.33295 * 5 4 3
38 38 H 1.09001 * 109.47307 * 312.80252 * 8 6 5
39 39 H 1.09002 * 109.46541 * 72.79718 * 8 6 5
40 40 H 1.08991 * 109.47222 * 192.79426 * 8 6 5
41 41 H 1.08994 * 109.47584 * 305.00129 * 9 6 5
42 42 H 1.09004 * 109.47331 * 65.00217 * 9 6 5
43 43 H 0.97002 * 119.99984 * 180.02562 * 13 12 10
44 44 H 1.09000 * 109.67425 * 290.12941 * 20 18 4
45 45 H 1.08993 * 109.68426 * 50.68298 * 20 18 4
46 46 H 1.09002 * 109.24935 * 171.38059 * 21 20 18
47 47 H 1.09000 * 109.25017 * 290.84744 * 21 20 18
48 48 H 1.07999 * 119.73253 * 359.73628 * 23 22 21
49 49 H 1.08006 * 120.11394 * 179.97438 * 24 23 22
50 50 H 1.08002 * 120.11863 * 180.14384 * 25 24 23
51 51 H 1.07997 * 119.73009 * 180.02562 * 26 25 24
52 52 H 1.08998 * 109.25637 * 221.93035 * 28 27 22
53 53 H 1.09004 * 109.24365 * 102.50031 * 28 27 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4438 0.1096
5 6 4.1252 0.9267 -1.1175
6 6 4.3190 2.0724 -2.1128
7 1 4.8706 2.8810 -1.6333
8 6 2.9528 2.5878 -2.5696
9 6 5.1048 1.5676 -3.3247
10 6 5.4021 2.7218 -4.2469
11 1 5.0646 3.7160 -3.9938
12 6 6.1057 2.5088 -5.4133
13 7 6.5171 1.2982 -5.7213
14 14 6.4748 3.9396 -6.5561
15 1 7.7730 4.5534 -6.1776
16 1 6.5485 3.4490 -7.9557
17 1 5.3961 4.9541 -6.4434
18 6 3.9457 0.6800 1.2845
19 1 3.7379 -0.3792 1.1328
20 6 3.2054 1.1779 2.5316
21 6 3.4999 0.2175 3.6821
22 6 4.9835 -0.0018 3.8226
23 6 5.4490 -0.5289 5.0205
24 6 6.7960 -0.7577 5.2093
25 6 7.6912 -0.4609 4.1982
26 6 7.2312 0.0641 3.0086
27 6 5.8753 0.2981 2.8177
28 6 5.4438 0.8855 1.4993
29 1 -0.3633 0.5140 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3634 -1.0276 0.0005
32 1 1.8932 -0.5138 0.8901
33 1 1.8933 -0.5140 -0.8899
34 1 1.7446 1.9322 -0.9279
35 1 1.6118 1.9792 0.8465
36 1 5.0929 0.4862 -0.8777
37 1 3.4796 0.1673 -1.5588
38 1 2.3175 1.7439 -2.8389
39 1 2.4870 3.1492 -1.7597
40 1 3.0804 3.2374 -3.4354
41 1 6.0404 1.1196 -2.9902
42 1 4.5140 0.8212 -3.8557
43 1 7.0124 1.1484 -6.5418
44 1 3.5533 2.1781 2.7900
45 1 2.1332 1.2004 2.3375
46 1 3.1093 0.6369 4.6092
47 1 3.0129 -0.7378 3.4864
48 1 4.7505 -0.7612 5.8107
49 1 7.1503 -1.1674 6.1437
50 1 8.7469 -0.6399 4.3392
51 1 7.9309 0.2953 2.2191
52 1 5.9926 0.3998 0.6925
53 1 5.6649 1.9529 1.4920
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001621146349.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:37:14
Heat of formation + Delta-G solvation = -12.634934 kcal
Electronic energy + Delta-G solvation = -27192.881808 eV
Core-core repulsion = 23834.391863 eV
Total energy + Delta-G solvation = -3358.489944 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 315.226 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.31318 -39.69282 -36.97893 -35.62108 -34.35615 -33.66083 -32.67153 -30.61270
-29.54848 -28.65343 -28.03192 -25.53074 -24.91323 -23.83102 -23.35160 -23.00889
-21.57342 -20.55706 -19.75016 -18.42982 -17.60918 -17.00758 -16.78117 -16.55465
-16.09573 -15.71432 -15.47388 -15.27274 -14.97507 -14.84204 -14.57380 -14.27784
-14.25112 -13.88106 -13.81128 -13.55058 -13.40070 -13.16378 -13.03992 -12.87091
-12.82576 -12.52516 -12.46136 -12.38804 -12.29161 -12.16082 -12.03806 -11.89756
-11.81250 -11.58700 -11.41286 -11.28565 -11.10630 -10.99460 -10.66487 -10.52465
-9.63548 -9.41980 -9.06011 -8.16567 -6.25418 0.48497 0.49159 1.39823
1.40891 1.51856 2.42232 2.86577 2.95780 3.16668 3.65751 3.86295
3.95529 4.06356 4.08088 4.13735 4.17433 4.21710 4.27801 4.32835
4.35588 4.44362 4.47428 4.55389 4.60418 4.66788 4.68991 4.74885
4.79301 4.85266 4.94024 4.97982 4.99074 5.01454 5.04980 5.09220
5.11251 5.15811 5.21486 5.24418 5.31254 5.33360 5.39208 5.42571
5.48749 5.57116 5.61241 5.63232 5.64912 5.80180 5.84524 5.91892
6.15782 6.21370 6.33660 6.36169 6.90567 7.42595 8.95463
Molecular weight = 315.23amu
Principal moments of inertia in cm(-1)
A = 0.012527 B = 0.003380 C = 0.002787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2234.673039 B = 8281.163924 C =10044.554583
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.160 4.160
3 C 0.037 3.963
4 N -0.532 5.532
5 C 0.067 3.933
6 C -0.065 4.065
7 H 0.051 0.949
8 C -0.124 4.124
9 C 0.035 3.965
10 C -0.526 4.526
11 H 0.060 0.940
12 C -0.003 4.003
13 N -0.936 5.936
14 Si 0.960 3.040
15 H -0.274 1.274
16 H -0.284 1.284
17 H -0.263 1.263
18 C 0.091 3.909
19 H 0.038 0.962
20 C -0.108 4.108
21 C -0.074 4.074
22 C -0.088 4.088
23 C -0.126 4.126
24 C -0.129 4.129
25 C -0.131 4.131
26 C -0.139 4.139
27 C -0.086 4.086
28 C -0.073 4.073
29 H 0.068 0.932
30 H 0.051 0.949
31 H 0.055 0.945
32 H 0.067 0.933
33 H 0.041 0.959
34 H 0.083 0.917
35 H 0.092 0.908
36 H 0.053 0.947
37 H 0.033 0.967
38 H 0.041 0.959
39 H 0.069 0.931
40 H 0.039 0.961
41 H -0.017 1.017
42 H -0.013 1.013
43 H 0.261 0.739
44 H 0.065 0.935
45 H 0.087 0.913
46 H 0.096 0.904
47 H 0.081 0.919
48 H 0.143 0.857
49 H 0.145 0.855
50 H 0.136 0.864
51 H 0.116 0.884
52 H 0.056 0.944
53 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.369 -3.761 23.741 25.453
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.199 4.199
3 C -0.090 4.090
4 N -0.254 5.254
5 C -0.061 4.061
6 C -0.084 4.084
7 H 0.070 0.930
8 C -0.181 4.181
9 C -0.003 4.003
10 C -0.564 4.564
11 H 0.078 0.922
12 C -0.200 4.200
13 N -0.577 5.577
14 Si 0.785 3.215
15 H -0.200 1.200
16 H -0.209 1.209
17 H -0.187 1.187
18 C -0.017 4.017
19 H 0.056 0.944
20 C -0.146 4.146
21 C -0.111 4.111
22 C -0.088 4.088
23 C -0.143 4.143
24 C -0.146 4.146
25 C -0.149 4.149
26 C -0.158 4.158
27 C -0.087 4.087
28 C -0.110 4.110
29 H 0.087 0.913
30 H 0.070 0.930
31 H 0.074 0.926
32 H 0.086 0.914
33 H 0.060 0.940
34 H 0.102 0.898
35 H 0.110 0.890
36 H 0.071 0.929
37 H 0.052 0.948
38 H 0.060 0.940
39 H 0.087 0.913
40 H 0.058 0.942
41 H 0.001 0.999
42 H 0.005 0.995
43 H 0.070 0.930
44 H 0.084 0.916
45 H 0.105 0.895
46 H 0.114 0.886
47 H 0.099 0.901
48 H 0.161 0.839
49 H 0.162 0.838
50 H 0.154 0.846
51 H 0.134 0.866
52 H 0.074 0.926
53 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -8.128 -3.353 23.674 25.254
hybrid contribution 0.721 -0.523 -1.471 1.720
sum -7.406 -3.876 22.202 23.724
Atomic orbital electron populations
1.21643 0.94080 1.01923 1.02337 1.22160 0.97763 0.98661 1.01333
1.22723 0.86400 0.95997 1.03918 1.62188 1.07785 1.53698 1.01730
1.22115 0.97948 0.95715 0.90273 1.20930 0.96545 0.96769 0.94181
0.93021 1.21785 0.95887 1.00062 1.00329 1.18988 0.93345 0.95122
0.92812 1.21629 1.34094 0.95292 1.05378 0.92161 1.25945 0.95877
0.98264 0.99871 1.70109 1.39416 1.22570 1.25608 0.85526 0.78878
0.79382 0.77761 1.19984 1.20915 1.18673 1.21535 0.94076 0.95225
0.90883 0.94439 1.21670 1.00917 0.99285 0.92702 1.20499 0.90749
1.00195 0.99674 1.19903 0.96258 0.99086 0.93598 1.21451 0.96402
0.99385 0.97101 1.21395 0.93409 1.00139 0.99706 1.21322 1.00796
0.99342 0.93410 1.21358 0.95204 1.00604 0.98596 1.19707 0.93678
0.99770 0.95527 1.20469 0.96026 1.00900 0.93606 0.91296 0.92957
0.92573 0.91432 0.94001 0.89844 0.89031 0.92894 0.94838 0.93980
0.91253 0.94166 0.99909 0.99490 0.93006 0.91596 0.89471 0.88578
0.90072 0.83872 0.83767 0.84567 0.86587 0.92556 0.90769
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.48 9.91 71.98 0.71 -1.76 16
2 C -0.16 -3.50 5.07 30.59 0.16 -3.35 16
3 C 0.04 0.88 4.36 86.30 0.38 1.25 16
4 N -0.53 -15.13 4.42 -870.85 -3.85 -18.97 16
5 C 0.07 2.40 4.36 86.31 0.38 2.77 16
6 C -0.07 -2.75 2.54 -10.79 -0.03 -2.77 16
7 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16
8 C -0.12 -4.66 7.59 71.98 0.55 -4.12 16
9 C 0.03 1.88 4.45 29.85 0.13 2.01 16
10 C -0.53 -30.30 8.22 25.60 0.21 -30.09 16
11 H 0.06 3.35 7.15 -2.91 -0.02 3.33 16
12 C 0.00 -0.15 5.46 84.65 0.46 0.31 16
13 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16
14 Si 0.96 45.20 29.54 68.60 2.03 47.23 16
15 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16
16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16
17 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16
18 C 0.09 2.27 1.23 44.93 0.06 2.33 16
19 H 0.04 0.99 6.61 -2.39 -0.02 0.98 16
20 C -0.11 -2.08 4.78 30.62 0.15 -1.93 16
21 C -0.07 -1.21 5.67 29.74 0.17 -1.04 16
22 C -0.09 -1.84 5.74 -19.86 -0.11 -1.96 16
23 C -0.13 -2.21 9.61 22.36 0.21 -1.99 16
24 C -0.13 -2.23 10.05 22.20 0.22 -2.01 16
25 C -0.13 -2.62 10.05 22.20 0.22 -2.40 16
26 C -0.14 -3.38 9.61 22.36 0.21 -3.17 16
27 C -0.09 -2.16 5.74 -19.86 -0.11 -2.27 16
28 C -0.07 -2.00 4.76 29.74 0.14 -1.86 16
29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16
31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
32 H 0.07 1.40 5.81 -2.38 -0.01 1.39 16
33 H 0.04 1.10 6.55 -2.39 -0.02 1.09 16
34 H 0.08 2.18 4.23 -2.39 -0.01 2.17 16
35 H 0.09 1.83 6.36 -2.39 -0.02 1.81 16
36 H 0.05 2.00 5.88 -2.39 -0.01 1.98 16
37 H 0.03 1.21 6.01 -2.39 -0.01 1.20 16
38 H 0.04 1.51 7.66 -2.39 -0.02 1.49 16
39 H 0.07 2.22 6.40 -2.39 -0.02 2.21 16
40 H 0.04 1.68 6.68 -2.39 -0.02 1.66 16
41 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16
42 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16
43 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16
44 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16
45 H 0.09 1.44 5.53 -2.39 -0.01 1.43 16
46 H 0.10 1.19 8.12 -2.39 -0.02 1.17 16
47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
48 H 0.14 1.72 8.05 -2.91 -0.02 1.70 16
49 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16
50 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16
51 H 0.12 2.79 8.05 -2.91 -0.02 2.77 16
52 H 0.06 1.74 6.51 -2.39 -0.02 1.73 16
53 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16
Total: -1.00 -66.05 391.02 3.43 -62.62
By element:
Atomic # 1 Polarization: 18.18 SS G_CDS: 0.86 Total: 19.04 kcal
Atomic # 6 Polarization: -56.15 SS G_CDS: 4.11 Total: -52.04 kcal
Atomic # 7 Polarization: -73.29 SS G_CDS: -3.56 Total: -76.85 kcal
Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal
Total: -66.05 3.43 -62.62 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001621146349.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.983 kcal
(2) G-P(sol) polarization free energy of solvation -66.053 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.069 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.618 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.635 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds