Wall clock time and date at job start Tue Mar 31 2020 11:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86804 * 119.99657 * 2 1 4 4 H 1.48502 * 109.46930 * 240.00120 * 3 2 1 5 5 H 1.48498 * 109.47371 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46976 * 120.00008 * 3 2 1 7 7 C 1.38804 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00243 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.76196 * 99.99824 * 185.65026 * 9 7 2 11 11 C 1.39106 * 120.19320 * 6.84442 * 10 9 7 12 12 C 1.37909 * 120.05421 * 180.02562 * 11 10 9 13 13 C 1.38658 * 120.43561 * 359.97438 * 12 11 10 14 14 C 1.37812 * 120.38153 * 359.97438 * 13 12 11 15 15 C 1.39669 * 119.94005 * 0.02562 * 14 13 12 16 16 C 1.47425 * 120.21855 * 180.02562 * 15 14 13 17 17 O 1.21614 * 120.00621 * 179.97438 * 16 15 14 18 18 N 1.34783 * 120.00100 * 359.97438 * 16 15 14 19 19 N 1.40095 * 120.00159 * 179.97438 * 18 16 15 20 20 C 1.38405 * 119.99636 * 180.02562 * 19 18 16 21 21 N 1.32491 * 119.22013 * 359.73098 * 20 19 18 22 22 C 1.32274 * 120.74388 * 179.71891 * 21 20 19 23 23 C 1.38613 * 119.19232 * 0.54377 * 22 21 20 24 24 C 1.38599 * 118.56084 * 359.73557 * 23 22 21 25 25 N 1.32281 * 119.19640 * 359.97438 * 24 23 22 26 26 H 0.96995 * 120.00232 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.97224 * 0.02562 * 11 10 9 28 28 H 1.07992 * 119.78562 * 179.97438 * 12 11 10 29 29 H 1.07999 * 119.81154 * 179.72181 * 13 12 11 30 30 H 1.08005 * 120.02764 * 179.97438 * 14 13 12 31 31 H 0.97007 * 119.99390 * 0.02562 * 18 16 15 32 32 H 0.96998 * 120.00171 * 0.02562 * 19 18 16 33 33 H 1.07995 * 120.41003 * 180.25352 * 22 21 20 34 34 H 1.07999 * 120.71791 * 179.75034 * 23 22 21 35 35 H 1.07999 * 120.40390 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0097 -1.2020 0.0005 8 1 3.0896 -1.2020 0.0001 9 16 1.1287 -2.7281 0.0019 10 6 2.4713 -3.8562 0.1730 11 6 3.7586 -3.3819 0.4030 12 6 4.8074 -4.2674 0.5359 13 6 4.5894 -5.6336 0.4424 14 6 3.3212 -6.1231 0.2160 15 6 2.2475 -5.2405 0.0789 16 6 0.8882 -5.7575 -0.1630 17 8 -0.0440 -4.9855 -0.2813 18 7 0.6786 -7.0859 -0.2529 19 7 -0.6132 -7.5772 -0.4822 20 6 -0.8285 -8.9413 -0.5741 21 7 0.1991 -9.7682 -0.4482 22 6 0.0269 -11.0774 -0.5253 23 6 -1.2450 -11.5799 -0.7518 24 6 -2.2964 -10.6866 -0.8844 25 7 -2.0565 -9.3891 -0.7909 26 1 -0.4850 0.8400 0.0004 27 1 3.9368 -2.3193 0.4775 28 1 5.8051 -3.8945 0.7140 29 1 5.4189 -6.3178 0.5436 30 1 3.1580 -7.1883 0.1438 31 1 1.4221 -7.7017 -0.1582 32 1 -1.3567 -6.9614 -0.5766 33 1 0.8676 -11.7466 -0.4178 34 1 -1.4130 -12.6443 -0.8232 35 1 -3.2996 -11.0456 -1.0611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044716650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:20 Heat of formation + Delta-G solvation = 95.262518 kcal Electronic energy + Delta-G solvation = -22210.654004 eV Core-core repulsion = 18723.130177 eV Total energy + Delta-G solvation = -3487.523827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08790 -39.63546 -37.69166 -35.96544 -33.84217 -32.80801 -32.61280 -30.87780 -30.35528 -28.94966 -25.88044 -24.83758 -23.89022 -22.95892 -21.98701 -20.69419 -19.17364 -18.05034 -17.77303 -16.97066 -16.37849 -15.98407 -15.57901 -15.48868 -15.17849 -14.66133 -14.47739 -14.44901 -13.99991 -13.83505 -13.61590 -13.09697 -12.95501 -12.34082 -11.72681 -11.65243 -11.29567 -11.21483 -11.21027 -11.03438 -11.00535 -10.38289 -10.01474 -9.80077 -9.75133 -9.54317 -9.32751 -8.79495 -8.46492 -8.19549 -7.71125 -6.60413 -6.51107 -4.22483 0.97943 0.98999 1.42973 1.78428 1.95811 3.06670 3.11575 3.15973 3.32638 3.35629 3.62052 3.74290 4.01520 4.16990 4.39218 4.49516 4.79886 4.90323 5.01022 5.04927 5.07363 5.24323 5.36564 5.55019 5.60919 5.83137 6.03857 6.13036 6.29734 6.49249 6.61616 6.75166 6.90150 7.03339 7.07976 7.18769 7.39318 7.52464 7.73250 8.09108 8.10906 8.66042 8.94971 10.52177 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.021171 B = 0.003159 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.263096 B = 8861.458241 C =10164.822468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.084 3.916 3 Si 0.920 3.080 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.597 4.597 8 H 0.092 0.908 9 S 0.191 5.809 10 C -0.054 4.054 11 C -0.151 4.151 12 C -0.073 4.073 13 C -0.184 4.184 14 C -0.059 4.059 15 C -0.171 4.171 16 C 0.554 3.446 17 O -0.508 6.508 18 N -0.519 5.519 19 N -0.483 5.483 20 C 0.569 3.431 21 N -0.578 5.578 22 C 0.199 3.801 23 C -0.302 4.302 24 C 0.200 3.800 25 N -0.568 5.568 26 H 0.276 0.724 27 H 0.141 0.859 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.428 0.572 32 H 0.448 0.552 33 H 0.168 0.832 34 H 0.143 0.857 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -20.294 -0.407 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.127 4.127 3 Si 0.745 3.255 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.744 4.744 8 H 0.110 0.890 9 S 0.456 5.544 10 C -0.174 4.174 11 C -0.176 4.176 12 C -0.095 4.095 13 C -0.209 4.209 14 C -0.079 4.079 15 C -0.188 4.188 16 C 0.344 3.656 17 O -0.384 6.384 18 N -0.271 5.271 19 N -0.213 5.213 20 C 0.211 3.789 21 N -0.303 5.303 22 C 0.031 3.969 23 C -0.329 4.329 24 C 0.032 3.968 25 N -0.291 5.291 26 H 0.086 0.914 27 H 0.158 0.842 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.271 0.729 32 H 0.294 0.706 33 H 0.185 0.815 34 H 0.161 0.839 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.310 -18.289 -0.530 18.299 hybrid contribution 1.865 0.055 0.081 1.868 sum 2.175 -18.235 -0.449 18.369 Atomic orbital electron populations 1.69958 1.06268 1.28686 1.43985 1.25111 0.94985 0.99702 0.92930 0.86182 0.79479 0.80492 0.79329 1.19413 1.20518 1.19427 1.24018 0.97020 0.93945 1.59376 0.89039 1.84739 1.02198 0.93031 1.74432 1.23039 1.00955 0.96624 0.96824 1.21432 0.91547 1.00963 1.03708 1.21120 0.98215 0.93348 0.96823 1.20643 0.96277 0.95314 1.08643 1.20930 0.92648 0.97477 0.96828 1.18666 0.90873 0.92698 1.16574 1.18526 0.89944 0.79438 0.77674 1.90819 1.43241 1.54705 1.49604 1.44858 0.98605 1.07084 1.76579 1.42533 1.01673 1.01260 1.75824 1.18931 0.85582 0.85306 0.89032 1.67774 1.33695 1.05121 1.23661 1.22895 0.96808 0.89976 0.87239 1.22483 0.95351 1.02430 1.12640 1.22911 0.99735 0.86632 0.87502 1.67748 1.21124 1.17867 1.22407 0.91360 0.84177 0.86805 0.86795 0.86953 0.72872 0.70597 0.81522 0.83869 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.42 13.22 55.49 0.73 -23.69 16 2 C 0.08 2.27 5.49 -17.46 -0.10 2.18 16 3 Si 0.92 20.39 29.55 -169.99 -5.02 15.37 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.60 -16.17 9.00 30.94 0.28 -15.89 16 8 H 0.09 2.33 4.98 -52.49 -0.26 2.07 16 9 S 0.19 5.02 18.56 -107.50 -2.00 3.02 16 10 C -0.05 -1.20 6.14 -38.39 -0.24 -1.44 16 11 C -0.15 -3.06 9.22 -39.38 -0.36 -3.43 16 12 C -0.07 -1.19 10.03 -39.55 -0.40 -1.59 16 13 C -0.18 -2.73 10.02 -39.58 -0.40 -3.13 16 14 C -0.06 -0.91 9.53 -39.20 -0.37 -1.29 16 15 C -0.17 -3.32 5.89 -104.75 -0.62 -3.93 16 16 C 0.55 10.77 7.87 -12.52 -0.10 10.67 16 17 O -0.51 -11.64 13.61 5.27 0.07 -11.57 16 18 N -0.52 -8.21 6.23 30.43 0.19 -8.02 16 19 N -0.48 -7.41 6.42 29.76 0.19 -7.22 16 20 C 0.57 7.88 8.54 -322.81 -2.76 5.13 16 21 N -0.58 -7.05 9.38 -13.93 -0.13 -7.18 16 22 C 0.20 1.71 11.30 -17.22 -0.19 1.51 16 23 C -0.30 -2.19 10.16 -39.31 -0.40 -2.59 16 24 C 0.20 1.77 11.30 -17.22 -0.19 1.58 16 25 N -0.57 -7.19 10.46 -13.93 -0.15 -7.34 16 26 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.14 2.94 5.04 -52.48 -0.26 2.68 16 28 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.36 6.40 -52.48 -0.34 1.03 16 31 H 0.43 5.87 5.94 -182.59 -1.08 4.78 16 32 H 0.45 7.11 8.11 -182.60 -1.48 5.62 16 33 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 35 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -32.60 322.31 -11.77 -44.37 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.68 Total: 9.62 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -5.84 Total: -12.23 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.84 Total: -53.45 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.07 Total: -11.57 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -2.00 Total: 3.02 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.60 -11.77 -44.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044716650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.634 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds