Wall clock time and date at job start Tue Mar 31 2020 11:30:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.46499 * 119.99694 * 2 1
4 4 S 1.65597 * 120.00164 * 180.02562 * 2 1 3
5 5 O 1.42096 * 106.40113 * 336.46060 * 4 2 1
6 6 O 1.42098 * 106.39976 * 203.54372 * 4 2 1
7 7 N 1.65602 * 107.21892 * 90.00077 * 4 2 1
8 8 C 1.40011 * 119.99553 * 60.11268 * 7 4 2
9 9 C 1.38641 * 120.09705 * 35.55974 * 8 7 4
10 10 C 1.38284 * 119.99987 * 179.97438 * 9 8 7
11 11 C 1.38275 * 120.20648 * 359.97438 * 10 9 8
12 12 C 1.38242 * 120.19436 * 0.02562 * 11 10 9
13 13 C 1.38731 * 119.99789 * 0.02562 * 12 11 10
14 14 S 1.76193 * 120.10435 * 179.97438 * 13 12 11
15 15 C 1.81398 * 103.00058 * 0.02562 * 14 13 12
16 16 C 1.50707 * 109.47312 * 179.97438 * 15 14 13
17 17 H 1.07996 * 119.99640 * 359.97438 * 16 15 14
18 18 C 1.37869 * 120.00193 * 179.97438 * 16 15 14
19 19 N 1.31516 * 120.00017 * 359.97438 * 18 16 15
20 20 Si 1.86795 * 120.00185 * 179.97438 * 18 16 15
21 21 H 1.48496 * 109.47270 * 0.02562 * 20 18 16
22 22 H 1.48504 * 109.47082 * 120.00118 * 20 18 16
23 23 H 1.48500 * 109.47462 * 239.99819 * 20 18 16
24 24 H 1.08999 * 109.47543 * 269.99632 * 1 2 3
25 25 H 1.09003 * 109.47581 * 30.00211 * 1 2 3
26 26 H 1.09010 * 109.46939 * 149.99837 * 1 2 3
27 27 H 1.08998 * 109.47217 * 179.97438 * 3 2 1
28 28 H 1.09000 * 109.47255 * 299.99796 * 3 2 1
29 29 H 1.09002 * 109.47268 * 60.00001 * 3 2 1
30 30 H 0.96993 * 120.00096 * 240.11244 * 7 4 2
31 31 H 1.07996 * 120.00321 * 359.94984 * 9 8 7
32 32 H 1.08003 * 119.90027 * 179.97438 * 10 9 8
33 33 H 1.07994 * 119.90005 * 179.74823 * 11 10 9
34 34 H 1.08008 * 120.00310 * 180.02562 * 12 11 10
35 35 H 1.09005 * 109.47008 * 299.99510 * 15 14 13
36 36 H 1.08997 * 109.47537 * 59.99743 * 15 14 13
37 37 H 0.96998 * 120.00038 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 16 2.2930 -1.4341 -0.0006
5 8 1.4114 -2.4067 0.5433
6 8 3.5759 -1.1569 0.5440
7 7 2.5382 -1.8579 -1.5826
8 6 3.2636 -1.0115 -2.4297
9 6 4.3388 -0.2888 -1.9359
10 6 5.0543 0.5462 -2.7744
11 6 4.7014 0.6632 -4.1062
12 6 3.6308 -0.0535 -4.6074
13 6 2.9066 -0.8928 -3.7733
14 16 1.5411 -1.8070 -4.4089
15 6 1.4977 -1.3151 -6.1543
16 6 0.3638 -2.0249 -6.8483
17 1 -0.2673 -2.7044 -6.2947
18 6 0.1320 -1.8069 -8.1898
19 7 0.9002 -0.9791 -8.8638
20 14 -1.2729 -2.6873 -9.0501
21 1 -1.9820 -3.5568 -8.0773
22 1 -2.2211 -1.6860 -9.6011
23 1 -0.7331 -3.5186 -10.1559
24 1 -0.3634 -0.0001 1.0276
25 1 -0.3634 0.8900 -0.5139
26 1 -0.3633 -0.8901 -0.5139
27 1 3.2691 1.0697 0.0005
28 1 1.9341 1.8403 -0.8900
29 1 1.9341 1.8403 0.8900
30 1 2.1792 -2.6925 -1.9224
31 1 4.6174 -0.3777 -0.8962
32 1 5.8914 1.1087 -2.3879
33 1 5.2611 1.3199 -4.7557
34 1 3.3581 0.0400 -5.6483
35 1 1.3493 -0.2374 -6.2245
36 1 2.4402 -1.5839 -6.6312
37 1 0.7374 -0.8260 -9.8077
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000112689385.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:36
Heat of formation + Delta-G solvation = -70.038231 kcal
Electronic energy + Delta-G solvation = -22254.975433 eV
Core-core repulsion = 18863.434828 eV
Total energy + Delta-G solvation = -3391.540605 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 316.070 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.42480 -38.56140 -37.23830 -37.05927 -36.12331 -35.32315 -32.17718 -30.65033
-30.05779 -28.99629 -25.66594 -25.44851 -24.00216 -23.32946 -20.57653 -19.54941
-19.03291 -18.67469 -18.26317 -17.86812 -17.01832 -16.85098 -16.17089 -15.81265
-15.51259 -15.48402 -14.95444 -14.84108 -14.68657 -14.33072 -14.27357 -14.10296
-13.66861 -13.54663 -13.39436 -13.30934 -13.06423 -12.80154 -12.75333 -12.63811
-12.59857 -12.26790 -12.09535 -11.64068 -11.54567 -10.94304 -10.87548 -10.55386
-10.19348 -9.49574 -8.37173 -8.24028 -6.50933 -0.70522 0.26911 0.34543
0.80299 1.39055 1.40485 1.53891 1.62405 1.82702 2.27493 2.34435
2.68773 2.98532 3.14688 3.72027 3.88748 3.93348 4.17391 4.40041
4.44948 4.53661 4.57002 4.72313 4.77361 4.86231 4.87273 4.89341
4.92857 4.99289 5.03725 5.24634 5.39024 5.42815 5.52177 5.56922
5.74541 5.81719 6.02446 6.56246 7.18114 8.74987
Molecular weight = 316.07amu
Principal moments of inertia in cm(-1)
A = 0.017755 B = 0.004095 C = 0.003626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1576.667113 B = 6836.637719 C = 7719.815456
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -1.004 6.004
3 C 0.077 3.923
4 S 2.802 3.198
5 O -0.994 6.994
6 O -0.981 6.981
7 N -1.061 6.061
8 C 0.162 3.838
9 C -0.163 4.163
10 C -0.090 4.090
11 C -0.111 4.111
12 C -0.128 4.128
13 C -0.112 4.112
14 S -0.159 6.159
15 C 0.081 3.919
16 C -0.541 4.541
17 H 0.065 0.935
18 C 0.020 3.980
19 N -0.921 5.921
20 Si 0.975 3.025
21 H -0.265 1.265
22 H -0.272 1.272
23 H -0.274 1.274
24 H 0.074 0.926
25 H 0.091 0.909
26 H 0.063 0.937
27 H 0.085 0.915
28 H 0.068 0.932
29 H 0.087 0.913
30 H 0.425 0.575
31 H 0.167 0.833
32 H 0.168 0.832
33 H 0.151 0.849
34 H 0.111 0.889
35 H 0.024 0.976
36 H 0.021 0.979
37 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.974 6.662 16.149 18.163
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 N -0.848 5.848
3 C -0.067 4.067
4 S 2.810 3.190
5 O -0.979 6.979
6 O -0.965 6.965
7 N -0.811 5.811
8 C 0.060 3.940
9 C -0.185 4.185
10 C -0.111 4.111
11 C -0.131 4.131
12 C -0.153 4.153
13 C -0.229 4.229
14 S 0.086 5.914
15 C -0.067 4.067
16 C -0.580 4.580
17 H 0.083 0.917
18 C -0.181 4.181
19 N -0.559 5.559
20 Si 0.798 3.202
21 H -0.189 1.189
22 H -0.198 1.198
23 H -0.199 1.199
24 H 0.092 0.908
25 H 0.110 0.890
26 H 0.082 0.918
27 H 0.103 0.897
28 H 0.087 0.913
29 H 0.105 0.895
30 H 0.262 0.738
31 H 0.184 0.816
32 H 0.186 0.814
33 H 0.169 0.831
34 H 0.129 0.871
35 H 0.042 0.958
36 H 0.039 0.961
37 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 4.461 5.552 17.366 18.770
hybrid contribution -0.225 0.149 -2.185 2.202
sum 4.236 5.701 15.181 16.761
Atomic orbital electron populations
1.21676 0.76865 1.04104 1.03255 1.57388 1.16344 1.21929 1.89124
1.21877 0.96730 0.84293 1.03810 1.01495 0.72977 0.72525 0.71970
1.93595 1.66899 1.60700 1.76667 1.93511 1.40910 1.85000 1.77035
1.53814 1.66113 1.30434 1.30712 1.16951 0.93622 0.94996 0.88449
1.21944 0.93706 0.99498 1.03348 1.21367 0.99723 0.97607 0.92378
1.21379 0.96004 0.99090 0.96648 1.21299 0.97324 0.97537 0.99162
1.21934 1.01178 1.03174 0.96582 1.84920 1.35466 1.57791 1.13180
1.21000 0.99810 0.98526 0.87353 1.20970 1.14452 1.27449 0.95084
0.91714 1.25842 0.99236 0.95612 0.97459 1.70046 1.39879 1.36144
1.09821 0.85245 0.78256 0.78409 0.78246 1.18905 1.19774 1.19916
0.90754 0.88995 0.91817 0.89663 0.91303 0.89456 0.73762 0.81610
0.81439 0.83106 0.87125 0.95786 0.96066 0.91964
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.59 10.33 127.77 1.32 2.91 16
2 N -1.00 -21.23 3.64 -562.68 -2.05 -23.28 16
3 C 0.08 1.27 10.37 127.77 1.32 2.60 16
4 S 2.80 73.62 5.82 -56.49 -0.33 73.29 16
5 O -0.99 -31.10 17.21 -128.00 -2.20 -33.31 16
6 O -0.98 -27.20 13.75 -128.00 -1.76 -28.96 16
7 N -1.06 -30.18 5.52 -50.94 -0.28 -30.46 16
8 C 0.16 4.90 6.40 38.24 0.24 5.14 16
9 C -0.16 -4.07 7.96 22.38 0.18 -3.90 16
10 C -0.09 -1.90 10.04 22.29 0.22 -1.68 16
11 C -0.11 -2.78 10.04 22.28 0.22 -2.55 16
12 C -0.13 -4.37 9.36 22.39 0.21 -4.16 16
13 C -0.11 -3.99 6.12 22.70 0.14 -3.85 16
14 S -0.16 -6.68 20.74 -56.49 -1.17 -7.85 16
15 C 0.08 4.11 4.09 71.24 0.29 4.40 16
16 C -0.54 -29.70 9.13 25.60 0.23 -29.47 16
17 H 0.06 3.53 7.71 -2.91 -0.02 3.50 16
18 C 0.02 1.09 5.46 84.65 0.46 1.56 16
19 N -0.92 -52.23 13.29 21.44 0.28 -51.94 16
20 Si 0.97 42.31 29.54 68.60 2.03 44.33 16
21 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16
22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16
23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16
24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
25 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16
26 H 0.06 1.32 7.79 -2.38 -0.02 1.30 16
27 H 0.08 1.41 5.41 -2.39 -0.01 1.40 16
28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16
30 H 0.43 12.23 8.13 -96.75 -0.79 11.44 16
31 H 0.17 3.92 4.76 -2.91 -0.01 3.90 16
32 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16
33 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16
34 H 0.11 4.28 5.88 -2.91 -0.02 4.27 16
35 H 0.02 1.29 7.75 -2.39 -0.02 1.27 16
36 H 0.02 1.14 7.75 -2.39 -0.02 1.13 16
37 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16
Total: -1.00 -67.46 332.22 -0.31 -67.78
By element:
Atomic # 1 Polarization: 19.08 SS G_CDS: 0.32 Total: 19.40 kcal
Atomic # 6 Polarization: -33.85 SS G_CDS: 4.85 Total: -29.00 kcal
Atomic # 7 Polarization: -103.64 SS G_CDS: -2.05 Total: -105.68 kcal
Atomic # 8 Polarization: -58.31 SS G_CDS: -3.96 Total: -62.27 kcal
Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal
Atomic # 16 Polarization: 66.94 SS G_CDS: -1.50 Total: 65.44 kcal
Total: -67.46 -0.31 -67.78 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000112689385.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.263 kcal
(2) G-P(sol) polarization free energy of solvation -67.461 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.724 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.314 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.038 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds