Wall clock time and date at job start Tue Mar 31 2020 10:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46761 * 2 1 4 4 C 1.53001 * 109.47323 * 240.00241 * 2 1 3 5 5 C 1.50696 * 109.46966 * 64.99581 * 4 2 1 6 6 H 1.08001 * 120.00516 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00151 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00244 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99519 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47496 * 89.99798 * 9 7 5 11 11 H 1.48503 * 109.47003 * 209.99930 * 9 7 5 12 12 H 1.48501 * 109.47370 * 329.99573 * 9 7 5 13 13 C 1.53002 * 109.47424 * 119.99857 * 2 1 3 14 14 N 1.46899 * 109.47097 * 295.00506 * 13 2 1 15 15 C 1.46904 * 110.99947 * 179.97438 * 14 13 2 16 16 C 1.52996 * 109.46970 * 185.54884 * 15 14 13 17 17 C 1.52996 * 110.02001 * 295.55283 * 16 15 14 18 18 C 1.50696 * 109.46962 * 301.61446 * 17 16 15 19 19 C 1.38237 * 120.00251 * 269.12672 * 18 17 16 20 20 C 1.38236 * 119.99980 * 179.80821 * 19 18 17 21 21 C 1.38239 * 119.99943 * 0.39958 * 20 19 18 22 22 C 1.38233 * 120.00016 * 359.85573 * 21 20 19 23 23 C 1.38235 * 119.99846 * 89.40044 * 18 17 16 24 24 C 1.54276 * 110.07115 * 56.97059 * 16 15 14 25 25 C 1.54885 * 104.19308 * 142.91431 * 24 16 15 26 26 C 1.54890 * 102.75056 * 322.05516 * 25 24 16 27 27 C 1.53873 * 110.03185 * 174.15624 * 16 15 14 28 28 H 1.08997 * 109.47422 * 59.99983 * 1 2 3 29 29 H 1.09002 * 109.46761 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47034 * 300.00062 * 1 2 3 31 31 H 1.08999 * 109.47181 * 184.99694 * 4 2 1 32 32 H 1.09002 * 109.46948 * 305.00014 * 4 2 1 33 33 H 0.97003 * 120.00053 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47032 * 174.99924 * 13 2 1 35 35 H 1.09004 * 109.46676 * 55.00182 * 13 2 1 36 36 H 1.00909 * 110.99962 * 303.95017 * 14 13 2 37 37 H 1.09000 * 109.46716 * 65.55232 * 15 14 13 38 38 H 1.08998 * 109.46808 * 305.55162 * 15 14 13 39 39 H 1.08994 * 109.47467 * 61.61613 * 17 16 15 40 40 H 1.08996 * 109.46956 * 181.61897 * 17 16 15 41 41 H 1.08002 * 119.99844 * 0.02562 * 19 18 17 42 42 H 1.08006 * 120.00011 * 180.23239 * 20 19 18 43 43 H 1.07997 * 119.99884 * 179.83337 * 21 20 19 44 44 H 1.07999 * 120.00040 * 179.97438 * 22 21 20 45 45 H 1.08001 * 120.00057 * 359.97438 * 23 18 17 46 46 H 1.09000 * 110.48629 * 24.23717 * 24 16 15 47 47 H 1.09000 * 110.48296 * 261.59137 * 24 16 15 48 48 H 1.09001 * 110.75749 * 203.74276 * 25 24 16 49 49 H 1.08998 * 110.76073 * 80.37132 * 25 24 16 50 50 H 1.09007 * 110.48599 * 156.62403 * 26 25 24 51 51 H 1.08997 * 110.48726 * 279.12897 * 26 25 24 52 52 H 1.09001 * 110.03471 * 121.38193 * 27 16 15 53 53 H 1.09007 * 110.03257 * 359.95873 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4765 6 1 1.0806 0.9746 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 1.6439 0.2768 -4.7994 9 14 2.9616 -1.9894 -3.9029 10 1 2.0217 -3.1332 -4.0195 11 1 3.8101 -1.9200 -5.1197 12 1 3.8237 -2.1770 -2.7084 13 6 2.0401 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6271 3.6672 16 6 1.5855 0.1136 4.8925 17 6 2.1637 1.5291 4.9453 18 6 3.6681 1.4557 4.9929 19 6 4.3198 1.4116 6.2112 20 6 5.6997 1.3402 6.2548 21 6 6.4282 1.3213 5.0801 22 6 5.7768 1.3707 3.8619 23 6 4.3967 1.4381 3.8183 24 6 0.0448 0.1738 4.8390 25 6 -0.3933 0.0062 6.3151 26 6 0.6200 -1.0326 6.8566 27 6 1.9511 -0.6535 6.1753 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1264 -0.7993 -1.2056 32 1 1.6054 -1.7198 -1.2952 33 1 1.8912 -0.0461 -5.6801 34 1 3.1264 -0.7994 1.2055 35 1 1.6055 -1.7198 1.2951 36 1 1.9882 0.9874 2.3967 37 1 3.2146 -0.6171 3.6872 38 1 1.7706 -1.6579 3.6807 39 1 1.8548 2.0812 4.0578 40 1 1.7965 2.0385 5.8362 41 1 3.7508 1.4293 7.1290 42 1 6.2087 1.3020 7.2066 43 1 7.5063 1.2682 5.1142 44 1 6.3460 1.3563 2.9442 45 1 3.8878 1.4766 2.8665 46 1 -0.3478 -0.6404 4.2298 47 1 -0.2860 1.1367 4.4498 48 1 -1.4110 -0.3796 6.3747 49 1 -0.3045 0.9495 6.8539 50 1 0.7088 -0.9502 7.9399 51 1 0.3189 -2.0417 6.5753 52 1 2.5405 -0.0173 6.8356 53 1 2.5122 -1.5538 5.9249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652024932.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:04 Heat of formation + Delta-G solvation = -11.837700 kcal Electronic energy + Delta-G solvation = -27079.326207 eV Core-core repulsion = 23720.870833 eV Total energy + Delta-G solvation = -3358.455374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36387 -38.41841 -36.62817 -34.11260 -32.87688 -31.85531 -31.01322 -29.57020 -28.79403 -27.46440 -26.30763 -25.12579 -23.45019 -22.63295 -21.90703 -21.40757 -20.68167 -19.28572 -18.50200 -16.88687 -16.70117 -15.91877 -15.83787 -15.11192 -15.09286 -14.89271 -14.49915 -14.19053 -13.96563 -13.69798 -13.63428 -13.39811 -12.94812 -12.86439 -12.61984 -12.42742 -12.31381 -11.74453 -11.66318 -11.62582 -11.42899 -11.22061 -11.12183 -11.04402 -10.95402 -10.81288 -10.74583 -10.58992 -10.58710 -10.39239 -10.32132 -9.76036 -9.71240 -9.34637 -9.03777 -9.01781 -8.78119 -8.49689 -8.07089 -6.00082 -3.96682 1.23416 1.27031 3.32679 3.40000 3.43653 3.65035 4.27077 4.48546 4.51098 4.53196 4.66806 4.74408 4.81545 4.87879 4.99459 5.12204 5.14399 5.29038 5.33737 5.37402 5.41711 5.43428 5.50251 5.58980 5.62643 5.67319 5.74834 5.76438 5.84275 5.85973 5.86309 5.91547 5.96391 5.99351 6.07317 6.08672 6.22279 6.31424 6.34003 6.38909 6.39923 6.41779 6.47086 6.53578 6.62784 6.88030 6.88494 7.07564 7.18704 7.31085 7.36137 7.49934 7.66134 7.85448 8.59841 9.06000 9.63093 11.13412 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.003314 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.935202 B = 8445.810977 C = 9855.119099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 H 0.058 0.942 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.682 5.682 15 C 0.066 3.934 16 C -0.048 4.048 17 C -0.073 4.073 18 C -0.072 4.072 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.128 4.128 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.097 4.097 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.118 4.118 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.011 0.989 32 H 0.010 0.990 33 H 0.262 0.738 34 H 0.021 0.979 35 H 0.065 0.935 36 H 0.334 0.666 37 H 0.032 0.968 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.059 0.941 51 H 0.062 0.938 52 H 0.068 0.932 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 0.607 27.049 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 H 0.076 0.924 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.067 4.067 14 N -0.313 5.313 15 C -0.064 4.064 16 C -0.049 4.049 17 C -0.110 4.110 18 C -0.072 4.072 19 C -0.137 4.137 20 C -0.139 4.139 21 C -0.146 4.146 22 C -0.134 4.134 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.167 4.167 26 C -0.161 4.161 27 C -0.156 4.156 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.153 0.847 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.077 0.923 51 H 0.081 0.919 52 H 0.086 0.914 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.889 0.318 26.877 27.033 hybrid contribution 1.661 -0.741 -0.400 1.862 sum 4.549 -0.423 26.477 26.868 Atomic orbital electron populations 1.21585 0.95272 1.00563 1.00631 1.20994 0.96339 0.98885 0.92945 0.92390 1.19609 0.95637 0.95878 0.93563 1.21141 1.35168 1.09538 0.89098 0.90838 1.25029 0.95689 0.96903 0.95975 1.69915 1.47258 1.39349 0.97984 0.86813 0.80651 0.84449 0.77547 1.20376 1.21522 1.19171 1.22156 0.96931 0.97777 0.89835 1.60539 1.63941 1.05531 1.01300 1.22126 0.97096 0.97823 0.89334 1.21108 0.95799 0.93733 0.94209 1.20773 0.90243 0.97015 1.02994 1.19904 0.95818 0.98504 0.92990 1.21031 0.94309 1.01175 0.97216 1.21110 0.94199 1.00546 0.98090 1.21115 0.99742 1.01100 0.92657 1.21191 0.94660 0.99603 0.97978 1.21120 0.94099 1.00107 0.97924 1.22274 0.93253 1.02709 0.95265 1.22551 0.98496 0.98710 0.96898 1.22340 0.95323 0.99167 0.99270 1.22326 0.97307 0.99916 0.96082 0.92388 0.94313 0.93629 0.97049 0.97122 0.92862 0.96076 0.91684 0.84736 0.95003 0.91460 0.90448 0.90983 0.86280 0.86427 0.86415 0.86109 0.86287 0.90759 0.91464 0.91934 0.91968 0.92260 0.91889 0.91350 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.07 -1.42 2.48 -90.62 -0.22 -1.64 16 3 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.50 8.96 -34.44 -0.31 -14.81 16 6 H 0.07 2.24 7.30 -52.49 -0.38 1.85 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 9 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 13 C 0.06 1.00 5.06 -3.82 -0.02 0.98 16 14 N -0.68 -9.00 5.43 -113.78 -0.62 -9.62 16 15 C 0.07 0.76 3.77 -3.82 -0.01 0.75 16 16 C -0.05 -0.46 0.48 -153.39 -0.07 -0.54 16 17 C -0.07 -0.68 3.93 -27.89 -0.11 -0.79 16 18 C -0.07 -0.73 4.23 -104.63 -0.44 -1.17 16 19 C -0.12 -1.11 8.39 -39.58 -0.33 -1.44 16 20 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 21 C -0.13 -1.24 10.05 -39.58 -0.40 -1.63 16 22 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 23 C -0.11 -1.27 7.77 -39.58 -0.31 -1.58 16 24 C -0.10 -0.96 5.46 -25.07 -0.14 -1.10 16 25 C -0.13 -1.08 6.91 -24.74 -0.17 -1.25 16 26 C -0.12 -1.00 6.83 -25.07 -0.17 -1.18 16 27 C -0.12 -1.05 5.66 -25.62 -0.14 -1.19 16 28 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 31 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 32 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.33 4.29 5.81 -39.29 -0.23 4.07 16 37 H 0.03 0.40 5.89 -51.93 -0.31 0.09 16 38 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 39 H 0.08 0.77 6.87 -51.93 -0.36 0.41 16 40 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 41 H 0.12 0.92 7.00 -52.49 -0.37 0.55 16 42 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 1.37 6.57 -52.49 -0.35 1.03 16 46 H 0.07 0.84 7.86 -51.93 -0.41 0.44 16 47 H 0.07 0.69 7.84 -51.93 -0.41 0.28 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 52 H 0.07 0.57 5.12 -51.93 -0.27 0.30 16 53 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 LS Contribution 396.79 15.07 5.98 5.98 Total: -1.00 -29.94 396.79 -11.70 -41.64 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -9.66 Total: 2.28 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: -3.52 Total: -30.27 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.16 Total: -36.97 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.94 -11.70 -41.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652024932.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.807 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds