Wall clock time and date at job start Tue Mar 31 2020 10:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47352 * 2 1 4 4 C 1.53008 * 109.46805 * 119.99756 * 2 1 3 5 5 C 1.50707 * 109.46744 * 294.99867 * 4 2 1 6 6 H 1.07997 * 120.00318 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99388 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99544 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00362 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47155 * 270.00115 * 9 7 5 11 11 H 1.48499 * 109.47089 * 30.00113 * 9 7 5 12 12 H 1.48497 * 109.47357 * 150.00016 * 9 7 5 13 13 C 1.52994 * 109.47466 * 239.99445 * 2 1 3 14 14 N 1.46902 * 109.46799 * 64.99951 * 13 2 1 15 15 C 1.46907 * 110.99728 * 174.34273 * 14 13 2 16 16 H 1.08996 * 109.05635 * 175.24042 * 15 14 13 17 17 C 1.52776 * 109.06922 * 56.28689 * 15 14 13 18 18 C 1.52974 * 108.36863 * 147.90862 * 17 15 14 19 19 C 1.53002 * 109.43041 * 300.80437 * 18 17 15 20 20 C 1.53002 * 109.39088 * 180.92372 * 18 17 15 21 21 C 1.52556 * 109.70686 * 60.87453 * 18 17 15 22 22 C 1.53147 * 107.69381 * 33.04774 * 21 18 17 23 23 C 1.50573 * 111.00799 * 266.71555 * 22 21 18 24 24 C 1.38983 * 117.55372 * 229.97986 * 23 22 21 25 25 C 1.37914 * 120.54793 * 182.12562 * 24 23 22 26 26 C 1.38266 * 119.69643 * 359.90395 * 25 24 23 27 27 C 1.37880 * 119.78412 * 359.33521 * 26 25 24 28 28 C 1.37413 * 122.64383 * 50.80269 * 23 22 21 29 29 H 1.08998 * 109.47329 * 300.00820 * 1 2 3 30 30 H 1.09003 * 109.46556 * 60.00128 * 1 2 3 31 31 H 1.08993 * 109.47217 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46849 * 175.00304 * 4 2 1 33 33 H 1.08994 * 109.47543 * 54.99713 * 4 2 1 34 34 H 0.97006 * 119.99642 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47620 * 185.00122 * 13 2 1 36 36 H 1.09002 * 109.46863 * 305.00823 * 13 2 1 37 37 H 1.00892 * 111.00347 * 298.29765 * 14 13 2 38 38 H 1.09008 * 109.68341 * 267.62815 * 17 15 14 39 39 H 1.08998 * 109.68511 * 28.18816 * 17 15 14 40 40 H 1.08996 * 109.46610 * 187.51152 * 19 18 17 41 41 H 1.08994 * 109.46873 * 307.50560 * 19 18 17 42 42 H 1.08996 * 109.47292 * 67.51204 * 19 18 17 43 43 H 1.09002 * 109.46834 * 299.77981 * 20 18 17 44 44 H 1.08994 * 109.47046 * 59.78258 * 20 18 17 45 45 H 1.09008 * 109.46465 * 179.78443 * 20 18 17 46 46 H 1.08998 * 109.81932 * 273.49593 * 21 18 17 47 47 H 1.09004 * 109.86655 * 152.62105 * 21 18 17 48 48 H 1.09006 * 109.17296 * 146.31753 * 22 21 18 49 49 H 1.08996 * 109.13247 * 27.08299 * 22 21 18 50 50 H 1.08007 * 119.72487 * 2.10858 * 24 23 22 51 51 H 1.08003 * 120.15175 * 179.97438 * 25 24 23 52 52 H 1.08009 * 120.10839 * 179.36542 * 26 25 24 53 53 H 1.08001 * 119.69426 * 180.18286 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6412 0.0572 2.4766 6 1 1.0806 0.9748 2.3757 7 6 1.9931 -0.4015 3.7284 8 7 1.6456 0.2781 4.7993 9 14 2.9646 -1.9874 3.9030 10 1 2.0263 -3.1324 4.0197 11 1 3.8268 -2.1738 2.7083 12 1 3.8132 -1.9168 5.1196 13 6 2.0401 -0.7213 -1.2491 14 7 1.6514 0.0373 -2.4456 15 6 2.2379 -0.5526 -3.6564 16 1 1.8629 -0.0191 -4.5298 17 6 1.8188 -2.0187 -3.7508 18 6 1.6975 -2.3912 -5.2295 19 6 0.6596 -1.4878 -5.8985 20 6 1.2557 -3.8510 -5.3510 21 6 3.0468 -2.2103 -5.9179 22 6 4.1387 -2.5397 -4.8958 23 6 4.6064 -1.2967 -4.1861 24 6 5.9761 -1.0696 -4.1225 25 6 6.4743 0.0264 -3.4498 26 6 5.6034 0.9073 -2.8356 27 6 4.2438 0.6911 -2.9117 28 6 3.7388 -0.4083 -3.5977 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.1263 -0.7994 1.2057 33 1 1.6053 -1.7197 1.2954 34 1 1.8935 -0.0445 5.6800 35 1 3.1263 -0.7996 -1.2054 36 1 1.6053 -1.7198 -1.2950 37 1 0.6475 0.1000 -2.5237 38 1 2.5714 -2.6472 -3.2743 39 1 0.8572 -2.1582 -3.2569 40 1 0.4748 -1.8371 -6.9143 41 1 -0.2694 -1.5183 -5.3292 42 1 1.0339 -0.4646 -5.9285 43 1 1.9956 -4.4953 -4.8761 44 1 0.2916 -3.9809 -4.8593 45 1 1.1651 -4.1166 -6.4044 46 1 3.1546 -1.1792 -6.2545 47 1 3.1218 -2.8866 -6.7695 48 1 4.9838 -2.9978 -5.4098 49 1 3.7420 -3.2423 -4.1632 50 1 6.6559 -1.7573 -4.6035 51 1 7.5399 0.1965 -3.4040 52 1 5.9868 1.7622 -2.2983 53 1 3.5647 1.3817 -2.4339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664465906.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:56 Heat of formation + Delta-G solvation = -11.813450 kcal Electronic energy + Delta-G solvation = -27831.130686 eV Core-core repulsion = 24472.676364 eV Total energy + Delta-G solvation = -3358.454322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72575 -38.78584 -38.23174 -35.83206 -34.16377 -33.68616 -31.55611 -30.18865 -29.26778 -28.60529 -28.19871 -26.91899 -25.33339 -24.28869 -23.48620 -22.43105 -20.97543 -20.62737 -19.28561 -18.97408 -17.37696 -17.13839 -16.66027 -16.44750 -15.99746 -15.80625 -15.39618 -15.24734 -15.14090 -14.79358 -14.40754 -14.32732 -14.00945 -13.80713 -13.60572 -13.54422 -13.47321 -13.34000 -12.95792 -12.91951 -12.83153 -12.67541 -12.57717 -12.40056 -12.25631 -12.09957 -11.77133 -11.73065 -11.55868 -11.51614 -11.31381 -11.26320 -11.20568 -11.04085 -10.96044 -10.74715 -9.53772 -9.40093 -9.22455 -8.27202 -6.28866 0.53285 0.58924 1.32438 1.34899 1.46558 2.35842 2.92853 3.07992 3.29304 3.67721 3.74407 3.87025 3.99191 4.10148 4.14594 4.19522 4.24313 4.29176 4.38479 4.41963 4.45979 4.53108 4.68133 4.70883 4.73892 4.78248 4.78574 4.82355 4.86506 4.89119 4.97061 5.01841 5.02722 5.05620 5.12902 5.18927 5.20903 5.26225 5.28900 5.30739 5.35436 5.38354 5.46043 5.47272 5.56323 5.62083 5.69021 5.70520 5.73609 5.75394 5.81950 6.18253 6.24537 6.34988 6.59560 6.78422 7.34600 8.89617 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.013150 B = 0.003913 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.716434 B = 7153.581992 C = 8012.821829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.068 4.068 3 H 0.050 0.950 4 C -0.004 4.004 5 C -0.516 4.516 6 H 0.036 0.964 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.944 3.056 10 H -0.266 1.266 11 H -0.253 1.253 12 H -0.284 1.284 13 C 0.081 3.919 14 N -0.683 5.683 15 C 0.129 3.871 16 H 0.103 0.897 17 C -0.138 4.138 18 C -0.060 4.060 19 C -0.144 4.144 20 C -0.140 4.140 21 C -0.100 4.100 22 C -0.084 4.084 23 C -0.082 4.082 24 C -0.135 4.135 25 C -0.128 4.128 26 C -0.148 4.148 27 C -0.111 4.111 28 C -0.080 4.080 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.008 0.992 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.349 0.651 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.138 0.862 51 H 0.136 0.864 52 H 0.122 0.878 53 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.078 -7.572 -27.608 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.042 4.042 5 C -0.554 4.554 6 H 0.054 0.946 7 C -0.192 4.192 8 N -0.594 5.594 9 Si 0.768 3.232 10 H -0.191 1.191 11 H -0.177 1.177 12 H -0.210 1.210 13 C -0.048 4.048 14 N -0.314 5.314 15 C 0.020 3.980 16 H 0.121 0.879 17 C -0.177 4.177 18 C -0.060 4.060 19 C -0.201 4.201 20 C -0.197 4.197 21 C -0.138 4.138 22 C -0.120 4.120 23 C -0.083 4.083 24 C -0.153 4.153 25 C -0.146 4.146 26 C -0.166 4.166 27 C -0.129 4.129 28 C -0.080 4.080 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.169 0.831 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.156 0.844 51 H 0.154 0.846 52 H 0.140 0.860 53 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.565 -7.088 -27.352 28.622 hybrid contribution -0.118 -0.852 1.150 1.436 sum 4.447 -7.940 -26.202 27.738 Atomic orbital electron populations 1.21636 0.95134 1.00868 1.00737 1.20861 0.96052 0.98779 0.92996 0.93176 1.19530 0.95470 0.95581 0.93611 1.21439 1.34231 1.08630 0.91134 0.94571 1.25942 0.96930 1.00751 0.95575 1.70067 1.49094 1.41531 0.98675 0.85752 0.79460 0.79929 0.78084 1.19099 1.17693 1.21004 1.21778 0.99390 0.94415 0.89202 1.60520 1.15923 1.53536 1.01399 1.20589 0.90383 0.93866 0.93158 0.87920 1.22497 1.01128 0.96901 0.97138 1.20519 0.95651 0.96166 0.93701 1.21989 0.98208 0.99085 1.00800 1.21897 1.00907 0.94678 1.02201 1.21651 0.92639 1.02057 0.97415 1.20777 0.99445 0.93977 0.97842 1.19804 0.93155 0.96631 0.98684 1.21459 0.94872 0.98395 1.00542 1.21321 1.00323 0.95021 0.97926 1.21330 0.93882 1.00553 1.00788 1.21456 0.95451 0.98020 0.97990 1.19710 0.95077 0.94957 0.98276 0.94864 0.91342 0.93360 0.97386 0.96813 0.92672 0.92806 0.95112 0.83058 0.91797 0.91901 0.91596 0.92727 0.92486 0.92857 0.93045 0.91489 0.92017 0.89907 0.90182 0.90546 0.84426 0.84619 0.85953 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.77 71.98 0.63 -3.94 16 2 C -0.07 -2.68 2.55 -10.79 -0.03 -2.71 16 3 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.00 -0.19 3.52 29.85 0.10 -0.09 16 5 C -0.52 -30.30 8.96 25.60 0.23 -30.07 16 6 H 0.04 2.33 7.30 -2.91 -0.02 2.31 16 7 C 0.00 0.25 5.47 84.66 0.46 0.72 16 8 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 9 Si 0.94 45.74 27.47 68.60 1.88 47.63 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.25 -11.64 6.54 99.48 0.65 -10.99 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 13 C 0.08 2.59 4.25 86.30 0.37 2.96 16 14 N -0.68 -17.60 5.01 -495.51 -2.48 -20.08 16 15 C 0.13 2.83 2.44 44.15 0.11 2.94 16 16 H 0.10 2.07 5.42 -2.39 -0.01 2.06 16 17 C -0.14 -2.66 2.71 30.51 0.08 -2.58 16 18 C -0.06 -0.87 0.52 -52.34 -0.03 -0.90 16 19 C -0.14 -1.91 7.93 71.98 0.57 -1.34 16 20 C -0.14 -1.84 8.26 71.98 0.59 -1.24 16 21 C -0.10 -1.41 4.68 30.50 0.14 -1.27 16 22 C -0.08 -1.38 5.15 29.86 0.15 -1.23 16 23 C -0.08 -1.80 5.14 -19.92 -0.10 -1.90 16 24 C -0.13 -2.84 9.56 22.37 0.21 -2.63 16 25 C -0.13 -2.88 10.05 22.20 0.22 -2.66 16 26 C -0.15 -3.85 10.05 22.19 0.22 -3.62 16 27 C -0.11 -3.12 8.09 22.39 0.18 -2.94 16 28 C -0.08 -1.98 4.50 -19.80 -0.09 -2.07 16 29 H 0.03 1.40 6.95 -2.39 -0.02 1.39 16 30 H 0.07 1.99 6.81 -2.39 -0.02 1.98 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16 33 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 34 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 35 H 0.05 1.89 6.40 -2.39 -0.02 1.88 16 36 H 0.03 0.95 6.91 -2.39 -0.02 0.93 16 37 H 0.35 8.09 7.28 -89.70 -0.65 7.44 16 38 H 0.06 1.41 5.38 -2.38 -0.01 1.40 16 39 H 0.06 1.27 7.54 -2.39 -0.02 1.26 16 40 H 0.07 0.74 8.13 -2.39 -0.02 0.72 16 41 H 0.05 0.75 8.13 -2.39 -0.02 0.73 16 42 H 0.06 0.79 6.01 -2.39 -0.01 0.78 16 43 H 0.05 0.72 7.68 -2.39 -0.02 0.70 16 44 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 0.72 8.12 -2.38 -0.02 0.70 16 46 H 0.06 0.97 7.42 -2.39 -0.02 0.95 16 47 H 0.08 0.91 7.87 -2.39 -0.02 0.90 16 48 H 0.08 1.08 7.71 -2.38 -0.02 1.06 16 49 H 0.08 1.37 5.27 -2.39 -0.01 1.35 16 50 H 0.14 2.19 7.82 -2.91 -0.02 2.17 16 51 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 52 H 0.12 2.94 8.06 -2.91 -0.02 2.91 16 53 H 0.12 3.74 7.11 -2.91 -0.02 3.72 16 Total: -1.00 -66.77 384.65 3.91 -62.86 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.17 Total: 24.82 kcal Atomic # 6 Polarization: -58.62 SS G_CDS: 4.04 Total: -54.58 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -2.18 Total: -80.73 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.63 kcal Total: -66.77 3.91 -62.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664465906.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.045 kcal (2) G-P(sol) polarization free energy of solvation -66.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds