Wall clock time and date at job start Tue Mar 31 2020 12:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48497 * 109.46877 * 274.98195 * 3 2 1 5 5 H 1.48501 * 109.46934 * 34.98045 * 3 2 1 6 6 H 1.48501 * 109.47064 * 154.98245 * 3 2 1 7 7 C 1.40050 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99977 * 173.96614 * 7 2 1 9 9 C 1.46374 * 119.99962 * 353.97125 * 7 2 1 10 10 O 1.21685 * 119.99784 * 5.94239 * 9 7 2 11 11 N 1.34769 * 120.00016 * 185.94327 * 9 7 2 12 12 C 1.46506 * 120.00094 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.47030 * 326.13642 * 12 11 9 14 14 C 1.50698 * 109.46952 * 86.13714 * 12 11 9 15 15 C 1.38264 * 119.98799 * 219.99988 * 14 12 11 16 16 C 1.38223 * 120.02567 * 180.02562 * 15 14 12 17 17 C 1.38243 * 120.00855 * 359.97438 * 16 15 14 18 18 C 1.38326 * 119.98895 * 0.02562 * 17 16 15 19 19 Cl 1.73604 * 120.01167 * 179.97438 * 18 17 16 20 20 C 1.38183 * 119.99581 * 39.72943 * 14 12 11 21 21 C 1.50703 * 109.46943 * 206.13808 * 12 11 9 22 22 C 1.38221 * 119.61744 * 117.14110 * 21 12 11 23 23 C 1.38630 * 119.16387 * 180.27609 * 22 21 12 24 24 C 1.38677 * 118.41451 * 359.48000 * 23 22 21 25 25 C 1.38179 * 119.16464 * 0.47795 * 24 23 22 26 26 N 1.31851 * 119.62023 * 297.11641 * 21 12 11 27 27 H 0.97003 * 120.00054 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00157 * 0.02562 * 11 9 7 29 29 H 1.08003 * 119.98829 * 0.02562 * 15 14 12 30 30 H 1.07998 * 119.99723 * 180.02562 * 16 15 14 31 31 H 1.08004 * 119.99970 * 180.02562 * 17 16 15 32 32 H 1.08003 * 120.00488 * 0.02562 * 20 14 12 33 33 H 1.08003 * 120.42158 * 359.97438 * 22 21 12 34 34 H 1.07999 * 120.79624 * 179.71810 * 23 22 21 35 35 H 1.08000 * 120.41641 * 180.22136 * 24 23 22 36 36 H 1.07996 * 119.61987 * 179.77071 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0071 -1.2129 0.0005 8 1 3.0825 -1.2155 -0.0978 9 6 1.2813 -2.4769 0.1342 10 8 0.0644 -2.4826 0.1361 11 7 1.9607 -3.6345 0.2553 12 6 1.2343 -4.8998 0.3885 13 1 0.3135 -4.7330 0.9474 14 6 0.9012 -5.4343 -0.9805 15 6 -0.3293 -6.0206 -1.2129 16 6 -0.6354 -6.5116 -2.4682 17 6 0.2885 -6.4163 -3.4922 18 6 1.5196 -5.8299 -3.2602 19 17 2.6805 -5.7104 -4.5454 20 6 1.8233 -5.3335 -2.0047 21 6 2.0933 -5.8974 1.1220 22 6 1.6755 -6.3909 2.3437 23 6 2.4759 -7.3037 3.0130 24 6 3.6668 -7.6961 2.4206 25 6 4.0184 -7.1604 1.1963 26 7 3.2346 -6.2897 0.5908 27 1 -0.4850 0.8401 -0.0004 28 1 2.9307 -3.6300 0.2542 29 1 -1.0515 -6.0949 -0.4134 30 1 -1.5968 -6.9691 -2.6494 31 1 0.0490 -6.7996 -4.4730 32 1 2.7829 -4.8719 -1.8240 33 1 0.7397 -6.0657 2.7737 34 1 2.1772 -7.7028 3.9710 35 1 4.3133 -8.4082 2.9118 36 1 4.9460 -7.4579 0.7301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153992524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:36 Heat of formation + Delta-G solvation = -6.175940 kcal Electronic energy + Delta-G solvation = -23227.499922 eV Core-core repulsion = 19701.240936 eV Total energy + Delta-G solvation = -3526.258986 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51235 -40.17476 -39.10464 -37.43559 -35.86238 -34.54476 -33.30057 -32.48781 -31.68344 -31.53062 -28.72368 -26.86830 -24.50257 -23.78308 -23.44319 -22.50839 -21.16906 -19.46040 -18.15167 -17.77402 -17.41627 -17.21027 -16.64106 -16.40147 -16.32377 -15.78159 -15.54462 -14.98235 -14.74391 -14.59098 -14.43336 -14.26424 -14.07446 -13.76811 -13.38471 -13.13991 -12.79705 -12.72646 -12.62557 -12.49660 -12.33788 -12.21384 -12.02478 -11.81132 -10.93559 -10.79383 -10.39916 -10.16705 -9.80561 -9.75839 -9.59538 -9.51440 -8.29863 -6.84700 0.07447 0.25639 0.38450 0.43429 1.15626 1.38795 1.39471 1.55222 2.23655 2.46283 2.64487 2.81957 3.15469 3.33194 3.58500 3.80014 3.89527 3.99373 4.07507 4.15802 4.23204 4.27775 4.38936 4.42804 4.57287 4.69274 4.78429 4.85820 4.99497 5.23075 5.27953 5.30076 5.31980 5.37632 5.57639 5.80560 5.86999 5.88430 6.14767 6.25997 6.87210 7.08932 7.49391 8.48155 8.66545 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.009088 B = 0.005398 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3080.107888 B = 5185.790399 C = 6819.316086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.547 3.453 10 O -0.620 6.620 11 N -0.739 5.739 12 C 0.246 3.754 13 H 0.078 0.922 14 C -0.081 4.081 15 C -0.120 4.120 16 C -0.108 4.108 17 C -0.118 4.118 18 C -0.051 4.051 19 Cl -0.074 7.074 20 C -0.082 4.082 21 C 0.111 3.889 22 C -0.170 4.170 23 C -0.071 4.071 24 C -0.163 4.163 25 C 0.086 3.914 26 N -0.495 5.495 27 H 0.275 0.725 28 H 0.391 0.609 29 H 0.134 0.866 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.168 0.832 35 H 0.172 0.828 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.739 -17.016 1.368 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.181 4.181 3 Si 0.811 3.189 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.610 4.610 8 H 0.098 0.902 9 C 0.352 3.648 10 O -0.507 6.507 11 N -0.392 5.392 12 C 0.139 3.861 13 H 0.096 0.904 14 C -0.083 4.083 15 C -0.139 4.139 16 C -0.126 4.126 17 C -0.137 4.137 18 C -0.077 4.077 19 Cl -0.045 7.045 20 C -0.102 4.102 21 C -0.026 4.026 22 C -0.190 4.190 23 C -0.097 4.097 24 C -0.183 4.183 25 C -0.071 4.071 26 N -0.204 5.204 27 H 0.084 0.916 28 H 0.224 0.776 29 H 0.152 0.848 30 H 0.182 0.818 31 H 0.173 0.827 32 H 0.136 0.864 33 H 0.156 0.844 34 H 0.186 0.814 35 H 0.189 0.811 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.042 -16.567 0.460 17.324 hybrid contribution 0.441 0.690 0.607 1.019 sum 5.483 -15.877 1.067 16.831 Atomic orbital electron populations 1.70171 1.09288 1.28870 1.36261 1.26857 0.95484 1.04559 0.91245 0.85096 0.78996 0.75599 0.79187 1.18879 1.19408 1.17463 1.21349 0.94928 0.90420 1.54307 0.90201 1.18473 0.86806 0.83662 0.75905 1.90548 1.15680 1.87220 1.57221 1.45875 1.08918 1.04356 1.80029 1.18253 0.93932 0.82524 0.91384 0.90417 1.20261 0.94511 0.97715 0.95831 1.21374 0.95700 0.97972 0.98845 1.21370 1.00272 0.99421 0.91499 1.21305 0.91443 0.99726 1.01196 1.21039 0.92820 1.04303 0.89581 1.98328 1.59336 1.97115 1.49699 1.20725 0.99969 0.98347 0.91119 1.20940 0.92688 0.95978 0.93016 1.22144 1.02379 0.99235 0.95248 1.21961 0.93354 0.94057 1.00319 1.22548 0.97860 1.01377 0.96476 1.23288 0.98725 0.91918 0.93207 1.67347 1.04438 1.12830 1.35816 0.91552 0.77598 0.84810 0.81840 0.82675 0.86394 0.84372 0.81423 0.81079 0.80509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.12 11.85 21.84 0.26 -49.87 16 2 C 0.03 1.93 5.50 85.30 0.47 2.40 16 3 Si 0.99 41.84 29.56 68.60 2.03 43.86 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.57 -33.27 9.54 24.83 0.24 -33.03 16 8 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 9 C 0.55 32.01 7.71 86.36 0.67 32.67 16 10 O -0.62 -40.99 14.69 -4.30 -0.06 -41.06 16 11 N -0.74 -34.80 4.28 -454.00 -1.94 -36.74 16 12 C 0.25 9.97 2.51 43.50 0.11 10.07 16 13 H 0.08 3.43 7.12 -2.39 -0.02 3.42 16 14 C -0.08 -3.15 4.85 -19.87 -0.10 -3.25 16 15 C -0.12 -4.08 9.67 22.27 0.22 -3.87 16 16 C -0.11 -3.04 10.05 22.27 0.22 -2.81 16 17 C -0.12 -3.41 9.83 22.29 0.22 -3.19 16 18 C -0.05 -1.72 6.32 22.32 0.14 -1.58 16 19 Cl -0.07 -2.22 28.96 -2.72 -0.08 -2.30 16 20 C -0.08 -3.18 8.63 22.29 0.19 -2.98 16 21 C 0.11 3.66 5.61 42.55 0.24 3.90 16 22 C -0.17 -4.52 9.71 22.36 0.22 -4.31 16 23 C -0.07 -1.35 10.18 22.47 0.23 -1.12 16 24 C -0.16 -2.81 10.11 22.36 0.23 -2.58 16 25 C 0.09 1.94 11.18 84.67 0.95 2.89 16 26 N -0.49 -15.31 9.57 -183.90 -1.76 -17.07 16 27 H 0.27 15.25 8.29 -92.71 -0.77 14.48 16 28 H 0.39 17.28 8.51 -92.71 -0.79 16.49 16 29 H 0.13 4.12 8.04 -2.91 -0.02 4.09 16 30 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 32 H 0.12 4.80 7.71 -2.91 -0.02 4.78 16 33 H 0.14 3.46 7.95 -2.91 -0.02 3.43 16 34 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -78.33 337.38 3.01 -75.32 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.34 Total: 34.65 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 4.23 Total: -6.80 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -3.44 Total: -103.67 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.06 Total: -41.06 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.08 Total: -2.30 kcal Total: -78.33 3.01 -75.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153992524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.139 kcal (2) G-P(sol) polarization free energy of solvation -78.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds