Wall clock time and date at job start Tue Mar 31 2020 12:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48497 * 109.46877 * 274.98195 * 3 2 1 5 5 H 1.48501 * 109.46934 * 34.98045 * 3 2 1 6 6 H 1.48501 * 109.47064 * 154.98245 * 3 2 1 7 7 C 1.40050 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99977 * 173.96614 * 7 2 1 9 9 C 1.46374 * 119.99962 * 353.97125 * 7 2 1 10 10 O 1.21685 * 119.99784 * 5.94239 * 9 7 2 11 11 N 1.34769 * 120.00016 * 185.94327 * 9 7 2 12 12 C 1.46506 * 120.00094 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.47030 * 326.13642 * 12 11 9 14 14 C 1.50698 * 109.46952 * 86.13714 * 12 11 9 15 15 C 1.38264 * 119.98799 * 219.99988 * 14 12 11 16 16 C 1.38223 * 120.02567 * 180.02562 * 15 14 12 17 17 C 1.38243 * 120.00855 * 359.97438 * 16 15 14 18 18 C 1.38326 * 119.98895 * 0.02562 * 17 16 15 19 19 Cl 1.73604 * 120.01167 * 179.97438 * 18 17 16 20 20 C 1.38183 * 119.99581 * 39.72943 * 14 12 11 21 21 C 1.50703 * 109.46943 * 206.13808 * 12 11 9 22 22 C 1.38221 * 119.61744 * 117.14110 * 21 12 11 23 23 C 1.38630 * 119.16387 * 180.27609 * 22 21 12 24 24 C 1.38677 * 118.41451 * 359.48000 * 23 22 21 25 25 C 1.38179 * 119.16464 * 0.47795 * 24 23 22 26 26 N 1.31851 * 119.62023 * 297.11641 * 21 12 11 27 27 H 0.97003 * 120.00054 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00157 * 0.02562 * 11 9 7 29 29 H 1.08003 * 119.98829 * 0.02562 * 15 14 12 30 30 H 1.07998 * 119.99723 * 180.02562 * 16 15 14 31 31 H 1.08004 * 119.99970 * 180.02562 * 17 16 15 32 32 H 1.08003 * 120.00488 * 0.02562 * 20 14 12 33 33 H 1.08003 * 120.42158 * 359.97438 * 22 21 12 34 34 H 1.07999 * 120.79624 * 179.71810 * 23 22 21 35 35 H 1.08000 * 120.41641 * 180.22136 * 24 23 22 36 36 H 1.07996 * 119.61987 * 179.77071 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0071 -1.2129 0.0005 8 1 3.0825 -1.2155 -0.0978 9 6 1.2813 -2.4769 0.1342 10 8 0.0644 -2.4826 0.1361 11 7 1.9607 -3.6345 0.2553 12 6 1.2343 -4.8998 0.3885 13 1 0.3135 -4.7330 0.9474 14 6 0.9012 -5.4343 -0.9805 15 6 -0.3293 -6.0206 -1.2129 16 6 -0.6354 -6.5116 -2.4682 17 6 0.2885 -6.4163 -3.4922 18 6 1.5196 -5.8299 -3.2602 19 17 2.6805 -5.7104 -4.5454 20 6 1.8233 -5.3335 -2.0047 21 6 2.0933 -5.8974 1.1220 22 6 1.6755 -6.3909 2.3437 23 6 2.4759 -7.3037 3.0130 24 6 3.6668 -7.6961 2.4206 25 6 4.0184 -7.1604 1.1963 26 7 3.2346 -6.2897 0.5908 27 1 -0.4850 0.8401 -0.0004 28 1 2.9307 -3.6300 0.2542 29 1 -1.0515 -6.0949 -0.4134 30 1 -1.5968 -6.9691 -2.6494 31 1 0.0490 -6.7996 -4.4730 32 1 2.7829 -4.8719 -1.8240 33 1 0.7397 -6.0657 2.7737 34 1 2.1772 -7.7028 3.9710 35 1 4.3133 -8.4082 2.9118 36 1 4.9460 -7.4579 0.7301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153992524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:37 Heat of formation + Delta-G solvation = 15.272091 kcal Electronic energy + Delta-G solvation = -23226.569865 eV Core-core repulsion = 19701.240936 eV Total energy + Delta-G solvation = -3525.328929 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.36620 -38.93489 -37.21890 -36.13016 -34.25710 -32.47093 -32.28010 -30.95778 -30.38173 -30.31347 -26.87537 -25.27191 -23.50933 -22.62333 -22.18842 -20.95959 -19.43501 -17.64021 -16.92750 -16.49771 -16.09779 -15.48699 -15.32542 -15.16645 -14.98089 -14.27658 -14.04413 -13.59263 -13.44212 -13.25342 -13.16921 -12.92316 -12.63953 -12.23863 -11.84739 -11.63160 -11.30299 -11.19780 -11.04797 -10.99362 -10.88120 -10.55638 -10.45719 -10.23448 -9.83516 -9.36342 -9.03331 -8.85555 -8.50189 -8.32658 -7.67017 -7.61302 -6.20774 -4.64444 1.11570 1.33375 1.53655 1.68330 2.44152 3.14273 3.21741 3.25480 3.81353 3.97443 4.11522 4.41551 4.52641 4.65456 4.85388 5.04151 5.08809 5.09766 5.19719 5.25916 5.40182 5.58898 5.63578 5.72713 5.79475 5.86393 5.91756 6.02732 6.18230 6.25879 6.30767 6.58840 6.64164 6.74244 6.93815 7.15649 7.43446 7.86764 7.99427 8.11133 8.31629 9.01967 9.47616 10.57008 10.74987 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.009088 B = 0.005398 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3080.107888 B = 5185.790399 C = 6819.316086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.557 3.443 10 O -0.575 6.575 11 N -0.750 5.750 12 C 0.243 3.757 13 H 0.102 0.898 14 C -0.061 4.061 15 C -0.103 4.103 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.040 4.040 19 Cl -0.084 7.084 20 C -0.063 4.063 21 C 0.137 3.863 22 C -0.158 4.158 23 C -0.076 4.076 24 C -0.181 4.181 25 C 0.100 3.900 26 N -0.468 5.468 27 H 0.268 0.732 28 H 0.386 0.614 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.442 -15.657 1.061 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.362 3.638 10 O -0.458 6.458 11 N -0.405 5.405 12 C 0.136 3.864 13 H 0.120 0.880 14 C -0.064 4.064 15 C -0.122 4.122 16 C -0.135 4.135 17 C -0.138 4.138 18 C -0.066 4.066 19 Cl -0.055 7.055 20 C -0.082 4.082 21 C -0.002 4.002 22 C -0.179 4.179 23 C -0.102 4.102 24 C -0.201 4.201 25 C -0.058 4.058 26 N -0.177 5.177 27 H 0.079 0.921 28 H 0.218 0.782 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.712 -15.158 0.150 15.607 hybrid contribution 0.796 0.443 0.694 1.146 sum 4.508 -14.715 0.844 15.413 Atomic orbital electron populations 1.70023 1.07029 1.27269 1.35131 1.25679 0.94588 1.00221 0.92582 0.86385 0.80317 0.81536 0.78727 1.19789 1.20405 1.18840 1.20836 0.94111 0.89345 1.53585 0.91387 1.18251 0.87191 0.82081 0.76291 1.90600 1.13923 1.86084 1.55170 1.46270 1.08852 1.04001 1.81388 1.18281 0.94516 0.83157 0.90482 0.88013 1.20224 0.93431 0.96551 0.96171 1.21096 0.96166 0.97613 0.97311 1.20941 0.98966 1.00834 0.92726 1.20910 0.92393 1.00784 0.99763 1.20864 0.91746 1.04197 0.89822 1.98334 1.59543 1.97134 1.50529 1.20824 1.00396 0.96940 0.90037 1.21395 0.91921 0.94910 0.91930 1.22008 1.01586 0.98371 0.95886 1.21539 0.93839 0.95461 0.99370 1.22101 0.98084 1.02252 0.97637 1.22747 0.98330 0.92521 0.92197 1.67468 1.04175 1.11407 1.34624 0.92120 0.78169 0.85762 0.85596 0.85685 0.84687 0.84586 0.84978 0.85134 0.82940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.73 11.85 55.55 0.66 -22.07 16 2 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 3 Si 0.91 20.19 29.56 -169.99 -5.03 15.17 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.54 -15.20 9.54 -35.63 -0.34 -15.54 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.56 15.46 7.71 -12.99 -0.10 15.36 16 10 O -0.58 -17.95 14.69 5.20 0.08 -17.87 16 11 N -0.75 -16.64 4.28 -57.48 -0.25 -16.89 16 12 C 0.24 4.63 2.51 -70.23 -0.18 4.45 16 13 H 0.10 2.06 7.12 -51.93 -0.37 1.69 16 14 C -0.06 -1.14 4.85 -104.63 -0.51 -1.65 16 15 C -0.10 -1.72 9.67 -39.58 -0.38 -2.10 16 16 C -0.12 -1.72 10.05 -39.59 -0.40 -2.11 16 17 C -0.12 -1.81 9.83 -39.55 -0.39 -2.20 16 18 C -0.04 -0.67 6.32 -39.50 -0.25 -0.92 16 19 Cl -0.08 -1.29 28.96 -51.86 -1.50 -2.79 16 20 C -0.06 -1.16 8.63 -39.55 -0.34 -1.51 16 21 C 0.14 2.18 5.61 -82.59 -0.46 1.71 16 22 C -0.16 -2.11 9.71 -39.44 -0.38 -2.49 16 23 C -0.08 -0.82 10.18 -39.27 -0.40 -1.22 16 24 C -0.18 -1.85 10.11 -39.44 -0.40 -2.25 16 25 C 0.10 1.20 11.18 -17.55 -0.20 1.01 16 26 N -0.47 -7.16 9.57 -9.48 -0.09 -7.25 16 27 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 28 H 0.39 8.03 8.51 -40.82 -0.35 7.69 16 29 H 0.12 1.84 8.04 -52.48 -0.42 1.42 16 30 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.14 2.58 7.71 -52.48 -0.40 2.17 16 33 H 0.14 1.64 7.95 -52.48 -0.42 1.22 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -34.01 337.38 -9.49 -43.50 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -3.62 Total: 10.20 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -4.82 Total: -7.08 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.32 Total: -46.21 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.08 Total: -17.87 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.17 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.50 Total: -2.79 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.01 -9.49 -43.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153992524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.767 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds