Wall clock time and date at job start Tue Mar 31 2020 10:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47439 * 2 1 4 4 C 1.50698 * 109.47254 * 239.99359 * 2 1 3 5 5 C 1.38235 * 119.99475 * 59.72917 * 4 2 1 6 6 C 1.38243 * 119.99975 * 179.74347 * 5 4 2 7 7 C 1.38238 * 119.99670 * 0.53181 * 6 5 4 8 8 C 1.50693 * 119.99969 * 179.76977 * 7 6 5 9 9 H 1.09002 * 110.33349 * 160.67896 * 8 7 6 10 10 C 1.54909 * 110.37517 * 282.93018 * 8 7 6 11 11 C 1.55259 * 101.59895 * 155.81364 * 10 8 7 12 12 C 1.54318 * 103.08796 * 324.49296 * 11 10 8 13 13 N 1.47440 * 107.23265 * 22.20241 * 12 11 10 14 14 C 1.46897 * 110.99967 * 123.26005 * 13 12 11 15 15 C 1.53005 * 109.47522 * 55.69036 * 14 13 12 16 16 H 1.08996 * 109.46858 * 304.03979 * 15 14 13 17 17 C 1.53005 * 109.46679 * 64.03271 * 15 14 13 18 18 C 1.52999 * 109.47234 * 184.03325 * 15 14 13 19 19 C 1.50704 * 109.46856 * 175.00169 * 18 15 14 20 20 H 1.08001 * 119.99903 * 0.02562 * 19 18 15 21 21 C 1.37875 * 119.99754 * 179.97438 * 19 18 15 22 22 N 1.31510 * 120.00226 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99715 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47079 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.46832 * 119.99846 * 23 21 19 26 26 H 1.48498 * 109.47126 * 240.00132 * 23 21 19 27 27 C 1.38236 * 119.99931 * 359.74381 * 7 6 5 28 28 C 1.38231 * 120.00606 * 240.00432 * 4 2 1 29 29 H 1.09001 * 109.46841 * 60.00028 * 1 2 3 30 30 H 1.08994 * 109.47005 * 300.00646 * 1 2 3 31 31 H 1.08998 * 109.47362 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46841 * 119.99972 * 2 1 3 33 33 H 1.09004 * 109.47549 * 59.99545 * 3 2 1 34 34 H 1.09005 * 109.47170 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47081 * 299.99824 * 3 2 1 36 36 H 1.08001 * 120.00194 * 0.02562 * 5 4 2 37 37 H 1.07994 * 120.00337 * 180.29885 * 6 5 4 38 38 H 1.08995 * 110.99002 * 273.99433 * 10 8 7 39 39 H 1.09005 * 110.98453 * 37.81029 * 10 8 7 40 40 H 1.08998 * 110.74450 * 206.05209 * 11 10 8 41 41 H 1.09000 * 110.75214 * 82.93469 * 11 10 8 42 42 H 1.08995 * 109.88408 * 262.79411 * 12 11 10 43 43 H 1.09004 * 109.88606 * 141.60849 * 12 11 10 44 44 H 1.09003 * 109.47465 * 175.69636 * 14 13 12 45 45 H 1.09005 * 109.47364 * 295.69187 * 14 13 12 46 46 H 1.08998 * 109.47050 * 300.00624 * 17 15 14 47 47 H 1.09001 * 109.46805 * 59.99828 * 17 15 14 48 48 H 1.08996 * 109.46999 * 180.02562 * 17 15 14 49 49 H 1.08997 * 109.46869 * 294.99819 * 18 15 14 50 50 H 1.08992 * 109.46929 * 55.00497 * 18 15 14 51 51 H 0.97003 * 120.00110 * 179.97438 * 22 21 19 52 52 H 1.08001 * 120.00167 * 180.02562 * 27 7 6 53 53 H 1.08006 * 119.99653 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6938 -0.2416 -2.4859 6 6 2.1589 -0.8902 -3.6146 7 6 2.9536 -2.0142 -3.4877 8 6 3.4564 -2.7243 -4.7181 9 1 4.3133 -3.3507 -4.4703 10 6 2.3276 -3.5789 -5.3467 11 6 2.7971 -3.6788 -6.8232 12 6 3.4446 -2.3013 -7.0780 13 7 3.8198 -1.7455 -5.7649 14 6 5.2539 -1.4312 -5.7167 15 6 5.6076 -0.4846 -6.8655 16 1 5.3064 -0.9335 -7.8120 17 6 4.8741 0.8446 -6.6753 18 6 7.1174 -0.2370 -6.8760 19 6 7.4816 0.5951 -8.0786 20 1 6.7130 0.9156 -8.7663 21 6 8.7959 0.9480 -8.3002 22 7 9.7316 0.5590 -7.4619 23 14 9.2473 1.9800 -9.7904 24 1 8.0213 2.2856 -10.5706 25 1 9.8781 3.2473 -9.3421 26 1 10.2013 1.2268 -10.6435 27 6 3.2875 -2.4864 -2.2322 28 6 2.8270 -1.8345 -1.1035 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.0696 0.6342 -2.5850 37 1 1.8984 -0.5210 -4.5955 38 1 2.2794 -4.5641 -4.8829 39 1 1.3668 -3.0687 -5.2770 40 1 1.9480 -3.8345 -7.4887 41 1 3.5297 -4.4770 -6.9424 42 1 2.7302 -1.6412 -7.5697 43 1 4.3329 -2.4183 -7.6987 44 1 5.4893 -0.9527 -4.7660 45 1 5.8310 -2.3510 -5.8131 46 1 3.7985 0.6681 -6.6677 47 1 5.1752 1.2934 -5.7287 48 1 5.1256 1.5188 -7.4939 49 1 7.4051 0.2921 -5.9675 50 1 7.6417 -1.1914 -6.9223 51 1 10.6563 0.8070 -7.6180 52 1 3.9087 -3.3643 -2.1330 53 1 3.0876 -2.2037 -0.1225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658278783.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:35 Heat of formation + Delta-G solvation = -5.150076 kcal Electronic energy + Delta-G solvation = -26746.013398 eV Core-core repulsion = 23387.848022 eV Total energy + Delta-G solvation = -3358.165377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.03545 -38.67088 -35.71278 -34.96505 -32.46396 -31.02143 -30.76803 -30.44487 -27.45166 -27.31212 -26.74436 -25.35280 -23.36833 -22.76091 -22.56639 -21.18294 -20.36561 -19.67541 -18.43429 -16.80522 -16.47315 -15.81094 -15.54024 -15.05399 -14.58501 -14.42971 -14.12654 -13.98660 -13.76196 -13.64698 -13.32814 -13.23980 -12.90927 -12.64185 -12.51002 -12.48328 -12.31974 -12.03042 -11.73282 -11.48270 -11.35554 -11.31964 -11.17164 -11.11094 -11.00001 -10.83839 -10.73809 -10.63698 -10.59017 -10.53685 -10.25742 -10.14299 -9.59600 -9.10858 -8.91386 -8.77460 -8.37618 -8.31135 -7.99906 -5.95756 -3.96702 1.42639 1.55511 3.32911 3.40481 3.44515 3.80183 4.21854 4.49524 4.54708 4.67593 4.69671 4.81545 5.03159 5.04057 5.09596 5.11780 5.20715 5.29363 5.39673 5.40313 5.43998 5.52757 5.56275 5.62708 5.65554 5.72806 5.78523 5.80368 5.81996 5.82863 5.89368 6.02457 6.04511 6.08745 6.09299 6.16027 6.19992 6.23515 6.29874 6.47636 6.55914 6.59213 6.69959 6.71960 6.80230 7.07002 7.11764 7.17340 7.24398 7.37473 7.50386 7.72271 7.88270 8.04861 8.48881 9.09962 9.66611 11.15835 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.003036 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.829028 B = 9221.129422 C =10441.841144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.145 4.145 4 C -0.083 4.083 5 C -0.120 4.120 6 C -0.081 4.081 7 C -0.067 4.067 8 C 0.107 3.893 9 H 0.059 0.941 10 C -0.116 4.116 11 C -0.143 4.143 12 C 0.040 3.960 13 N -0.517 5.517 14 C 0.058 3.942 15 C -0.083 4.083 16 H 0.057 0.943 17 C -0.121 4.121 18 C 0.027 3.973 19 C -0.510 4.510 20 H 0.056 0.944 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.888 3.112 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.116 4.116 28 C -0.123 4.123 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.027 0.973 46 H 0.040 0.960 47 H 0.039 0.961 48 H 0.052 0.948 49 H 0.015 0.985 50 H 0.011 0.989 51 H 0.258 0.742 52 H 0.116 0.884 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.388 -6.553 12.580 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.083 4.083 5 C -0.138 4.138 6 C -0.099 4.099 7 C -0.067 4.067 8 C -0.001 4.001 9 H 0.077 0.923 10 C -0.154 4.154 11 C -0.181 4.181 12 C -0.088 4.088 13 N -0.241 5.241 14 C -0.069 4.069 15 C -0.102 4.102 16 H 0.075 0.925 17 C -0.178 4.178 18 C -0.010 4.010 19 C -0.549 4.549 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.717 3.283 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.135 4.135 28 C -0.141 4.141 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.071 0.929 49 H 0.034 0.966 50 H 0.030 0.970 51 H 0.068 0.932 52 H 0.134 0.866 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.455 -6.063 12.679 24.001 hybrid contribution 1.077 -0.181 -0.897 1.414 sum -18.378 -6.245 11.782 22.706 Atomic orbital electron populations 1.21848 0.94573 1.01811 1.01777 1.20099 0.95737 0.96080 0.95487 1.21859 1.01453 0.95104 1.01772 1.19785 0.98139 0.95865 0.94546 1.20964 1.00821 1.00068 0.91989 1.21002 0.95903 0.94314 0.98664 1.19680 0.97566 0.96157 0.93319 1.21438 0.96628 0.91471 0.90584 0.92270 1.22731 0.98408 0.99274 0.95029 1.22835 1.00581 0.98197 0.96506 1.22848 1.00252 0.93673 0.92007 1.63490 1.18809 1.39878 1.01916 1.22447 0.85358 0.98267 1.00817 1.21304 0.99117 0.94505 0.95279 0.92457 1.21565 0.98121 0.97227 1.00892 1.19117 0.88179 0.96546 0.97165 1.21268 0.92569 1.32113 1.08910 0.92560 1.25021 0.96742 0.96343 0.96474 1.69978 1.00721 1.46395 1.36578 0.86589 0.78438 0.80194 0.83117 1.19756 1.21089 1.21141 1.20965 1.00299 1.00089 0.92104 1.20902 0.99014 0.96037 0.98136 0.92427 0.92635 0.92686 0.90828 0.92648 0.92418 0.92351 0.86585 0.85315 0.91197 0.90661 0.91010 0.91656 0.90774 0.91610 0.91346 0.95463 0.94075 0.94190 0.92886 0.96615 0.97043 0.93186 0.86622 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.00 37.16 0.33 -0.77 16 2 C -0.06 -0.49 3.09 -91.77 -0.28 -0.78 16 3 C -0.14 -1.26 9.01 37.15 0.33 -0.93 16 4 C -0.08 -0.92 4.78 -104.63 -0.50 -1.42 16 5 C -0.12 -1.41 8.71 -39.58 -0.34 -1.75 16 6 C -0.08 -1.04 9.24 -39.58 -0.37 -1.41 16 7 C -0.07 -0.86 5.02 -104.63 -0.53 -1.39 16 8 C 0.11 1.39 2.62 -67.34 -0.18 1.21 16 9 H 0.06 0.80 7.62 -51.93 -0.40 0.40 16 10 C -0.12 -1.26 6.49 -24.53 -0.16 -1.42 16 11 C -0.14 -1.57 6.94 -24.84 -0.17 -1.74 16 12 C 0.04 0.54 6.09 -2.84 -0.02 0.53 16 13 N -0.52 -7.66 3.57 -224.75 -0.80 -8.46 16 14 C 0.06 1.05 4.19 -3.82 -0.02 1.03 16 15 C -0.08 -1.72 2.09 -90.61 -0.19 -1.91 16 16 H 0.06 1.19 6.13 -51.93 -0.32 0.87 16 17 C -0.12 -2.39 8.88 37.16 0.33 -2.06 16 18 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 19 C -0.51 -14.41 8.41 -34.44 -0.29 -14.70 16 20 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 21 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 23 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 27 C -0.12 -1.40 9.68 -39.58 -0.38 -1.78 16 28 C -0.12 -1.38 9.67 -39.59 -0.38 -1.76 16 29 H 0.06 0.45 7.37 -51.93 -0.38 0.07 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.61 7.88 -51.93 -0.41 0.20 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.52 7.40 -51.93 -0.38 0.14 16 36 H 0.12 1.20 7.10 -52.49 -0.37 0.82 16 37 H 0.13 1.71 7.70 -52.49 -0.40 1.30 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.81 7.96 -51.93 -0.41 0.40 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.00 6.07 -51.93 -0.31 0.68 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.03 0.50 8.01 -51.93 -0.42 0.08 16 46 H 0.04 0.72 7.72 -51.93 -0.40 0.32 16 47 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.05 1.12 6.95 -51.93 -0.36 0.75 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 52 H 0.12 1.23 8.05 -52.49 -0.42 0.81 16 53 H 0.12 1.08 7.95 -52.48 -0.42 0.66 16 LS Contribution 408.53 15.07 6.16 6.16 Total: -1.00 -29.90 408.53 -11.95 -41.86 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -9.99 Total: -0.93 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -3.03 Total: -28.97 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.07 Total: -34.97 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.90 -11.95 -41.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658278783.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.705 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds