Wall clock time and date at job start Tue Mar 31 2020 10:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47171 * 2 1 4 4 C 1.52998 * 109.46964 * 239.99924 * 2 1 3 5 5 C 1.50698 * 109.47444 * 65.00110 * 4 2 1 6 6 H 1.08000 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00152 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99901 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99921 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47167 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47176 * 119.99914 * 9 7 5 12 12 H 1.48506 * 109.47047 * 239.99629 * 9 7 5 13 13 C 1.53001 * 109.47016 * 119.99906 * 2 1 3 14 14 N 1.46905 * 109.47220 * 294.99896 * 13 2 1 15 15 C 1.46897 * 110.99851 * 180.02562 * 14 13 2 16 16 C 1.50706 * 109.46883 * 180.02562 * 15 14 13 17 17 C 1.38228 * 119.99983 * 270.21343 * 16 15 14 18 18 C 1.38238 * 120.00110 * 180.21781 * 17 16 15 19 19 C 1.38234 * 119.99675 * 359.52133 * 18 17 16 20 20 C 1.50702 * 120.00257 * 180.25732 * 19 18 17 21 21 C 1.52997 * 109.47684 * 240.00566 * 20 19 18 22 22 C 1.52999 * 109.47316 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.46755 * 60.00029 * 22 21 20 24 24 C 1.53002 * 109.47544 * 299.99518 * 23 22 21 25 25 C 1.53003 * 109.46882 * 119.99869 * 20 19 18 26 26 C 1.38235 * 120.00220 * 0.28720 * 19 18 17 27 27 C 1.38234 * 119.99892 * 89.99563 * 16 15 14 28 28 H 1.08997 * 109.46810 * 299.99840 * 1 2 3 29 29 H 1.08993 * 109.46940 * 60.00237 * 1 2 3 30 30 H 1.09004 * 109.46834 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46728 * 185.00217 * 4 2 1 32 32 H 1.09004 * 109.47441 * 304.99382 * 4 2 1 33 33 H 0.97001 * 119.99895 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.46989 * 174.99931 * 13 2 1 35 35 H 1.08995 * 109.47200 * 54.99997 * 13 2 1 36 36 H 1.00905 * 110.99973 * 303.95992 * 14 13 2 37 37 H 1.08998 * 109.47300 * 60.00329 * 15 14 13 38 38 H 1.08992 * 109.47124 * 299.99509 * 15 14 13 39 39 H 1.08004 * 120.00281 * 0.02562 * 17 16 15 40 40 H 1.08002 * 120.00519 * 179.80752 * 18 17 16 41 41 H 1.09005 * 109.46948 * 0.02562 * 20 19 18 42 42 H 1.09005 * 109.46774 * 299.99911 * 21 20 19 43 43 H 1.09003 * 109.47075 * 59.99726 * 21 20 19 44 44 H 1.08995 * 109.47226 * 299.99813 * 22 21 20 45 45 H 1.08999 * 109.46699 * 179.97438 * 22 21 20 46 46 H 1.09006 * 109.46808 * 179.97438 * 23 22 21 47 47 H 1.08997 * 109.47685 * 60.00388 * 23 22 21 48 48 H 1.08997 * 109.47339 * 300.01081 * 24 23 22 49 49 H 1.08990 * 109.47523 * 180.02562 * 24 23 22 50 50 H 1.08991 * 109.47468 * 300.00189 * 25 20 19 51 51 H 1.08997 * 109.46759 * 60.01326 * 25 20 19 52 52 H 1.07996 * 120.00471 * 179.97438 * 26 19 18 53 53 H 1.08001 * 120.00324 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4024 -3.7283 8 7 2.6755 -1.5194 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 0.7424 1.7743 -4.8434 11 1 2.7172 0.9665 -5.9966 12 1 0.6441 -0.2858 -6.1184 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0375 2.4457 15 6 2.1258 -0.6265 3.6672 16 6 1.7087 0.1787 4.8709 17 6 2.5379 1.1706 5.3600 18 6 2.1574 1.9062 6.4668 19 6 0.9432 1.6564 7.0785 20 6 0.5257 2.4622 8.2817 21 6 0.3177 1.5271 9.4747 22 6 -0.1056 2.3453 10.6963 23 6 -1.4123 3.0798 10.3902 24 6 -1.2044 4.0150 9.1972 25 6 -0.7812 3.1964 7.9752 26 6 0.1122 0.6671 6.5870 27 6 0.4949 -0.0717 5.4831 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1264 -0.7995 -1.2055 32 1 1.6055 -1.7199 -1.2951 33 1 2.9228 -1.8424 -4.7317 34 1 3.1264 -0.7995 1.2056 35 1 1.6054 -1.7197 1.2952 36 1 1.9881 0.9874 2.3967 37 1 3.2127 -0.7036 3.6401 38 1 1.6921 -1.6244 3.7301 39 1 3.4845 1.3689 4.8793 40 1 2.8066 2.6791 6.8509 41 1 1.3028 3.1884 8.5201 42 1 -0.4596 0.8011 9.2360 43 1 1.2488 1.0040 9.6930 44 1 0.6719 3.0709 10.9347 45 1 -0.2542 1.6790 11.5460 46 1 -1.7141 3.6624 11.2607 47 1 -2.1899 2.3542 10.1518 48 1 -0.4268 4.7407 9.4356 49 1 -2.1351 4.5387 8.9795 50 1 -0.6330 3.8626 7.1254 51 1 -1.5585 2.4704 7.7367 52 1 -0.8363 0.4717 7.0652 53 1 -0.1544 -0.8446 5.0991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659855578.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:09 Heat of formation + Delta-G solvation = -28.964711 kcal Electronic energy + Delta-G solvation = -25310.359898 eV Core-core repulsion = 21951.161842 eV Total energy + Delta-G solvation = -3359.198057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.12999 -38.33316 -36.72819 -34.37986 -32.77133 -31.70170 -31.08337 -31.00004 -29.30492 -26.86513 -25.90230 -24.29515 -22.95869 -22.89398 -22.58639 -22.01858 -20.74005 -19.75339 -19.07476 -16.67206 -16.30574 -15.84177 -15.66766 -15.00670 -14.81821 -14.63868 -14.52948 -14.27139 -14.15984 -14.06622 -13.63878 -13.43022 -13.30381 -12.84584 -12.53256 -12.44480 -12.31423 -12.08916 -12.00991 -11.55095 -11.48964 -11.48812 -11.31982 -11.26288 -11.05495 -10.84322 -10.73266 -10.69240 -10.47922 -10.35227 -10.26832 -10.18743 -9.67807 -9.15880 -8.95478 -8.94020 -8.60086 -8.31567 -8.07527 -5.96180 -3.97074 1.25724 1.37192 3.33122 3.40649 3.45016 3.64654 4.25376 4.36276 4.46385 4.48308 4.62490 4.70902 4.85112 4.89309 4.93718 4.94804 4.99203 5.15304 5.16777 5.19888 5.29411 5.34015 5.39619 5.40067 5.48532 5.60063 5.63699 5.67908 5.76702 5.77820 5.79177 5.79425 5.86609 5.91308 6.00088 6.01845 6.03551 6.10472 6.18347 6.36915 6.43546 6.54951 6.57630 6.62580 6.72051 6.95127 7.03873 7.21142 7.22209 7.37728 7.66093 7.72225 7.87553 8.04350 8.48618 9.09583 9.66269 11.15382 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.028544 B = 0.001833 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.716964 B =15274.649202 C =15751.641075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.681 5.681 15 C 0.095 3.905 16 C -0.078 4.078 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.081 4.081 20 C -0.045 4.045 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.095 4.095 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.012 0.988 32 H 0.016 0.984 33 H 0.258 0.742 34 H 0.024 0.976 35 H 0.066 0.934 36 H 0.338 0.662 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.118 0.882 53 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.594 7.340 30.512 31.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.312 5.312 15 C -0.034 4.034 16 C -0.079 4.079 17 C -0.131 4.131 18 C -0.137 4.137 19 C -0.081 4.081 20 C -0.063 4.063 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.134 4.134 27 C -0.114 4.114 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.155 0.845 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.082 0.918 51 H 0.083 0.917 52 H 0.136 0.864 53 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.145 6.928 30.401 31.602 hybrid contribution 0.828 0.594 -1.072 1.479 sum -4.317 7.522 29.329 30.585 Atomic orbital electron populations 1.21585 0.95716 1.00538 1.00151 1.21199 0.96029 0.98898 0.93985 0.92868 1.19132 0.95908 0.95595 0.90457 1.21283 1.34432 1.08271 0.90979 0.92503 1.25029 0.95380 0.95114 0.99117 1.69979 1.39214 1.21268 1.23232 0.86571 0.78222 0.80142 0.83280 1.19751 1.21137 1.21091 1.22182 0.97189 0.97755 0.89402 1.60597 1.63912 1.05753 1.00946 1.20891 0.97330 0.97292 0.87868 1.19853 0.94754 0.96847 0.96424 1.21040 0.99670 0.95818 0.96573 1.20969 0.96275 1.00007 0.96434 1.19798 0.94599 0.96834 0.96904 1.20146 0.97821 0.96172 0.92198 1.21599 1.01534 0.97648 0.94008 1.21544 0.97512 0.99056 0.97609 1.21549 0.97656 0.98636 0.97974 1.21555 1.01254 0.97882 0.95058 1.21611 0.96555 0.99009 0.97685 1.20932 0.99420 0.96195 0.96862 1.21028 0.95661 0.99571 0.95118 0.93931 0.92799 0.94187 0.96930 0.96538 0.93184 0.95749 0.91501 0.84468 0.94770 0.90441 0.86409 0.86479 0.90707 0.91724 0.91931 0.92049 0.92052 0.92221 0.91998 0.92050 0.91973 0.91761 0.91688 0.86432 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.93 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.48 8.41 -34.44 -0.29 -14.77 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.06 1.10 5.07 -3.82 -0.02 1.08 16 14 N -0.68 -10.13 5.94 -115.06 -0.68 -10.81 16 15 C 0.10 1.21 5.81 -4.97 -0.03 1.18 16 16 C -0.08 -0.93 5.39 -104.62 -0.56 -1.49 16 17 C -0.11 -1.23 9.70 -39.59 -0.38 -1.61 16 18 C -0.12 -1.18 9.67 -39.58 -0.38 -1.57 16 19 C -0.08 -0.77 4.78 -104.62 -0.50 -1.27 16 20 C -0.04 -0.34 2.36 -91.77 -0.22 -0.56 16 21 C -0.11 -0.75 5.02 -26.73 -0.13 -0.89 16 22 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 23 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 24 C -0.12 -0.74 5.93 -26.70 -0.16 -0.90 16 25 C -0.11 -0.81 5.02 -26.70 -0.13 -0.95 16 26 C -0.12 -1.16 8.71 -39.58 -0.34 -1.51 16 27 C -0.10 -1.07 9.70 -39.58 -0.38 -1.46 16 28 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 29 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.34 4.91 8.72 -39.29 -0.34 4.56 16 37 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 38 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 40 H 0.12 0.97 7.95 -52.49 -0.42 0.55 16 41 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 42 H 0.06 0.45 7.39 -51.93 -0.38 0.07 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 52 H 0.12 1.00 7.10 -52.49 -0.37 0.63 16 53 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 411.56 15.07 6.20 6.20 Total: -1.00 -29.87 411.56 -12.92 -42.79 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -10.18 Total: -0.20 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -3.97 Total: -28.41 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.05 Total: -37.26 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -29.87 -12.92 -42.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659855578.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.827 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds