Wall clock time and date at job start Tue Mar 31 2020 11:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35927 * 117.00070 * 2 1 4 4 C 1.38705 * 120.06096 * 0.02562 * 3 2 1 5 5 C 1.38156 * 119.95811 * 179.97438 * 4 3 2 6 6 C 1.38274 * 120.07677 * 0.27646 * 5 4 3 7 7 C 1.50694 * 119.94276 * 179.72035 * 6 5 4 8 8 S 1.81402 * 109.47088 * 90.00125 * 7 6 5 9 9 O 1.42099 * 109.46993 * 63.61398 * 8 7 6 10 10 C 1.81397 * 102.99853 * 180.02562 * 8 7 6 11 11 C 1.53007 * 109.47034 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47197 * 179.97438 * 11 10 8 13 13 C 1.50704 * 109.46983 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99787 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99862 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00148 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99874 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47198 * 59.99960 * 17 15 13 19 19 H 1.48503 * 109.46967 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47137 * 299.99986 * 17 15 13 21 21 C 1.38255 * 120.11715 * 359.45007 * 6 5 4 22 22 C 1.38252 * 120.04067 * 0.54728 * 21 6 5 23 23 Cl 1.73606 * 120.03851 * 179.71018 * 22 21 6 24 24 H 1.08999 * 109.47024 * 59.99480 * 1 2 3 25 25 H 1.08994 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46730 * 299.99856 * 1 2 3 27 27 H 1.07996 * 120.02236 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.95893 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.47697 * 210.00093 * 7 6 5 30 30 H 1.09001 * 109.47145 * 329.99995 * 7 6 5 31 31 H 1.08998 * 109.47146 * 299.99289 * 10 8 7 32 32 H 1.08999 * 109.47619 * 60.00022 * 10 8 7 33 33 H 1.09003 * 109.47019 * 299.99875 * 11 10 8 34 34 H 1.08999 * 109.46863 * 59.99604 * 11 10 8 35 35 H 1.09003 * 109.47251 * 299.99999 * 12 11 10 36 36 H 1.09001 * 109.46811 * 60.00249 * 12 11 10 37 37 H 0.96998 * 119.99917 * 180.02562 * 16 15 13 38 38 H 1.08002 * 119.97420 * 180.29871 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2919 2.3752 0.0005 5 6 1.9213 3.6050 0.0011 6 6 3.3022 3.6768 -0.0047 7 6 3.9856 5.0198 -0.0105 8 16 4.2668 5.5625 1.6975 9 8 5.1561 4.6601 2.3409 10 6 5.0826 7.1688 1.4861 11 6 5.3912 7.7688 2.8594 12 6 6.0799 9.1233 2.6812 13 6 6.3832 9.7145 4.0338 14 1 6.1115 9.1779 4.9308 15 6 7.0065 10.9407 4.1261 16 7 7.3361 11.5948 3.0338 17 14 7.3831 11.6732 5.8028 18 1 8.2798 10.7576 6.5529 19 1 8.0504 12.9886 5.6298 20 1 6.1180 11.8561 6.5586 21 6 4.0570 2.5185 0.0005 22 6 3.4323 1.2852 0.0000 23 17 4.3802 -0.1692 -0.0012 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 0.2133 2.3203 0.0005 28 1 1.3341 4.5115 0.0011 29 1 4.9414 4.9390 -0.5280 30 1 3.3551 5.7461 -0.5234 31 1 6.0111 7.0345 0.9311 32 1 4.4244 7.8412 0.9359 33 1 4.4625 7.9031 3.4141 34 1 6.0493 7.0966 3.4100 35 1 7.0086 8.9886 2.1266 36 1 5.4220 9.7957 2.1304 37 1 7.7750 12.4574 3.0987 38 1 5.1355 2.5772 0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179150605.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:40 Heat of formation + Delta-G solvation = -98.815543 kcal Electronic energy + Delta-G solvation = -20566.566276 eV Core-core repulsion = 17139.441336 eV Total energy + Delta-G solvation = -3427.124940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.069 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20956 -38.76879 -37.48150 -36.78036 -36.28436 -34.00760 -33.08112 -31.92679 -29.45412 -28.83611 -27.09364 -25.32232 -23.78074 -22.64428 -21.89524 -19.25856 -18.67952 -18.23116 -17.54660 -16.94332 -16.79586 -16.64035 -16.31196 -16.09671 -15.63888 -15.34403 -14.95543 -14.88107 -14.40469 -14.29454 -14.16673 -13.87132 -13.33179 -13.08914 -13.03397 -12.76762 -12.67207 -12.59896 -12.49829 -12.43018 -12.13086 -12.03383 -11.85198 -11.73108 -11.57244 -11.30232 -10.80200 -10.55509 -9.94728 -9.39149 -8.87425 -8.20650 -6.32005 0.01524 0.10654 0.79738 1.13626 1.40007 1.43176 1.51023 1.78328 2.26202 2.40979 2.58958 2.89394 3.12109 3.60137 3.77277 3.99355 4.08231 4.10899 4.22847 4.25791 4.43693 4.46740 4.50462 4.65368 4.67304 4.80247 4.85738 4.88647 5.02281 5.18208 5.19462 5.21135 5.43302 5.50566 5.62303 5.71309 5.84249 6.23794 6.29990 6.84671 7.37241 8.90550 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.030901 B = 0.002199 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.912343 B =12729.937734 C =13017.551790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.125 3.875 4 C -0.188 4.188 5 C -0.056 4.056 6 C -0.101 4.101 7 C -0.399 4.399 8 S 1.291 4.709 9 O -0.911 6.911 10 C -0.439 4.439 11 C -0.089 4.089 12 C 0.027 3.973 13 C -0.549 4.549 14 H 0.060 0.940 15 C -0.001 4.001 16 N -0.932 5.932 17 Si 0.964 3.036 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.260 1.260 21 C -0.088 4.088 22 C -0.092 4.092 23 Cl -0.075 7.075 24 H 0.074 0.926 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.178 0.822 28 H 0.189 0.811 29 H 0.085 0.915 30 H 0.178 0.822 31 H 0.061 0.939 32 H 0.149 0.851 33 H 0.086 0.914 34 H 0.027 0.973 35 H -0.022 1.022 36 H 0.010 0.990 37 H 0.264 0.736 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.569 -19.653 -10.268 30.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.243 6.243 3 C 0.078 3.922 4 C -0.206 4.206 5 C -0.075 4.075 6 C -0.103 4.103 7 C -0.535 4.535 8 S 1.494 4.506 9 O -0.907 6.907 10 C -0.576 4.576 11 C -0.128 4.128 12 C -0.011 4.011 13 C -0.587 4.587 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.184 1.184 21 C -0.109 4.109 22 C -0.119 4.119 23 Cl -0.047 7.047 24 H 0.093 0.907 25 H 0.133 0.867 26 H 0.091 0.909 27 H 0.195 0.805 28 H 0.206 0.794 29 H 0.104 0.896 30 H 0.195 0.805 31 H 0.080 0.920 32 H 0.167 0.833 33 H 0.105 0.895 34 H 0.046 0.954 35 H -0.003 1.003 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.528 -20.295 -9.474 31.066 hybrid contribution 3.122 0.137 -0.512 3.167 sum -18.406 -20.158 -9.987 29.066 Atomic orbital electron populations 1.23463 0.75629 1.05836 1.03027 1.86141 1.24093 1.25901 1.88122 1.18907 0.89941 0.86611 0.96715 1.21656 1.02008 0.90418 1.06514 1.21535 0.92363 0.99647 0.93937 1.19144 0.94647 0.92005 1.04489 1.26654 1.06459 1.01041 1.19383 1.69740 1.10848 0.83712 0.86295 1.93013 1.69898 1.61094 1.66708 1.27709 1.09641 1.17156 1.03108 1.21117 1.00834 0.96541 0.94264 1.19024 0.94102 0.92498 0.95488 1.21732 1.38869 1.04068 0.94009 0.92218 1.25986 0.95421 0.97644 1.00822 1.70081 1.42201 1.15167 1.29811 0.85516 0.78973 0.77337 0.79343 1.19881 1.20728 1.18435 1.20900 1.00223 0.90781 0.98954 1.20310 0.89832 0.88193 1.13541 1.98344 1.72261 1.36793 1.97276 0.90724 0.86669 0.90863 0.80514 0.79351 0.89626 0.80477 0.92019 0.83335 0.89537 0.95382 1.00313 0.97129 0.92732 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.33 -5.85 9.96 -92.72 -0.92 -6.77 16 3 C 0.13 2.41 6.68 22.52 0.15 2.56 16 4 C -0.19 -2.26 9.04 22.36 0.20 -2.05 16 5 C -0.06 -0.63 9.69 22.26 0.22 -0.42 16 6 C -0.10 -1.86 5.14 -19.85 -0.10 -1.97 16 7 C -0.40 -6.59 6.05 71.23 0.43 -6.16 16 8 S 1.29 30.03 13.14 -56.49 -0.74 29.28 16 9 O -0.91 -35.16 18.14 -148.98 -2.70 -37.86 16 10 C -0.44 -13.01 5.92 71.98 0.43 -12.58 16 11 C -0.09 -3.61 5.16 30.60 0.16 -3.45 16 12 C 0.03 1.43 4.97 29.85 0.15 1.58 16 13 C -0.55 -31.64 9.11 25.60 0.23 -31.41 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 15 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 16 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 17 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 21 C -0.09 -2.19 9.48 22.28 0.21 -1.98 16 22 C -0.09 -2.24 6.33 22.41 0.14 -2.09 16 23 Cl -0.08 -1.93 28.50 -2.72 -0.08 -2.01 16 24 H 0.07 0.28 7.66 -2.39 -0.02 0.26 16 25 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.07 0.32 7.66 -2.38 -0.02 0.30 16 27 H 0.18 0.76 6.30 -2.91 -0.02 0.74 16 28 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16 29 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 30 H 0.18 1.22 8.08 -2.39 -0.02 1.20 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.15 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -86.16 353.69 2.71 -83.46 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: 1.05 Total: 0.30 kcal Atomic # 6 Polarization: -60.14 SS G_CDS: 3.79 Total: -56.35 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -3.63 Total: -44.63 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 30.03 SS G_CDS: -0.74 Total: 29.28 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.01 kcal Total: -86.16 2.71 -83.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179150605.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.359 kcal (2) G-P(sol) polarization free energy of solvation -86.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds