Wall clock time and date at job start Tue Mar 31 2020 11:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86804 * 119.99657 * 2 1 4 4 H 1.48502 * 109.46930 * 240.00120 * 3 2 1 5 5 H 1.48498 * 109.47371 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46976 * 120.00008 * 3 2 1 7 7 C 1.38804 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00243 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.76196 * 99.99824 * 185.65026 * 9 7 2 11 11 C 1.39106 * 120.19320 * 6.84442 * 10 9 7 12 12 C 1.37909 * 120.05421 * 180.02562 * 11 10 9 13 13 C 1.38658 * 120.43561 * 359.97438 * 12 11 10 14 14 C 1.37812 * 120.38153 * 359.97438 * 13 12 11 15 15 C 1.39669 * 119.94005 * 0.02562 * 14 13 12 16 16 C 1.47425 * 120.21855 * 180.02562 * 15 14 13 17 17 O 1.21614 * 120.00621 * 179.97438 * 16 15 14 18 18 N 1.34783 * 120.00100 * 359.97438 * 16 15 14 19 19 N 1.40095 * 120.00159 * 179.97438 * 18 16 15 20 20 C 1.38405 * 119.99636 * 180.02562 * 19 18 16 21 21 N 1.32491 * 119.22013 * 359.73098 * 20 19 18 22 22 C 1.32274 * 120.74388 * 179.71891 * 21 20 19 23 23 C 1.38613 * 119.19232 * 0.54377 * 22 21 20 24 24 C 1.38599 * 118.56084 * 359.73557 * 23 22 21 25 25 N 1.32281 * 119.19640 * 359.97438 * 24 23 22 26 26 H 0.96995 * 120.00232 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.97224 * 0.02562 * 11 10 9 28 28 H 1.07992 * 119.78562 * 179.97438 * 12 11 10 29 29 H 1.07999 * 119.81154 * 179.72181 * 13 12 11 30 30 H 1.08005 * 120.02764 * 179.97438 * 14 13 12 31 31 H 0.97007 * 119.99390 * 0.02562 * 18 16 15 32 32 H 0.96998 * 120.00171 * 0.02562 * 19 18 16 33 33 H 1.07995 * 120.41003 * 180.25352 * 22 21 20 34 34 H 1.07999 * 120.71791 * 179.75034 * 23 22 21 35 35 H 1.07999 * 120.40390 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0097 -1.2020 0.0005 8 1 3.0896 -1.2020 0.0001 9 16 1.1287 -2.7281 0.0019 10 6 2.4713 -3.8562 0.1730 11 6 3.7586 -3.3819 0.4030 12 6 4.8074 -4.2674 0.5359 13 6 4.5894 -5.6336 0.4424 14 6 3.3212 -6.1231 0.2160 15 6 2.2475 -5.2405 0.0789 16 6 0.8882 -5.7575 -0.1630 17 8 -0.0440 -4.9855 -0.2813 18 7 0.6786 -7.0859 -0.2529 19 7 -0.6132 -7.5772 -0.4822 20 6 -0.8285 -8.9413 -0.5741 21 7 0.1991 -9.7682 -0.4482 22 6 0.0269 -11.0774 -0.5253 23 6 -1.2450 -11.5799 -0.7518 24 6 -2.2964 -10.6866 -0.8844 25 7 -2.0565 -9.3891 -0.7909 26 1 -0.4850 0.8400 0.0004 27 1 3.9368 -2.3193 0.4775 28 1 5.8051 -3.8945 0.7140 29 1 5.4189 -6.3178 0.5436 30 1 3.1580 -7.1883 0.1438 31 1 1.4221 -7.7017 -0.1582 32 1 -1.3567 -6.9614 -0.5766 33 1 0.8676 -11.7466 -0.4178 34 1 -1.4130 -12.6443 -0.8232 35 1 -3.2996 -11.0456 -1.0611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044716650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:20 Heat of formation + Delta-G solvation = 74.177224 kcal Electronic energy + Delta-G solvation = -22211.568331 eV Core-core repulsion = 18723.130177 eV Total energy + Delta-G solvation = -3488.438154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.95957 -41.05556 -39.12183 -37.22748 -34.77529 -34.65865 -33.79207 -32.10355 -31.82664 -30.06793 -27.85101 -25.67046 -25.02560 -24.09929 -23.39937 -22.10095 -20.47646 -19.52478 -19.02266 -18.27639 -17.52694 -17.20609 -16.98944 -16.57740 -16.45461 -16.07457 -15.78478 -15.64988 -15.38343 -15.16082 -14.75564 -14.52764 -14.24604 -13.73368 -13.33050 -12.99818 -12.94594 -12.92321 -12.58521 -12.07715 -11.95297 -11.87270 -11.64567 -11.45273 -11.35559 -10.73952 -10.43151 -10.14404 -10.01988 -9.89188 -8.84055 -8.46963 -8.45742 -6.25713 -0.08213 0.24412 0.27896 0.51924 0.61968 1.26416 1.38552 1.44273 1.61919 1.86552 2.20172 2.61047 2.85667 2.93530 3.00516 3.22456 3.39075 3.59730 3.93604 3.96819 4.05618 4.26393 4.42021 4.54577 4.60111 4.62690 4.80099 4.94909 5.05664 5.28487 5.35158 5.43895 5.52898 5.65559 5.66294 5.97587 6.08466 6.14946 6.20309 6.52220 6.95171 7.04425 7.40287 8.59396 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.021171 B = 0.003159 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.263096 B = 8861.458241 C =10164.822468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 0.994 3.006 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.602 4.602 8 H 0.098 0.902 9 S 0.067 5.933 10 C -0.067 4.067 11 C -0.172 4.172 12 C -0.063 4.063 13 C -0.153 4.153 14 C -0.053 4.053 15 C -0.173 4.173 16 C 0.549 3.451 17 O -0.551 6.551 18 N -0.497 5.497 19 N -0.502 5.502 20 C 0.547 3.453 21 N -0.593 5.593 22 C 0.185 3.815 23 C -0.276 4.276 24 C 0.183 3.817 25 N -0.595 5.595 26 H 0.276 0.724 27 H 0.123 0.877 28 H 0.154 0.846 29 H 0.169 0.831 30 H 0.156 0.844 31 H 0.439 0.561 32 H 0.439 0.561 33 H 0.207 0.793 34 H 0.186 0.814 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.724 -24.742 -0.188 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.814 3.186 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.749 4.749 8 H 0.115 0.885 9 S 0.326 5.674 10 C -0.185 4.185 11 C -0.197 4.197 12 C -0.084 4.084 13 C -0.176 4.176 14 C -0.073 4.073 15 C -0.188 4.188 16 C 0.338 3.662 17 O -0.429 6.429 18 N -0.248 5.248 19 N -0.234 5.234 20 C 0.190 3.810 21 N -0.318 5.318 22 C 0.020 3.980 23 C -0.301 4.301 24 C 0.018 3.982 25 N -0.319 5.319 26 H 0.085 0.915 27 H 0.141 0.859 28 H 0.172 0.828 29 H 0.187 0.813 30 H 0.174 0.826 31 H 0.284 0.716 32 H 0.284 0.716 33 H 0.224 0.776 34 H 0.203 0.797 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.782 -22.943 -0.307 23.255 hybrid contribution 0.966 0.782 0.017 1.243 sum 4.748 -22.161 -0.290 22.665 Atomic orbital electron populations 1.70122 1.08088 1.29307 1.46502 1.26163 0.95840 1.03501 0.92631 0.85077 0.78092 0.75628 0.79758 1.18554 1.20026 1.18309 1.24221 0.97166 0.94191 1.59300 0.88476 1.84942 1.06408 0.95591 1.80426 1.22926 1.00008 0.96793 0.98820 1.21468 0.91956 1.01154 1.05161 1.21593 0.98676 0.93676 0.94425 1.21334 0.97239 0.95310 1.03731 1.21430 0.91739 0.99038 0.95109 1.18999 0.92202 0.92225 1.15373 1.18663 0.89756 0.80302 0.77456 1.90816 1.44510 1.56080 1.51528 1.44444 0.99613 1.06025 1.74674 1.42585 1.00736 1.02145 1.77973 1.19021 0.86632 0.84765 0.90562 1.67782 1.33309 1.06628 1.24041 1.23699 0.98882 0.89087 0.86366 1.22977 0.94114 1.04235 1.08783 1.23645 1.02000 0.85575 0.87023 1.67727 1.21007 1.20107 1.23086 0.91489 0.85928 0.82827 0.81336 0.82644 0.71560 0.71650 0.77638 0.79679 0.78187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.59 13.22 21.65 0.29 -55.30 16 2 C 0.02 1.40 5.49 84.87 0.47 1.86 16 3 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.60 -34.94 9.00 67.96 0.61 -34.32 16 8 H 0.10 5.25 4.98 -2.92 -0.01 5.24 16 9 S 0.07 3.85 18.56 -56.49 -1.05 2.80 16 10 C -0.07 -3.11 6.14 23.04 0.14 -2.96 16 11 C -0.17 -6.96 9.22 22.40 0.21 -6.75 16 12 C -0.06 -1.80 10.03 22.29 0.22 -1.58 16 13 C -0.15 -3.64 10.02 22.27 0.22 -3.41 16 14 C -0.05 -1.44 9.53 22.51 0.21 -1.23 16 15 C -0.17 -6.69 5.89 -19.95 -0.12 -6.81 16 16 C 0.55 22.18 7.87 86.66 0.68 22.86 16 17 O -0.55 -27.48 13.61 -4.08 -0.06 -27.53 16 18 N -0.50 -15.73 6.23 -175.87 -1.10 -16.82 16 19 N -0.50 -15.97 6.42 -59.75 -0.38 -16.35 16 20 C 0.55 14.93 8.54 261.49 2.23 17.16 16 21 N -0.59 -13.17 9.38 -197.99 -1.86 -15.02 16 22 C 0.19 2.47 11.30 84.72 0.96 3.43 16 23 C -0.28 -2.82 10.16 22.45 0.23 -2.59 16 24 C 0.18 2.77 11.30 84.71 0.96 3.72 16 25 N -0.59 -14.74 10.46 -197.99 -2.07 -16.81 16 26 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 27 H 0.12 5.34 5.04 -2.91 -0.01 5.32 16 28 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 29 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.16 2.90 6.40 -2.91 -0.02 2.88 16 31 H 0.44 11.23 5.94 -213.31 -1.27 9.96 16 32 H 0.44 15.18 8.11 -213.33 -1.73 13.44 16 33 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.19 0.35 8.06 -2.91 -0.02 0.32 16 35 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -82.19 322.31 1.02 -81.17 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -1.81 Total: 28.74 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 7.03 Total: -10.63 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -5.12 Total: -120.31 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.06 Total: -27.53 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.05 Total: 2.80 kcal Total: -82.19 1.02 -81.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044716650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.347 kcal (2) G-P(sol) polarization free energy of solvation -82.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds