Wall clock time and date at job start Tue Mar 31 2020 10:45:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52994 * 109.47439 * 2 1
4 4 C 1.50698 * 109.47254 * 239.99359 * 2 1 3
5 5 C 1.38235 * 119.99475 * 59.72917 * 4 2 1
6 6 C 1.38243 * 119.99975 * 179.74347 * 5 4 2
7 7 C 1.38238 * 119.99670 * 0.53181 * 6 5 4
8 8 C 1.50693 * 119.99969 * 179.76977 * 7 6 5
9 9 H 1.09002 * 110.33349 * 160.67896 * 8 7 6
10 10 C 1.54909 * 110.37517 * 282.93018 * 8 7 6
11 11 C 1.55259 * 101.59895 * 155.81364 * 10 8 7
12 12 C 1.54318 * 103.08796 * 324.49296 * 11 10 8
13 13 N 1.47440 * 107.23265 * 22.20241 * 12 11 10
14 14 C 1.46897 * 110.99967 * 123.26005 * 13 12 11
15 15 C 1.53005 * 109.47522 * 55.69036 * 14 13 12
16 16 H 1.08996 * 109.46858 * 304.03979 * 15 14 13
17 17 C 1.53005 * 109.46679 * 64.03271 * 15 14 13
18 18 C 1.52999 * 109.47234 * 184.03325 * 15 14 13
19 19 C 1.50704 * 109.46856 * 175.00169 * 18 15 14
20 20 H 1.08001 * 119.99903 * 0.02562 * 19 18 15
21 21 C 1.37875 * 119.99754 * 179.97438 * 19 18 15
22 22 N 1.31510 * 120.00226 * 359.97438 * 21 19 18
23 23 Si 1.86805 * 119.99715 * 180.02562 * 21 19 18
24 24 H 1.48496 * 109.47079 * 359.97438 * 23 21 19
25 25 H 1.48494 * 109.46832 * 119.99846 * 23 21 19
26 26 H 1.48498 * 109.47126 * 240.00132 * 23 21 19
27 27 C 1.38236 * 119.99931 * 359.74381 * 7 6 5
28 28 C 1.38231 * 120.00606 * 240.00432 * 4 2 1
29 29 H 1.09001 * 109.46841 * 60.00028 * 1 2 3
30 30 H 1.08994 * 109.47005 * 300.00646 * 1 2 3
31 31 H 1.08998 * 109.47362 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.46841 * 119.99972 * 2 1 3
33 33 H 1.09004 * 109.47549 * 59.99545 * 3 2 1
34 34 H 1.09005 * 109.47170 * 179.97438 * 3 2 1
35 35 H 1.09001 * 109.47081 * 299.99824 * 3 2 1
36 36 H 1.08001 * 120.00194 * 0.02562 * 5 4 2
37 37 H 1.07994 * 120.00337 * 180.29885 * 6 5 4
38 38 H 1.08995 * 110.99002 * 273.99433 * 10 8 7
39 39 H 1.09005 * 110.98453 * 37.81029 * 10 8 7
40 40 H 1.08998 * 110.74450 * 206.05209 * 11 10 8
41 41 H 1.09000 * 110.75214 * 82.93469 * 11 10 8
42 42 H 1.08995 * 109.88408 * 262.79411 * 12 11 10
43 43 H 1.09004 * 109.88606 * 141.60849 * 12 11 10
44 44 H 1.09003 * 109.47465 * 175.69636 * 14 13 12
45 45 H 1.09005 * 109.47364 * 295.69187 * 14 13 12
46 46 H 1.08998 * 109.47050 * 300.00624 * 17 15 14
47 47 H 1.09001 * 109.46805 * 59.99828 * 17 15 14
48 48 H 1.08996 * 109.46999 * 180.02562 * 17 15 14
49 49 H 1.08997 * 109.46869 * 294.99819 * 18 15 14
50 50 H 1.08992 * 109.46929 * 55.00497 * 18 15 14
51 51 H 0.97003 * 120.00110 * 179.97438 * 22 21 19
52 52 H 1.08001 * 120.00167 * 180.02562 * 27 7 6
53 53 H 1.08006 * 119.99653 * 0.02562 * 28 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0324 -0.7105 -1.2304
5 6 1.6938 -0.2416 -2.4859
6 6 2.1589 -0.8902 -3.6146
7 6 2.9536 -2.0142 -3.4877
8 6 3.4564 -2.7243 -4.7181
9 1 4.3133 -3.3507 -4.4703
10 6 2.3276 -3.5789 -5.3467
11 6 2.7971 -3.6788 -6.8232
12 6 3.4446 -2.3013 -7.0780
13 7 3.8198 -1.7455 -5.7649
14 6 5.2539 -1.4312 -5.7167
15 6 5.6076 -0.4846 -6.8655
16 1 5.3064 -0.9335 -7.8120
17 6 4.8741 0.8446 -6.6753
18 6 7.1174 -0.2370 -6.8760
19 6 7.4816 0.5951 -8.0786
20 1 6.7130 0.9156 -8.7663
21 6 8.7959 0.9480 -8.3002
22 7 9.7316 0.5590 -7.4619
23 14 9.2473 1.9800 -9.7904
24 1 8.0213 2.2856 -10.5706
25 1 9.8781 3.2473 -9.3421
26 1 10.2013 1.2268 -10.6435
27 6 3.2875 -2.4864 -2.2322
28 6 2.8270 -1.8345 -1.1035
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 0.5139 0.8899
31 1 -0.3634 -1.0276 -0.0005
32 1 1.8933 -0.5138 0.8900
33 1 1.6767 1.9564 0.8900
34 1 3.1301 1.4424 0.0005
35 1 1.6768 1.9563 -0.8900
36 1 1.0696 0.6342 -2.5850
37 1 1.8984 -0.5210 -4.5955
38 1 2.2794 -4.5641 -4.8829
39 1 1.3668 -3.0687 -5.2770
40 1 1.9480 -3.8345 -7.4887
41 1 3.5297 -4.4770 -6.9424
42 1 2.7302 -1.6412 -7.5697
43 1 4.3329 -2.4183 -7.6987
44 1 5.4893 -0.9527 -4.7660
45 1 5.8310 -2.3510 -5.8131
46 1 3.7985 0.6681 -6.6677
47 1 5.1752 1.2934 -5.7287
48 1 5.1256 1.5188 -7.4939
49 1 7.4051 0.2921 -5.9675
50 1 7.6417 -1.1914 -6.9223
51 1 10.6563 0.8070 -7.6180
52 1 3.9087 -3.3643 -2.1330
53 1 3.0876 -2.2037 -0.1225
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001658278783.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:45:34
Heat of formation + Delta-G solvation = -17.513865 kcal
Electronic energy + Delta-G solvation = -26746.549532 eV
Core-core repulsion = 23387.848022 eV
Total energy + Delta-G solvation = -3358.701511 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 315.226 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.03380 -39.70766 -37.10457 -36.06491 -34.46681 -31.99648 -31.80271 -31.67366
-28.78701 -28.36123 -27.94824 -26.88797 -24.85633 -23.89285 -23.64796 -22.35218
-21.33229 -20.59071 -20.03186 -18.55750 -17.70780 -17.14547 -16.46568 -16.43449
-15.97683 -15.61015 -15.53250 -14.95227 -14.80429 -14.47100 -14.43705 -14.30433
-14.23332 -13.97640 -13.84545 -13.55027 -13.41992 -13.22703 -13.11357 -12.82358
-12.77330 -12.61026 -12.39647 -12.25810 -12.21371 -12.05724 -12.02694 -11.95378
-11.83717 -11.59338 -11.45884 -11.39413 -11.35688 -11.04346 -10.90362 -10.55158
-9.69383 -9.29596 -9.22352 -8.18564 -6.27922 0.51574 0.63513 1.38740
1.39145 1.52337 2.40824 2.84639 3.09703 3.14837 3.66938 3.82800
3.84439 3.93730 4.07398 4.13649 4.20809 4.23276 4.28548 4.31860
4.36742 4.43100 4.50414 4.58976 4.63856 4.69518 4.77990 4.79357
4.83526 4.88074 4.94534 4.99140 5.01026 5.01340 5.03246 5.05683
5.13679 5.14548 5.26234 5.26784 5.30711 5.36450 5.39582 5.41733
5.44788 5.47507 5.53475 5.66150 5.77410 5.81231 5.84549 5.87499
6.14189 6.18063 6.25255 6.31373 6.88033 7.40463 8.93883
Molecular weight = 315.23amu
Principal moments of inertia in cm(-1)
A = 0.013764 B = 0.003036 C = 0.002681
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2033.829028 B = 9221.129422 C =10441.841144
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.055 4.055
3 C -0.144 4.144
4 C -0.086 4.086
5 C -0.126 4.126
6 C -0.094 4.094
7 C -0.080 4.080
8 C 0.105 3.895
9 H 0.052 0.948
10 C -0.107 4.107
11 C -0.135 4.135
12 C 0.035 3.965
13 N -0.517 5.517
14 C 0.075 3.925
15 C -0.072 4.072
16 H 0.060 0.940
17 C -0.109 4.109
18 C 0.034 3.966
19 C -0.526 4.526
20 H 0.061 0.939
21 C -0.003 4.003
22 N -0.936 5.936
23 Si 0.961 3.039
24 H -0.261 1.261
25 H -0.280 1.280
26 H -0.279 1.279
27 C -0.126 4.126
28 C -0.129 4.129
29 H 0.054 0.946
30 H 0.069 0.931
31 H 0.053 0.947
32 H 0.082 0.918
33 H 0.071 0.929
34 H 0.044 0.956
35 H 0.053 0.947
36 H 0.127 0.873
37 H 0.122 0.878
38 H 0.087 0.913
39 H 0.079 0.921
40 H 0.092 0.908
41 H 0.066 0.934
42 H 0.080 0.920
43 H 0.047 0.953
44 H 0.054 0.946
45 H 0.017 0.983
46 H 0.065 0.935
47 H 0.030 0.970
48 H 0.038 0.962
49 H -0.014 1.014
50 H -0.017 1.017
51 H 0.262 0.738
52 H 0.125 0.875
53 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.370 -6.553 12.621 25.669
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.073 4.073
3 C -0.201 4.201
4 C -0.086 4.086
5 C -0.144 4.144
6 C -0.112 4.112
7 C -0.081 4.081
8 C -0.003 4.003
9 H 0.070 0.930
10 C -0.145 4.145
11 C -0.173 4.173
12 C -0.093 4.093
13 N -0.240 5.240
14 C -0.053 4.053
15 C -0.091 4.091
16 H 0.078 0.922
17 C -0.166 4.166
18 C -0.003 4.003
19 C -0.564 4.564
20 H 0.079 0.921
21 C -0.200 4.200
22 N -0.577 5.577
23 Si 0.786 3.214
24 H -0.185 1.185
25 H -0.206 1.206
26 H -0.205 1.205
27 C -0.145 4.145
28 C -0.147 4.147
29 H 0.074 0.926
30 H 0.088 0.912
31 H 0.072 0.928
32 H 0.101 0.899
33 H 0.090 0.910
34 H 0.063 0.937
35 H 0.072 0.928
36 H 0.145 0.855
37 H 0.140 0.860
38 H 0.105 0.895
39 H 0.097 0.903
40 H 0.111 0.889
41 H 0.085 0.915
42 H 0.099 0.901
43 H 0.065 0.935
44 H 0.072 0.928
45 H 0.035 0.965
46 H 0.084 0.916
47 H 0.049 0.951
48 H 0.057 0.943
49 H 0.004 0.996
50 H 0.002 0.998
51 H 0.070 0.930
52 H 0.143 0.857
53 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -21.460 -6.071 12.720 25.674
hybrid contribution 1.694 -0.193 -0.842 1.902
sum -19.765 -6.264 11.878 23.896
Atomic orbital electron populations
1.21823 0.93517 1.01956 1.02400 1.20148 0.96567 0.95863 0.94725
1.21855 1.00638 0.95228 1.02397 1.20082 0.97561 0.95738 0.95186
1.21133 1.00913 1.00357 0.92025 1.21023 0.96617 0.94737 0.98815
1.19729 0.98186 0.96597 0.93579 1.21501 0.97229 0.91258 0.90304
0.93032 1.22699 0.97503 0.99669 0.94596 1.22796 1.01108 0.96329
0.97052 1.22909 0.99779 0.95598 0.90975 1.63452 1.15988 1.41309
1.03269 1.22091 0.87581 0.96974 0.98692 1.21099 0.95469 0.95892
0.96639 0.92212 1.21440 0.99409 0.96049 0.99722 1.18994 0.91681
0.94383 0.95278 1.21640 0.93001 1.32253 1.09506 0.92054 1.25967
0.96719 0.97639 0.99701 1.70114 1.01203 1.47736 1.38656 0.85449
0.78474 0.78293 0.79168 1.18472 1.20556 1.20467 1.21163 1.00520
1.00652 0.92121 1.21190 0.98695 0.96025 0.98784 0.92645 0.91202
0.92776 0.89943 0.91027 0.93667 0.92759 0.85513 0.86001 0.89472
0.90279 0.88905 0.91548 0.90137 0.93492 0.92775 0.96460 0.91587
0.95083 0.94294 0.99596 0.99820 0.92951 0.85676 0.84819
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.87 9.00 71.98 0.65 -1.22 16
2 C -0.05 -0.87 3.09 -11.54 -0.04 -0.91 16
3 C -0.14 -2.31 9.01 71.98 0.65 -1.66 16
4 C -0.09 -1.78 4.78 -19.87 -0.09 -1.88 16
5 C -0.13 -2.85 8.71 22.27 0.19 -2.65 16
6 C -0.09 -2.37 9.24 22.27 0.21 -2.16 16
7 C -0.08 -2.04 5.02 -19.87 -0.10 -2.14 16
8 C 0.11 2.67 2.62 44.64 0.12 2.78 16
9 H 0.05 1.39 7.62 -2.39 -0.02 1.37 16
10 C -0.11 -2.11 6.49 32.02 0.21 -1.90 16
11 C -0.13 -2.70 6.94 31.82 0.22 -2.48 16
12 C 0.03 0.92 6.09 86.65 0.53 1.45 16
13 N -0.52 -15.19 3.57 -864.99 -3.09 -18.28 16
14 C 0.07 2.76 4.19 86.31 0.36 3.12 16
15 C -0.07 -3.06 2.09 -10.79 -0.02 -3.08 16
16 H 0.06 2.51 6.13 -2.39 -0.01 2.50 16
17 C -0.11 -4.33 8.88 71.98 0.64 -3.69 16
18 C 0.03 1.86 4.45 29.85 0.13 1.99 16
19 C -0.53 -30.29 8.41 25.60 0.22 -30.08 16
20 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16
21 C 0.00 -0.19 5.46 84.65 0.46 0.28 16
22 N -0.94 -58.25 13.29 21.45 0.28 -57.96 16
23 Si 0.96 45.11 29.54 68.60 2.03 47.14 16
24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16
25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16
26 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
27 C -0.13 -2.94 9.68 22.27 0.22 -2.73 16
28 C -0.13 -2.74 9.67 22.27 0.22 -2.53 16
29 H 0.05 0.76 7.37 -2.39 -0.02 0.75 16
30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
31 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16
32 H 0.08 1.18 7.88 -2.39 -0.02 1.16 16
33 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16
34 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16
35 H 0.05 0.90 7.40 -2.39 -0.02 0.89 16
36 H 0.13 2.49 7.10 -2.91 -0.02 2.47 16
37 H 0.12 3.18 7.70 -2.91 -0.02 3.15 16
38 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16
39 H 0.08 1.53 7.96 -2.38 -0.02 1.51 16
40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
41 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16
42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
43 H 0.05 1.42 6.07 -2.39 -0.01 1.40 16
44 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16
45 H 0.02 0.66 8.01 -2.38 -0.02 0.64 16
46 H 0.07 2.28 7.72 -2.39 -0.02 2.26 16
47 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16
48 H 0.04 1.63 6.95 -2.39 -0.02 1.61 16
49 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16
50 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16
51 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16
52 H 0.13 2.58 8.05 -2.91 -0.02 2.55 16
53 H 0.13 2.27 7.95 -2.91 -0.02 2.24 16
Total: -1.00 -65.27 408.53 4.81 -60.45
By element:
Atomic # 1 Polarization: 17.30 SS G_CDS: 0.83 Total: 18.14 kcal
Atomic # 6 Polarization: -54.25 SS G_CDS: 4.76 Total: -49.49 kcal
Atomic # 7 Polarization: -73.44 SS G_CDS: -2.80 Total: -76.24 kcal
Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal
Total: -65.27 4.81 -60.45 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001658278783.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.939 kcal
(2) G-P(sol) polarization free energy of solvation -65.267 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.328 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.453 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.514 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds