Wall clock time and date at job start Tue Mar 31 2020 10:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47439 * 2 1 4 4 C 1.50698 * 109.47254 * 239.99359 * 2 1 3 5 5 C 1.38235 * 119.99475 * 59.72917 * 4 2 1 6 6 C 1.38243 * 119.99975 * 179.74347 * 5 4 2 7 7 C 1.38238 * 119.99670 * 0.53181 * 6 5 4 8 8 C 1.50693 * 119.99969 * 179.76977 * 7 6 5 9 9 H 1.09002 * 110.33349 * 160.67896 * 8 7 6 10 10 C 1.54909 * 110.37517 * 282.93018 * 8 7 6 11 11 C 1.55259 * 101.59895 * 155.81364 * 10 8 7 12 12 C 1.54318 * 103.08796 * 324.49296 * 11 10 8 13 13 N 1.47440 * 107.23265 * 22.20241 * 12 11 10 14 14 C 1.46897 * 110.99967 * 123.26005 * 13 12 11 15 15 C 1.53005 * 109.47522 * 55.69036 * 14 13 12 16 16 H 1.08996 * 109.46858 * 304.03979 * 15 14 13 17 17 C 1.53005 * 109.46679 * 64.03271 * 15 14 13 18 18 C 1.52999 * 109.47234 * 184.03325 * 15 14 13 19 19 C 1.50704 * 109.46856 * 175.00169 * 18 15 14 20 20 H 1.08001 * 119.99903 * 0.02562 * 19 18 15 21 21 C 1.37875 * 119.99754 * 179.97438 * 19 18 15 22 22 N 1.31510 * 120.00226 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99715 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47079 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.46832 * 119.99846 * 23 21 19 26 26 H 1.48498 * 109.47126 * 240.00132 * 23 21 19 27 27 C 1.38236 * 119.99931 * 359.74381 * 7 6 5 28 28 C 1.38231 * 120.00606 * 240.00432 * 4 2 1 29 29 H 1.09001 * 109.46841 * 60.00028 * 1 2 3 30 30 H 1.08994 * 109.47005 * 300.00646 * 1 2 3 31 31 H 1.08998 * 109.47362 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46841 * 119.99972 * 2 1 3 33 33 H 1.09004 * 109.47549 * 59.99545 * 3 2 1 34 34 H 1.09005 * 109.47170 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47081 * 299.99824 * 3 2 1 36 36 H 1.08001 * 120.00194 * 0.02562 * 5 4 2 37 37 H 1.07994 * 120.00337 * 180.29885 * 6 5 4 38 38 H 1.08995 * 110.99002 * 273.99433 * 10 8 7 39 39 H 1.09005 * 110.98453 * 37.81029 * 10 8 7 40 40 H 1.08998 * 110.74450 * 206.05209 * 11 10 8 41 41 H 1.09000 * 110.75214 * 82.93469 * 11 10 8 42 42 H 1.08995 * 109.88408 * 262.79411 * 12 11 10 43 43 H 1.09004 * 109.88606 * 141.60849 * 12 11 10 44 44 H 1.09003 * 109.47465 * 175.69636 * 14 13 12 45 45 H 1.09005 * 109.47364 * 295.69187 * 14 13 12 46 46 H 1.08998 * 109.47050 * 300.00624 * 17 15 14 47 47 H 1.09001 * 109.46805 * 59.99828 * 17 15 14 48 48 H 1.08996 * 109.46999 * 180.02562 * 17 15 14 49 49 H 1.08997 * 109.46869 * 294.99819 * 18 15 14 50 50 H 1.08992 * 109.46929 * 55.00497 * 18 15 14 51 51 H 0.97003 * 120.00110 * 179.97438 * 22 21 19 52 52 H 1.08001 * 120.00167 * 180.02562 * 27 7 6 53 53 H 1.08006 * 119.99653 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6938 -0.2416 -2.4859 6 6 2.1589 -0.8902 -3.6146 7 6 2.9536 -2.0142 -3.4877 8 6 3.4564 -2.7243 -4.7181 9 1 4.3133 -3.3507 -4.4703 10 6 2.3276 -3.5789 -5.3467 11 6 2.7971 -3.6788 -6.8232 12 6 3.4446 -2.3013 -7.0780 13 7 3.8198 -1.7455 -5.7649 14 6 5.2539 -1.4312 -5.7167 15 6 5.6076 -0.4846 -6.8655 16 1 5.3064 -0.9335 -7.8120 17 6 4.8741 0.8446 -6.6753 18 6 7.1174 -0.2370 -6.8760 19 6 7.4816 0.5951 -8.0786 20 1 6.7130 0.9156 -8.7663 21 6 8.7959 0.9480 -8.3002 22 7 9.7316 0.5590 -7.4619 23 14 9.2473 1.9800 -9.7904 24 1 8.0213 2.2856 -10.5706 25 1 9.8781 3.2473 -9.3421 26 1 10.2013 1.2268 -10.6435 27 6 3.2875 -2.4864 -2.2322 28 6 2.8270 -1.8345 -1.1035 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.0696 0.6342 -2.5850 37 1 1.8984 -0.5210 -4.5955 38 1 2.2794 -4.5641 -4.8829 39 1 1.3668 -3.0687 -5.2770 40 1 1.9480 -3.8345 -7.4887 41 1 3.5297 -4.4770 -6.9424 42 1 2.7302 -1.6412 -7.5697 43 1 4.3329 -2.4183 -7.6987 44 1 5.4893 -0.9527 -4.7660 45 1 5.8310 -2.3510 -5.8131 46 1 3.7985 0.6681 -6.6677 47 1 5.1752 1.2934 -5.7287 48 1 5.1256 1.5188 -7.4939 49 1 7.4051 0.2921 -5.9675 50 1 7.6417 -1.1914 -6.9223 51 1 10.6563 0.8070 -7.6180 52 1 3.9087 -3.3643 -2.1330 53 1 3.0876 -2.2037 -0.1225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658278783.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:34 Heat of formation + Delta-G solvation = -17.513865 kcal Electronic energy + Delta-G solvation = -26746.549532 eV Core-core repulsion = 23387.848022 eV Total energy + Delta-G solvation = -3358.701511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.03380 -39.70766 -37.10457 -36.06491 -34.46681 -31.99648 -31.80271 -31.67366 -28.78701 -28.36123 -27.94824 -26.88797 -24.85633 -23.89285 -23.64796 -22.35218 -21.33229 -20.59071 -20.03186 -18.55750 -17.70780 -17.14547 -16.46568 -16.43449 -15.97683 -15.61015 -15.53250 -14.95227 -14.80429 -14.47100 -14.43705 -14.30433 -14.23332 -13.97640 -13.84545 -13.55027 -13.41992 -13.22703 -13.11357 -12.82358 -12.77330 -12.61026 -12.39647 -12.25810 -12.21371 -12.05724 -12.02694 -11.95378 -11.83717 -11.59338 -11.45884 -11.39413 -11.35688 -11.04346 -10.90362 -10.55158 -9.69383 -9.29596 -9.22352 -8.18564 -6.27922 0.51574 0.63513 1.38740 1.39145 1.52337 2.40824 2.84639 3.09703 3.14837 3.66938 3.82800 3.84439 3.93730 4.07398 4.13649 4.20809 4.23276 4.28548 4.31860 4.36742 4.43100 4.50414 4.58976 4.63856 4.69518 4.77990 4.79357 4.83526 4.88074 4.94534 4.99140 5.01026 5.01340 5.03246 5.05683 5.13679 5.14548 5.26234 5.26784 5.30711 5.36450 5.39582 5.41733 5.44788 5.47507 5.53475 5.66150 5.77410 5.81231 5.84549 5.87499 6.14189 6.18063 6.25255 6.31373 6.88033 7.40463 8.93883 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.003036 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.829028 B = 9221.129422 C =10441.841144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 C -0.144 4.144 4 C -0.086 4.086 5 C -0.126 4.126 6 C -0.094 4.094 7 C -0.080 4.080 8 C 0.105 3.895 9 H 0.052 0.948 10 C -0.107 4.107 11 C -0.135 4.135 12 C 0.035 3.965 13 N -0.517 5.517 14 C 0.075 3.925 15 C -0.072 4.072 16 H 0.060 0.940 17 C -0.109 4.109 18 C 0.034 3.966 19 C -0.526 4.526 20 H 0.061 0.939 21 C -0.003 4.003 22 N -0.936 5.936 23 Si 0.961 3.039 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.279 1.279 27 C -0.126 4.126 28 C -0.129 4.129 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.017 0.983 46 H 0.065 0.935 47 H 0.030 0.970 48 H 0.038 0.962 49 H -0.014 1.014 50 H -0.017 1.017 51 H 0.262 0.738 52 H 0.125 0.875 53 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.370 -6.553 12.621 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.144 4.144 6 C -0.112 4.112 7 C -0.081 4.081 8 C -0.003 4.003 9 H 0.070 0.930 10 C -0.145 4.145 11 C -0.173 4.173 12 C -0.093 4.093 13 N -0.240 5.240 14 C -0.053 4.053 15 C -0.091 4.091 16 H 0.078 0.922 17 C -0.166 4.166 18 C -0.003 4.003 19 C -0.564 4.564 20 H 0.079 0.921 21 C -0.200 4.200 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.185 1.185 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.145 4.145 28 C -0.147 4.147 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.084 0.916 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.004 0.996 50 H 0.002 0.998 51 H 0.070 0.930 52 H 0.143 0.857 53 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -21.460 -6.071 12.720 25.674 hybrid contribution 1.694 -0.193 -0.842 1.902 sum -19.765 -6.264 11.878 23.896 Atomic orbital electron populations 1.21823 0.93517 1.01956 1.02400 1.20148 0.96567 0.95863 0.94725 1.21855 1.00638 0.95228 1.02397 1.20082 0.97561 0.95738 0.95186 1.21133 1.00913 1.00357 0.92025 1.21023 0.96617 0.94737 0.98815 1.19729 0.98186 0.96597 0.93579 1.21501 0.97229 0.91258 0.90304 0.93032 1.22699 0.97503 0.99669 0.94596 1.22796 1.01108 0.96329 0.97052 1.22909 0.99779 0.95598 0.90975 1.63452 1.15988 1.41309 1.03269 1.22091 0.87581 0.96974 0.98692 1.21099 0.95469 0.95892 0.96639 0.92212 1.21440 0.99409 0.96049 0.99722 1.18994 0.91681 0.94383 0.95278 1.21640 0.93001 1.32253 1.09506 0.92054 1.25967 0.96719 0.97639 0.99701 1.70114 1.01203 1.47736 1.38656 0.85449 0.78474 0.78293 0.79168 1.18472 1.20556 1.20467 1.21163 1.00520 1.00652 0.92121 1.21190 0.98695 0.96025 0.98784 0.92645 0.91202 0.92776 0.89943 0.91027 0.93667 0.92759 0.85513 0.86001 0.89472 0.90279 0.88905 0.91548 0.90137 0.93492 0.92775 0.96460 0.91587 0.95083 0.94294 0.99596 0.99820 0.92951 0.85676 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.00 71.98 0.65 -1.22 16 2 C -0.05 -0.87 3.09 -11.54 -0.04 -0.91 16 3 C -0.14 -2.31 9.01 71.98 0.65 -1.66 16 4 C -0.09 -1.78 4.78 -19.87 -0.09 -1.88 16 5 C -0.13 -2.85 8.71 22.27 0.19 -2.65 16 6 C -0.09 -2.37 9.24 22.27 0.21 -2.16 16 7 C -0.08 -2.04 5.02 -19.87 -0.10 -2.14 16 8 C 0.11 2.67 2.62 44.64 0.12 2.78 16 9 H 0.05 1.39 7.62 -2.39 -0.02 1.37 16 10 C -0.11 -2.11 6.49 32.02 0.21 -1.90 16 11 C -0.13 -2.70 6.94 31.82 0.22 -2.48 16 12 C 0.03 0.92 6.09 86.65 0.53 1.45 16 13 N -0.52 -15.19 3.57 -864.99 -3.09 -18.28 16 14 C 0.07 2.76 4.19 86.31 0.36 3.12 16 15 C -0.07 -3.06 2.09 -10.79 -0.02 -3.08 16 16 H 0.06 2.51 6.13 -2.39 -0.01 2.50 16 17 C -0.11 -4.33 8.88 71.98 0.64 -3.69 16 18 C 0.03 1.86 4.45 29.85 0.13 1.99 16 19 C -0.53 -30.29 8.41 25.60 0.22 -30.08 16 20 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 21 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 22 N -0.94 -58.25 13.29 21.45 0.28 -57.96 16 23 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 27 C -0.13 -2.94 9.68 22.27 0.22 -2.73 16 28 C -0.13 -2.74 9.67 22.27 0.22 -2.53 16 29 H 0.05 0.76 7.37 -2.39 -0.02 0.75 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.18 7.88 -2.39 -0.02 1.16 16 33 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.05 0.90 7.40 -2.39 -0.02 0.89 16 36 H 0.13 2.49 7.10 -2.91 -0.02 2.47 16 37 H 0.12 3.18 7.70 -2.91 -0.02 3.15 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.53 7.96 -2.38 -0.02 1.51 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.05 1.42 6.07 -2.39 -0.01 1.40 16 44 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.02 0.66 8.01 -2.38 -0.02 0.64 16 46 H 0.07 2.28 7.72 -2.39 -0.02 2.26 16 47 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 48 H 0.04 1.63 6.95 -2.39 -0.02 1.61 16 49 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 50 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 51 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 52 H 0.13 2.58 8.05 -2.91 -0.02 2.55 16 53 H 0.13 2.27 7.95 -2.91 -0.02 2.24 16 Total: -1.00 -65.27 408.53 4.81 -60.45 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.83 Total: 18.14 kcal Atomic # 6 Polarization: -54.25 SS G_CDS: 4.76 Total: -49.49 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -2.80 Total: -76.24 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.27 4.81 -60.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658278783.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.939 kcal (2) G-P(sol) polarization free energy of solvation -65.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds