Wall clock time and date at job start Tue Mar 31 2020 11:30:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35927 * 117.00070 * 2 1
4 4 C 1.38705 * 120.06096 * 0.02562 * 3 2 1
5 5 C 1.38156 * 119.95811 * 179.97438 * 4 3 2
6 6 C 1.38274 * 120.07677 * 0.27646 * 5 4 3
7 7 C 1.50694 * 119.94276 * 179.72035 * 6 5 4
8 8 S 1.81402 * 109.47088 * 90.00125 * 7 6 5
9 9 O 1.42099 * 109.46993 * 63.61398 * 8 7 6
10 10 C 1.81397 * 102.99853 * 180.02562 * 8 7 6
11 11 C 1.53007 * 109.47034 * 179.97438 * 10 8 7
12 12 C 1.52997 * 109.47197 * 179.97438 * 11 10 8
13 13 C 1.50704 * 109.46983 * 179.97438 * 12 11 10
14 14 H 1.07997 * 119.99787 * 359.97438 * 13 12 11
15 15 C 1.37873 * 119.99862 * 180.02562 * 13 12 11
16 16 N 1.31516 * 120.00148 * 0.02562 * 15 13 12
17 17 Si 1.86802 * 119.99874 * 180.02562 * 15 13 12
18 18 H 1.48492 * 109.47198 * 59.99960 * 17 15 13
19 19 H 1.48503 * 109.46967 * 180.02562 * 17 15 13
20 20 H 1.48500 * 109.47137 * 299.99986 * 17 15 13
21 21 C 1.38255 * 120.11715 * 359.45007 * 6 5 4
22 22 C 1.38252 * 120.04067 * 0.54728 * 21 6 5
23 23 Cl 1.73606 * 120.03851 * 179.71018 * 22 21 6
24 24 H 1.08999 * 109.47024 * 59.99480 * 1 2 3
25 25 H 1.08994 * 109.47246 * 179.97438 * 1 2 3
26 26 H 1.09007 * 109.46730 * 299.99856 * 1 2 3
27 27 H 1.07996 * 120.02236 * 359.97438 * 4 3 2
28 28 H 1.08002 * 119.95893 * 179.97438 * 5 4 3
29 29 H 1.08996 * 109.47697 * 210.00093 * 7 6 5
30 30 H 1.09001 * 109.47145 * 329.99995 * 7 6 5
31 31 H 1.08998 * 109.47146 * 299.99289 * 10 8 7
32 32 H 1.08999 * 109.47619 * 60.00022 * 10 8 7
33 33 H 1.09003 * 109.47019 * 299.99875 * 11 10 8
34 34 H 1.08999 * 109.46863 * 59.99604 * 11 10 8
35 35 H 1.09003 * 109.47251 * 299.99999 * 12 11 10
36 36 H 1.09001 * 109.46811 * 60.00249 * 12 11 10
37 37 H 0.96998 * 119.99917 * 180.02562 * 16 15 13
38 38 H 1.08002 * 119.97420 * 180.29871 * 21 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0461 1.2111 0.0000
4 6 1.2919 2.3752 0.0005
5 6 1.9213 3.6050 0.0011
6 6 3.3022 3.6768 -0.0047
7 6 3.9856 5.0198 -0.0105
8 16 4.2668 5.5625 1.6975
9 8 5.1561 4.6601 2.3409
10 6 5.0826 7.1688 1.4861
11 6 5.3912 7.7688 2.8594
12 6 6.0799 9.1233 2.6812
13 6 6.3832 9.7145 4.0338
14 1 6.1115 9.1779 4.9308
15 6 7.0065 10.9407 4.1261
16 7 7.3361 11.5948 3.0338
17 14 7.3831 11.6732 5.8028
18 1 8.2798 10.7576 6.5529
19 1 8.0504 12.9886 5.6298
20 1 6.1180 11.8561 6.5586
21 6 4.0570 2.5185 0.0005
22 6 3.4323 1.2852 0.0000
23 17 4.3802 -0.1692 -0.0012
24 1 -0.3633 0.5139 -0.8899
25 1 -0.3633 -1.0276 -0.0005
26 1 -0.3633 0.5139 0.8901
27 1 0.2133 2.3203 0.0005
28 1 1.3341 4.5115 0.0011
29 1 4.9414 4.9390 -0.5280
30 1 3.3551 5.7461 -0.5234
31 1 6.0111 7.0345 0.9311
32 1 4.4244 7.8412 0.9359
33 1 4.4625 7.9031 3.4141
34 1 6.0493 7.0966 3.4100
35 1 7.0086 8.9886 2.1266
36 1 5.4220 9.7957 2.1304
37 1 7.7750 12.4574 3.0987
38 1 5.1355 2.5772 0.0008
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000179150605.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:40
Heat of formation + Delta-G solvation = -98.815543 kcal
Electronic energy + Delta-G solvation = -20566.566276 eV
Core-core repulsion = 17139.441336 eV
Total energy + Delta-G solvation = -3427.124940 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 316.069 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.20956 -38.76879 -37.48150 -36.78036 -36.28436 -34.00760 -33.08112 -31.92679
-29.45412 -28.83611 -27.09364 -25.32232 -23.78074 -22.64428 -21.89524 -19.25856
-18.67952 -18.23116 -17.54660 -16.94332 -16.79586 -16.64035 -16.31196 -16.09671
-15.63888 -15.34403 -14.95543 -14.88107 -14.40469 -14.29454 -14.16673 -13.87132
-13.33179 -13.08914 -13.03397 -12.76762 -12.67207 -12.59896 -12.49829 -12.43018
-12.13086 -12.03383 -11.85198 -11.73108 -11.57244 -11.30232 -10.80200 -10.55509
-9.94728 -9.39149 -8.87425 -8.20650 -6.32005 0.01524 0.10654 0.79738
1.13626 1.40007 1.43176 1.51023 1.78328 2.26202 2.40979 2.58958
2.89394 3.12109 3.60137 3.77277 3.99355 4.08231 4.10899 4.22847
4.25791 4.43693 4.46740 4.50462 4.65368 4.67304 4.80247 4.85738
4.88647 5.02281 5.18208 5.19462 5.21135 5.43302 5.50566 5.62303
5.71309 5.84249 6.23794 6.29990 6.84671 7.37241 8.90550
Molecular weight = 316.07amu
Principal moments of inertia in cm(-1)
A = 0.030901 B = 0.002199 C = 0.002150
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 905.912343 B =12729.937734 C =13017.551790
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.014 3.986
2 O -0.329 6.329
3 C 0.125 3.875
4 C -0.188 4.188
5 C -0.056 4.056
6 C -0.101 4.101
7 C -0.399 4.399
8 S 1.291 4.709
9 O -0.911 6.911
10 C -0.439 4.439
11 C -0.089 4.089
12 C 0.027 3.973
13 C -0.549 4.549
14 H 0.060 0.940
15 C -0.001 4.001
16 N -0.932 5.932
17 Si 0.964 3.036
18 H -0.274 1.274
19 H -0.282 1.282
20 H -0.260 1.260
21 C -0.088 4.088
22 C -0.092 4.092
23 Cl -0.075 7.075
24 H 0.074 0.926
25 H 0.115 0.885
26 H 0.073 0.927
27 H 0.178 0.822
28 H 0.189 0.811
29 H 0.085 0.915
30 H 0.178 0.822
31 H 0.061 0.939
32 H 0.149 0.851
33 H 0.086 0.914
34 H 0.027 0.973
35 H -0.022 1.022
36 H 0.010 0.990
37 H 0.264 0.736
38 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.569 -19.653 -10.268 30.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 O -0.243 6.243
3 C 0.078 3.922
4 C -0.206 4.206
5 C -0.075 4.075
6 C -0.103 4.103
7 C -0.535 4.535
8 S 1.494 4.506
9 O -0.907 6.907
10 C -0.576 4.576
11 C -0.128 4.128
12 C -0.011 4.011
13 C -0.587 4.587
14 H 0.078 0.922
15 C -0.199 4.199
16 N -0.573 5.573
17 Si 0.788 3.212
18 H -0.199 1.199
19 H -0.207 1.207
20 H -0.184 1.184
21 C -0.109 4.109
22 C -0.119 4.119
23 Cl -0.047 7.047
24 H 0.093 0.907
25 H 0.133 0.867
26 H 0.091 0.909
27 H 0.195 0.805
28 H 0.206 0.794
29 H 0.104 0.896
30 H 0.195 0.805
31 H 0.080 0.920
32 H 0.167 0.833
33 H 0.105 0.895
34 H 0.046 0.954
35 H -0.003 1.003
36 H 0.029 0.971
37 H 0.073 0.927
38 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -21.528 -20.295 -9.474 31.066
hybrid contribution 3.122 0.137 -0.512 3.167
sum -18.406 -20.158 -9.987 29.066
Atomic orbital electron populations
1.23463 0.75629 1.05836 1.03027 1.86141 1.24093 1.25901 1.88122
1.18907 0.89941 0.86611 0.96715 1.21656 1.02008 0.90418 1.06514
1.21535 0.92363 0.99647 0.93937 1.19144 0.94647 0.92005 1.04489
1.26654 1.06459 1.01041 1.19383 1.69740 1.10848 0.83712 0.86295
1.93013 1.69898 1.61094 1.66708 1.27709 1.09641 1.17156 1.03108
1.21117 1.00834 0.96541 0.94264 1.19024 0.94102 0.92498 0.95488
1.21732 1.38869 1.04068 0.94009 0.92218 1.25986 0.95421 0.97644
1.00822 1.70081 1.42201 1.15167 1.29811 0.85516 0.78973 0.77337
0.79343 1.19881 1.20728 1.18435 1.20900 1.00223 0.90781 0.98954
1.20310 0.89832 0.88193 1.13541 1.98344 1.72261 1.36793 1.97276
0.90724 0.86669 0.90863 0.80514 0.79351 0.89626 0.80477 0.92019
0.83335 0.89537 0.95382 1.00313 0.97129 0.92732 0.86598
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.10 9.81 113.37 1.11 1.21 16
2 O -0.33 -5.85 9.96 -92.72 -0.92 -6.77 16
3 C 0.13 2.41 6.68 22.52 0.15 2.56 16
4 C -0.19 -2.26 9.04 22.36 0.20 -2.05 16
5 C -0.06 -0.63 9.69 22.26 0.22 -0.42 16
6 C -0.10 -1.86 5.14 -19.85 -0.10 -1.97 16
7 C -0.40 -6.59 6.05 71.23 0.43 -6.16 16
8 S 1.29 30.03 13.14 -56.49 -0.74 29.28 16
9 O -0.91 -35.16 18.14 -148.98 -2.70 -37.86 16
10 C -0.44 -13.01 5.92 71.98 0.43 -12.58 16
11 C -0.09 -3.61 5.16 30.60 0.16 -3.45 16
12 C 0.03 1.43 4.97 29.85 0.15 1.58 16
13 C -0.55 -31.64 9.11 25.60 0.23 -31.41 16
14 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16
15 C 0.00 -0.05 5.46 84.65 0.46 0.41 16
16 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16
17 Si 0.96 44.54 29.54 68.60 2.03 46.57 16
18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16
19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
20 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16
21 C -0.09 -2.19 9.48 22.28 0.21 -1.98 16
22 C -0.09 -2.24 6.33 22.41 0.14 -2.09 16
23 Cl -0.08 -1.93 28.50 -2.72 -0.08 -2.01 16
24 H 0.07 0.28 7.66 -2.39 -0.02 0.26 16
25 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16
26 H 0.07 0.32 7.66 -2.38 -0.02 0.30 16
27 H 0.18 0.76 6.30 -2.91 -0.02 0.74 16
28 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16
29 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16
30 H 0.18 1.22 8.08 -2.39 -0.02 1.20 16
31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16
32 H 0.15 3.29 8.14 -2.39 -0.02 3.27 16
33 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16
34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16
35 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16
36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16
37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16
38 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16
Total: -1.00 -86.16 353.69 2.71 -83.46
By element:
Atomic # 1 Polarization: -0.75 SS G_CDS: 1.05 Total: 0.30 kcal
Atomic # 6 Polarization: -60.14 SS G_CDS: 3.79 Total: -56.35 kcal
Atomic # 7 Polarization: -56.91 SS G_CDS: 0.28 Total: -56.62 kcal
Atomic # 8 Polarization: -41.00 SS G_CDS: -3.63 Total: -44.63 kcal
Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal
Atomic # 16 Polarization: 30.03 SS G_CDS: -0.74 Total: 29.28 kcal
Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.01 kcal
Total: -86.16 2.71 -83.46 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000179150605.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.359 kcal
(2) G-P(sol) polarization free energy of solvation -86.164 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.523 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.457 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.816 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds