Wall clock time and date at job start Tue Mar 31 2020 11:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 119.99948 * 2 1 4 4 H 1.48498 * 109.47019 * 275.40816 * 3 2 1 5 5 H 1.48493 * 109.47000 * 35.40791 * 3 2 1 6 6 H 1.48500 * 109.47040 * 155.40885 * 3 2 1 7 7 C 1.39939 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99809 * 341.74095 * 7 2 1 9 9 C 1.41429 * 119.99997 * 161.73565 * 7 2 1 10 10 C 1.40787 * 120.17898 * 330.17841 * 9 7 2 11 11 C 1.37712 * 120.03950 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41453 * 359.97438 * 11 10 9 13 13 C 1.39879 * 120.35589 * 359.97438 * 12 11 10 14 14 C 1.47889 * 120.02230 * 180.02562 * 13 12 11 15 15 O 1.21549 * 120.00033 * 180.02562 * 14 13 12 16 16 N 1.34777 * 120.00272 * 0.02562 * 14 13 12 17 17 N 1.40103 * 120.00013 * 179.97438 * 16 14 13 18 18 C 1.39733 * 119.99672 * 179.97438 * 17 16 14 19 19 C 1.38894 * 120.06680 * 359.72690 * 18 17 16 20 20 C 1.38115 * 119.94008 * 179.74131 * 19 18 17 21 21 C 1.38374 * 120.05905 * 0.51203 * 20 19 18 22 22 Cl 1.73601 * 119.93796 * 179.74129 * 21 20 19 23 23 C 1.38381 * 120.12875 * 359.76977 * 21 20 19 24 24 C 1.38114 * 120.05685 * 359.97165 * 23 21 20 25 25 C 1.39033 * 119.95088 * 0.02670 * 13 12 11 26 26 H 0.97006 * 119.99971 * 0.02562 * 1 2 3 27 27 H 1.07993 * 119.98166 * 0.02819 * 10 9 7 28 28 H 1.08002 * 119.79407 * 180.02562 * 11 10 9 29 29 H 1.08003 * 119.82249 * 180.02562 * 12 11 10 30 30 H 0.96998 * 120.00109 * 359.97438 * 16 14 13 31 31 H 0.96996 * 120.00004 * 0.02562 * 17 16 14 32 32 H 1.08004 * 120.03112 * 359.97438 * 19 18 17 33 33 H 1.08000 * 119.96562 * 180.25898 * 20 19 18 34 34 H 1.08001 * 119.97205 * 179.97438 * 23 21 20 35 35 H 1.08001 * 120.02824 * 179.97438 * 24 23 21 36 36 H 1.07996 * 120.20059 * 180.25241 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5015 2.6169 0.8112 6 1 3.5923 1.4099 0.5826 7 6 2.0080 -1.2119 0.0005 8 1 1.5088 -2.1235 0.2940 9 6 3.3688 -1.2429 -0.3833 10 6 3.8625 -0.3110 -1.3160 11 6 5.1880 -0.3441 -1.6881 12 6 6.0431 -1.2896 -1.1503 13 6 5.5709 -2.2228 -0.2214 14 6 6.4915 -3.2298 0.3492 15 8 6.0807 -4.0408 1.1559 16 7 7.7861 -3.2482 -0.0253 17 7 8.6583 -4.2018 0.5158 18 6 10.0004 -4.2212 0.1271 19 6 10.4698 -3.2994 -0.7997 20 6 11.7980 -3.3175 -1.1780 21 6 12.6584 -4.2596 -0.6425 22 17 14.3258 -4.2838 -1.1253 23 6 12.1923 -5.1831 0.2766 24 6 10.8662 -5.1662 0.6625 25 6 4.2355 -2.2030 0.1649 26 1 -0.4850 0.8401 -0.0004 27 1 3.2014 0.4303 -1.7399 28 1 5.5626 0.3730 -2.4036 29 1 7.0810 -1.3066 -1.4486 30 1 8.1140 -2.6012 -0.6693 31 1 8.3304 -4.8491 1.1595 32 1 9.7977 -2.5666 -1.2214 33 1 12.1644 -2.5982 -1.8955 34 1 12.8659 -5.9176 0.6927 35 1 10.5028 -5.8873 1.3797 36 1 3.8675 -2.9191 0.8847 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178844207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:10 Heat of formation + Delta-G solvation = 38.804264 kcal Electronic energy + Delta-G solvation = -21919.423462 eV Core-core repulsion = 18395.114964 eV Total energy + Delta-G solvation = -3524.308498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.21316 -39.24314 -37.56444 -36.74727 -35.60913 -33.85123 -32.32241 -31.30160 -30.60322 -30.15016 -28.02655 -25.33109 -23.86608 -22.99930 -22.03797 -20.84548 -20.49841 -18.83464 -17.75511 -17.13475 -16.65971 -16.29097 -15.53835 -15.11939 -14.97884 -14.81144 -14.37065 -14.14404 -13.87459 -13.81701 -13.68071 -12.94894 -12.86419 -12.62453 -12.42341 -12.15580 -11.78049 -11.74612 -11.18924 -11.13909 -10.99168 -10.91173 -10.67820 -10.15082 -9.89492 -9.70055 -9.37584 -9.33267 -9.31026 -8.06208 -7.91613 -7.36090 -7.11091 -4.66956 1.02308 1.06834 1.71581 1.88067 2.06403 2.38738 2.97641 3.10241 3.16843 3.34135 3.48430 3.83802 4.14064 4.34551 4.47438 4.60816 4.95687 5.06054 5.15763 5.19453 5.28559 5.61685 5.70189 5.83218 5.85736 5.93343 6.05275 6.22353 6.32403 6.49307 6.52336 6.72028 6.85430 7.05016 7.21605 7.31549 7.39548 7.60821 7.64155 7.81608 8.16585 8.39444 8.46899 8.59334 9.90541 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.031959 B = 0.002353 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.899964 B =11898.709334 C =12568.817099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.082 3.918 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.439 4.439 8 H 0.095 0.905 9 C 0.082 3.918 10 C -0.219 4.219 11 C -0.079 4.079 12 C -0.221 4.221 13 C -0.100 4.100 14 C 0.566 3.434 15 O -0.545 6.545 16 N -0.529 5.529 17 N -0.535 5.535 18 C 0.230 3.770 19 C -0.193 4.193 20 C -0.052 4.052 21 C -0.099 4.099 22 Cl -0.083 7.083 23 C -0.053 4.053 24 C -0.183 4.183 25 C -0.132 4.132 26 H 0.288 0.712 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.423 0.577 31 H 0.435 0.565 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.690 -4.121 -1.956 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.138 4.138 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.166 1.166 7 C -0.466 4.466 8 H 0.113 0.887 9 C 0.079 3.921 10 C -0.239 4.239 11 C -0.097 4.097 12 C -0.241 4.241 13 C -0.104 4.104 14 C 0.357 3.643 15 O -0.422 6.422 16 N -0.278 5.278 17 N -0.258 5.258 18 C 0.124 3.876 19 C -0.217 4.217 20 C -0.071 4.071 21 C -0.128 4.128 22 Cl -0.055 7.055 23 C -0.073 4.073 24 C -0.207 4.207 25 C -0.152 4.152 26 H 0.099 0.901 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.266 0.734 31 H 0.278 0.722 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 20.063 -4.480 -1.458 20.609 hybrid contribution 0.365 0.865 -0.190 0.958 sum 20.428 -3.615 -1.648 20.811 Atomic orbital electron populations 1.69685 1.08130 1.30588 1.33742 1.26199 0.94796 1.01857 0.90919 0.86300 0.81393 0.79620 0.78976 1.19428 1.21517 1.16623 1.19542 0.92840 0.96404 1.37853 0.88699 1.17683 0.93155 0.91020 0.90272 1.21208 0.95704 1.04256 1.02719 1.20506 0.93668 0.97146 0.98384 1.20330 0.97943 1.01028 1.04822 1.19111 0.93727 0.96690 1.00910 1.19001 0.79446 0.84764 0.81126 1.90725 1.76093 1.40792 1.34604 1.45077 1.05710 1.30563 1.46438 1.43429 1.02247 1.32226 1.47897 1.17858 0.82194 0.94312 0.93229 1.20419 0.96147 1.02413 1.02684 1.20744 0.91900 0.96581 0.97897 1.20581 0.85835 1.02130 1.04233 1.98346 1.17470 1.98347 1.91300 1.20719 0.94806 0.96894 0.94839 1.20382 0.92794 1.01766 1.05732 1.21241 0.90675 1.02022 1.01262 0.90142 0.87693 0.88010 0.88789 0.73374 0.72207 0.85565 0.84869 0.84805 0.84818 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.31 13.93 55.55 0.77 -19.53 16 2 C 0.08 2.05 5.40 -17.34 -0.09 1.96 16 3 Si 0.91 19.50 24.52 -169.99 -4.17 15.33 16 4 H -0.27 -5.50 6.71 56.52 0.38 -5.12 16 5 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.24 -5.31 6.86 56.52 0.39 -4.92 16 7 C -0.44 -11.30 9.57 -37.73 -0.36 -11.66 16 8 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 9 C 0.08 1.96 5.10 -106.87 -0.55 1.42 16 10 C -0.22 -4.84 7.17 -38.81 -0.28 -5.11 16 11 C -0.08 -1.50 10.01 -39.72 -0.40 -1.90 16 12 C -0.22 -3.95 9.55 -38.92 -0.37 -4.32 16 13 C -0.10 -1.98 5.87 -105.04 -0.62 -2.60 16 14 C 0.57 10.34 7.89 -12.31 -0.10 10.24 16 15 O -0.55 -11.39 16.17 5.32 0.09 -11.30 16 16 N -0.53 -7.49 6.17 30.54 0.19 -7.30 16 17 N -0.53 -6.65 6.45 32.42 0.21 -6.44 16 18 C 0.23 2.47 6.72 -83.77 -0.56 1.90 16 19 C -0.19 -1.93 9.48 -39.38 -0.37 -2.30 16 20 C -0.05 -0.48 9.82 -39.58 -0.39 -0.87 16 21 C -0.10 -0.93 6.32 -39.48 -0.25 -1.18 16 22 Cl -0.08 -0.75 28.95 -51.86 -1.50 -2.25 16 23 C -0.05 -0.46 9.82 -39.57 -0.39 -0.85 16 24 C -0.18 -1.66 9.90 -39.38 -0.39 -2.05 16 25 C -0.13 -2.99 9.34 -38.44 -0.36 -3.35 16 26 H 0.29 6.60 8.30 -40.82 -0.34 6.26 16 27 H 0.11 2.30 4.72 -52.49 -0.25 2.05 16 28 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.09 1.31 6.38 -52.48 -0.33 0.97 16 30 H 0.42 5.06 4.62 -182.60 -0.84 4.22 16 31 H 0.43 5.35 8.01 -182.60 -1.46 3.88 16 32 H 0.13 1.13 6.20 -52.48 -0.33 0.80 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 2.71 7.64 -52.49 -0.40 2.31 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -27.54 324.97 -9.89 -37.43 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.90 Total: 9.83 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -5.47 Total: -20.67 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 1.17 Total: -33.27 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.17 Total: 15.33 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.54 -9.89 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178844207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.231 kcal (2) G-P(sol) polarization free energy of solvation -27.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds