Wall clock time and date at job start Tue Mar 31 2020 10:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47352 * 2 1 4 4 C 1.53008 * 109.46805 * 119.99756 * 2 1 3 5 5 C 1.50707 * 109.46744 * 294.99867 * 4 2 1 6 6 H 1.07997 * 120.00318 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99388 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99544 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00362 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47155 * 270.00115 * 9 7 5 11 11 H 1.48499 * 109.47089 * 30.00113 * 9 7 5 12 12 H 1.48497 * 109.47357 * 150.00016 * 9 7 5 13 13 C 1.52994 * 109.47466 * 239.99445 * 2 1 3 14 14 N 1.46902 * 109.46799 * 64.99951 * 13 2 1 15 15 C 1.46907 * 110.99728 * 174.34273 * 14 13 2 16 16 H 1.08996 * 109.05635 * 175.24042 * 15 14 13 17 17 C 1.52776 * 109.06922 * 56.28689 * 15 14 13 18 18 C 1.52974 * 108.36863 * 147.90862 * 17 15 14 19 19 C 1.53002 * 109.43041 * 300.80437 * 18 17 15 20 20 C 1.53002 * 109.39088 * 180.92372 * 18 17 15 21 21 C 1.52556 * 109.70686 * 60.87453 * 18 17 15 22 22 C 1.53147 * 107.69381 * 33.04774 * 21 18 17 23 23 C 1.50573 * 111.00799 * 266.71555 * 22 21 18 24 24 C 1.38983 * 117.55372 * 229.97986 * 23 22 21 25 25 C 1.37914 * 120.54793 * 182.12562 * 24 23 22 26 26 C 1.38266 * 119.69643 * 359.90395 * 25 24 23 27 27 C 1.37880 * 119.78412 * 359.33521 * 26 25 24 28 28 C 1.37413 * 122.64383 * 50.80269 * 23 22 21 29 29 H 1.08998 * 109.47329 * 300.00820 * 1 2 3 30 30 H 1.09003 * 109.46556 * 60.00128 * 1 2 3 31 31 H 1.08993 * 109.47217 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46849 * 175.00304 * 4 2 1 33 33 H 1.08994 * 109.47543 * 54.99713 * 4 2 1 34 34 H 0.97006 * 119.99642 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47620 * 185.00122 * 13 2 1 36 36 H 1.09002 * 109.46863 * 305.00823 * 13 2 1 37 37 H 1.00892 * 111.00347 * 298.29765 * 14 13 2 38 38 H 1.09008 * 109.68341 * 267.62815 * 17 15 14 39 39 H 1.08998 * 109.68511 * 28.18816 * 17 15 14 40 40 H 1.08996 * 109.46610 * 187.51152 * 19 18 17 41 41 H 1.08994 * 109.46873 * 307.50560 * 19 18 17 42 42 H 1.08996 * 109.47292 * 67.51204 * 19 18 17 43 43 H 1.09002 * 109.46834 * 299.77981 * 20 18 17 44 44 H 1.08994 * 109.47046 * 59.78258 * 20 18 17 45 45 H 1.09008 * 109.46465 * 179.78443 * 20 18 17 46 46 H 1.08998 * 109.81932 * 273.49593 * 21 18 17 47 47 H 1.09004 * 109.86655 * 152.62105 * 21 18 17 48 48 H 1.09006 * 109.17296 * 146.31753 * 22 21 18 49 49 H 1.08996 * 109.13247 * 27.08299 * 22 21 18 50 50 H 1.08007 * 119.72487 * 2.10858 * 24 23 22 51 51 H 1.08003 * 120.15175 * 179.97438 * 25 24 23 52 52 H 1.08009 * 120.10839 * 179.36542 * 26 25 24 53 53 H 1.08001 * 119.69426 * 180.18286 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6412 0.0572 2.4766 6 1 1.0806 0.9748 2.3757 7 6 1.9931 -0.4015 3.7284 8 7 1.6456 0.2781 4.7993 9 14 2.9646 -1.9874 3.9030 10 1 2.0263 -3.1324 4.0197 11 1 3.8268 -2.1738 2.7083 12 1 3.8132 -1.9168 5.1196 13 6 2.0401 -0.7213 -1.2491 14 7 1.6514 0.0373 -2.4456 15 6 2.2379 -0.5526 -3.6564 16 1 1.8629 -0.0191 -4.5298 17 6 1.8188 -2.0187 -3.7508 18 6 1.6975 -2.3912 -5.2295 19 6 0.6596 -1.4878 -5.8985 20 6 1.2557 -3.8510 -5.3510 21 6 3.0468 -2.2103 -5.9179 22 6 4.1387 -2.5397 -4.8958 23 6 4.6064 -1.2967 -4.1861 24 6 5.9761 -1.0696 -4.1225 25 6 6.4743 0.0264 -3.4498 26 6 5.6034 0.9073 -2.8356 27 6 4.2438 0.6911 -2.9117 28 6 3.7388 -0.4083 -3.5977 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.1263 -0.7994 1.2057 33 1 1.6053 -1.7197 1.2954 34 1 1.8935 -0.0445 5.6800 35 1 3.1263 -0.7996 -1.2054 36 1 1.6053 -1.7198 -1.2950 37 1 0.6475 0.1000 -2.5237 38 1 2.5714 -2.6472 -3.2743 39 1 0.8572 -2.1582 -3.2569 40 1 0.4748 -1.8371 -6.9143 41 1 -0.2694 -1.5183 -5.3292 42 1 1.0339 -0.4646 -5.9285 43 1 1.9956 -4.4953 -4.8761 44 1 0.2916 -3.9809 -4.8593 45 1 1.1651 -4.1166 -6.4044 46 1 3.1546 -1.1792 -6.2545 47 1 3.1218 -2.8866 -6.7695 48 1 4.9838 -2.9978 -5.4098 49 1 3.7420 -3.2423 -4.1632 50 1 6.6559 -1.7573 -4.6035 51 1 7.5399 0.1965 -3.4040 52 1 5.9868 1.7622 -2.2983 53 1 3.5647 1.3817 -2.4339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664465906.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:57 Heat of formation + Delta-G solvation = 2.970431 kcal Electronic energy + Delta-G solvation = -27830.489609 eV Core-core repulsion = 24472.676364 eV Total energy + Delta-G solvation = -3357.813245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.85414 -37.93051 -36.92575 -34.33870 -32.88427 -32.14938 -30.41954 -29.14426 -28.05421 -27.58482 -27.19674 -25.57661 -24.40628 -23.00012 -22.17470 -21.41997 -19.92412 -19.14926 -18.45822 -16.93345 -16.27853 -16.10886 -15.84350 -15.02937 -14.93295 -14.58141 -14.33773 -13.98369 -13.81471 -13.56509 -13.40038 -13.05117 -12.81691 -12.74442 -12.57391 -12.36718 -12.25063 -12.15217 -12.10215 -11.84611 -11.66800 -11.61214 -11.43122 -11.01678 -10.91094 -10.75967 -10.70424 -10.61073 -10.56517 -10.35926 -10.21137 -9.75614 -9.69140 -9.39904 -9.02078 -8.57808 -8.48658 -8.45908 -8.14589 -5.99138 -3.95538 1.46921 1.54680 3.33234 3.40874 3.45534 3.87755 4.34540 4.44896 4.49751 4.51814 4.61163 4.75802 4.90256 4.97045 5.11685 5.19907 5.23096 5.28349 5.34822 5.41613 5.44091 5.47214 5.51152 5.54919 5.63210 5.66088 5.69723 5.79876 5.81153 5.83054 5.88637 5.93999 6.00583 6.03736 6.07433 6.10894 6.20278 6.22622 6.25993 6.35549 6.42838 6.53127 6.60894 6.69223 6.75421 6.86288 7.01934 7.11083 7.16616 7.31151 7.38125 7.52821 7.65939 7.86611 8.60847 9.06911 9.64332 11.14377 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.013150 B = 0.003913 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.716434 B = 7153.581992 C = 8012.821829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 H 0.069 0.931 4 C -0.008 4.008 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.266 1.266 12 H -0.289 1.289 13 C 0.060 3.940 14 N -0.682 5.682 15 C 0.124 3.876 16 H 0.093 0.907 17 C -0.143 4.143 18 C -0.065 4.065 19 C -0.145 4.145 20 C -0.141 4.141 21 C -0.105 4.105 22 C -0.085 4.085 23 C -0.077 4.077 24 C -0.130 4.130 25 C -0.122 4.122 26 C -0.131 4.131 27 C -0.089 4.089 28 C -0.069 4.069 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.013 0.987 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.342 0.658 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.080 0.920 50 H 0.114 0.886 51 H 0.116 0.884 52 H 0.119 0.881 53 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 -5.193 -24.908 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 H 0.088 0.912 4 C -0.046 4.046 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.215 1.215 13 C -0.069 4.069 14 N -0.312 5.312 15 C 0.014 3.986 16 H 0.110 0.890 17 C -0.182 4.182 18 C -0.066 4.066 19 C -0.202 4.202 20 C -0.198 4.198 21 C -0.142 4.142 22 C -0.122 4.122 23 C -0.078 4.078 24 C -0.148 4.148 25 C -0.140 4.140 26 C -0.149 4.149 27 C -0.108 4.108 28 C -0.069 4.069 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.161 0.839 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.132 0.868 51 H 0.134 0.866 52 H 0.137 0.863 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.906 -4.712 -24.626 25.375 hybrid contribution 0.103 -1.700 0.327 1.734 sum 4.008 -6.412 -24.300 25.449 Atomic orbital electron populations 1.21736 0.96335 1.00345 1.00761 1.21003 0.95090 1.00040 0.93050 0.91230 1.19592 0.95851 0.95616 0.93521 1.21141 1.35148 1.09499 0.89095 0.90839 1.25015 0.95651 0.96870 0.95981 1.69918 1.47317 1.39307 0.97981 0.86832 0.80718 0.84424 0.77642 1.20462 1.19083 1.21483 1.22188 1.00543 0.94541 0.89621 1.60643 1.15323 1.53617 1.01601 1.20557 0.91001 0.92993 0.94019 0.88967 1.22575 1.01917 0.98167 0.95566 1.20566 0.95212 0.95535 0.95240 1.22002 0.98574 0.99416 1.00209 1.21913 1.01187 0.95365 1.01384 1.21673 0.93299 1.01986 0.97270 1.20750 0.98485 0.95218 0.97771 1.19497 0.93017 0.96195 0.99085 1.21103 0.94468 0.98274 1.00999 1.21044 0.99381 0.95227 0.98384 1.21157 0.93830 0.99782 1.00115 1.21469 0.95141 0.97363 0.96778 1.19549 0.94324 0.94980 0.98047 0.91529 0.94640 0.94249 0.96831 0.97414 0.92882 0.91341 0.95708 0.83902 0.90636 0.91497 0.92764 0.92595 0.92172 0.92683 0.92722 0.92775 0.91421 0.91627 0.91733 0.90159 0.86769 0.86623 0.86306 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.77 37.16 0.33 -2.12 16 2 C -0.07 -1.43 2.55 -90.62 -0.23 -1.66 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 4 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 5 C -0.51 -14.53 8.96 -34.44 -0.31 -14.84 16 6 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 8 N -0.91 -28.19 13.96 55.43 0.77 -27.42 16 9 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 C 0.06 0.97 4.25 -3.83 -0.02 0.95 16 14 N -0.68 -9.08 5.01 -107.97 -0.54 -9.62 16 15 C 0.12 1.44 2.44 -68.88 -0.17 1.27 16 16 H 0.09 1.01 5.42 -51.93 -0.28 0.72 16 17 C -0.14 -1.52 2.71 -26.86 -0.07 -1.60 16 18 C -0.06 -0.56 0.52 -154.75 -0.08 -0.64 16 19 C -0.14 -1.15 7.93 37.16 0.29 -0.86 16 20 C -0.14 -1.13 8.26 37.16 0.31 -0.82 16 21 C -0.10 -0.89 4.68 -26.88 -0.13 -1.02 16 22 C -0.09 -0.82 5.15 -27.87 -0.14 -0.96 16 23 C -0.08 -0.92 5.14 -104.71 -0.54 -1.46 16 24 C -0.13 -1.51 9.56 -39.42 -0.38 -1.89 16 25 C -0.12 -1.46 10.05 -39.69 -0.40 -1.86 16 26 C -0.13 -1.70 10.05 -39.70 -0.40 -2.10 16 27 C -0.09 -1.25 8.09 -39.40 -0.32 -1.56 16 28 C -0.07 -0.88 4.50 -104.52 -0.47 -1.35 16 29 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 30 H 0.03 0.53 6.81 -51.93 -0.35 0.18 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 33 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.07 1.21 6.40 -51.93 -0.33 0.88 16 36 H 0.02 0.40 6.91 -51.93 -0.36 0.04 16 37 H 0.34 4.24 7.28 -39.30 -0.29 3.95 16 38 H 0.08 0.90 5.38 -51.92 -0.28 0.62 16 39 H 0.07 0.75 7.54 -51.93 -0.39 0.36 16 40 H 0.05 0.39 8.13 -51.93 -0.42 -0.04 16 41 H 0.05 0.45 8.13 -51.93 -0.42 0.03 16 42 H 0.06 0.49 6.01 -51.93 -0.31 0.18 16 43 H 0.05 0.45 7.68 -51.93 -0.40 0.05 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.38 8.12 -51.92 -0.42 -0.04 16 46 H 0.07 0.62 7.42 -51.93 -0.39 0.24 16 47 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 48 H 0.06 0.55 7.71 -51.93 -0.40 0.15 16 49 H 0.08 0.82 5.27 -51.93 -0.27 0.54 16 50 H 0.11 1.09 7.82 -52.48 -0.41 0.68 16 51 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 52 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 53 H 0.14 2.04 7.11 -52.49 -0.37 1.67 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -30.16 384.65 -10.86 -41.02 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -9.30 Total: 3.69 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: -2.92 Total: -30.97 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.23 Total: -37.04 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.16 -10.86 -41.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664465906.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.994 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds