Wall clock time and date at job start Tue Mar 31 2020 10:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34912 * 125.62589 * 2 1 4 4 C 1.40680 * 107.09179 * 180.02562 * 3 2 1 5 5 C 1.36459 * 106.71095 * 0.02562 * 4 3 2 6 6 C 1.46881 * 125.96828 * 180.02562 * 5 4 3 7 7 C 1.36980 * 125.15983 * 179.97438 * 6 5 4 8 8 C 1.36539 * 114.73569 * 179.72713 * 7 6 5 9 9 C 1.36949 * 114.74337 * 0.46330 * 8 7 6 10 10 C 1.46147 * 125.16310 * 179.82885 * 9 8 7 11 11 O 1.21812 * 119.99484 * 353.09580 * 10 9 8 12 12 N 1.34772 * 120.00357 * 173.09803 * 10 9 8 13 13 C 1.36845 * 120.00134 * 4.11814 * 12 10 9 14 14 H 1.07999 * 120.00088 * 308.07695 * 13 12 10 15 15 C 1.38977 * 119.99909 * 128.07173 * 13 12 10 16 16 N 1.31415 * 120.00049 * 3.91441 * 15 13 12 17 17 Si 1.86805 * 120.00098 * 183.91322 * 15 13 12 18 18 H 1.48493 * 109.47225 * 89.99926 * 17 15 13 19 19 H 1.48501 * 109.47319 * 210.00365 * 17 15 13 20 20 H 1.48501 * 109.46943 * 329.99986 * 17 15 13 21 21 C 1.46504 * 120.00080 * 184.12109 * 12 10 9 22 22 C 1.47203 * 109.46946 * 84.59340 * 21 12 10 23 23 N 9.06552 * 139.15620 * 27.16869 * 4 1 2 24 24 S 1.75829 * 125.16623 * 359.97438 * 6 5 4 25 25 O 1.34267 * 125.62832 * 180.34051 * 2 1 3 26 26 H 1.08997 * 109.47280 * 89.99534 * 1 2 3 27 27 H 1.09001 * 109.46913 * 210.00061 * 1 2 3 28 28 H 1.09000 * 109.46931 * 329.99726 * 1 2 3 29 29 H 1.07995 * 126.45496 * 0.02562 * 3 2 1 30 30 H 1.07999 * 126.64764 * 180.02562 * 4 3 2 31 31 H 1.08001 * 122.63093 * 0.02562 * 7 6 5 32 32 H 1.07997 * 122.63201 * 180.27200 * 8 7 6 33 33 H 0.97003 * 119.99700 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47193 * 204.59783 * 21 12 10 35 35 H 1.09000 * 109.47009 * 324.60092 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2929 1.0966 0.0000 4 6 3.6267 0.6494 -0.0006 5 6 3.5833 -0.7145 -0.0015 6 6 4.7440 -1.6145 -0.0019 7 6 4.6811 -2.9829 -0.0023 8 6 5.8937 -3.6105 -0.0085 9 6 6.9745 -2.7695 -0.0031 10 6 8.3725 -3.1956 -0.0044 11 8 8.6496 -4.3756 0.1163 12 7 9.3550 -2.2830 -0.1390 13 6 9.0487 -0.9502 -0.1899 14 1 8.3064 -0.5930 -0.8882 15 6 9.6928 -0.0564 0.6573 16 7 10.6500 -0.4784 1.4527 17 14 9.1980 1.7449 0.6653 18 1 8.1211 1.9580 1.6653 19 1 10.3741 2.5798 1.0189 20 1 8.7054 2.1289 -0.6820 21 6 10.7510 -2.7177 -0.2310 22 6 11.0653 -3.0668 -1.6261 23 7 11.3071 -3.3363 -2.7041 24 16 6.4251 -1.0992 -0.0018 25 8 2.2891 -1.0913 -0.0065 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.9606 2.1242 0.0004 30 1 4.5133 1.2661 -0.0004 31 1 3.7458 -3.5229 -0.0028 32 1 5.9927 -4.6859 -0.0138 33 1 11.0998 0.1456 2.0437 34 1 11.4054 -1.9105 0.0978 35 1 10.9025 -3.5901 0.4047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181141413.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:00 Heat of formation + Delta-G solvation = 26.863293 kcal Electronic energy + Delta-G solvation = -22761.933121 eV Core-core repulsion = 19239.150531 eV Total energy + Delta-G solvation = -3522.782591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.47403 -40.77647 -38.37534 -37.46331 -36.61898 -34.17957 -33.73616 -33.36897 -31.11145 -29.47023 -27.61848 -26.57037 -24.76260 -22.96039 -22.10135 -21.55738 -20.60921 -19.74254 -18.99928 -17.73433 -17.35823 -17.23111 -17.06984 -16.43892 -16.22929 -15.78909 -15.55635 -15.03381 -14.73117 -14.46085 -14.11588 -13.98686 -13.89856 -13.85118 -13.80357 -13.48192 -13.34147 -13.28265 -13.15288 -13.01958 -12.87341 -12.59341 -12.33369 -12.04070 -11.70346 -11.01632 -10.99476 -10.77062 -10.28046 -9.72977 -9.36422 -8.62188 -8.50925 -6.50506 -0.72236 0.55801 0.75657 1.13494 1.42298 1.43582 1.48729 1.57401 1.61091 1.79288 1.93270 2.09751 2.23139 2.38663 2.83596 2.89487 3.36444 3.62077 3.94555 4.04453 4.17323 4.40869 4.49478 4.61295 4.62056 4.74558 4.76855 4.82762 4.96221 5.01103 5.07522 5.18419 5.26215 5.37907 5.45596 5.61971 5.76466 6.13762 6.14854 6.53902 6.84867 7.19405 7.66313 8.51129 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.004496 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.189642 B = 6226.474199 C = 7523.955486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.015 4.015 3 C -0.214 4.214 4 C -0.196 4.196 5 C 0.034 3.966 6 C -0.194 4.194 7 C -0.140 4.140 8 C -0.081 4.081 9 C -0.257 4.257 10 C 0.546 3.454 11 O -0.608 6.608 12 N -0.444 5.444 13 C -0.369 4.369 14 H 0.104 0.896 15 C 0.045 3.955 16 N -0.862 5.862 17 Si 0.946 3.054 18 H -0.254 1.254 19 H -0.268 1.268 20 H -0.250 1.250 21 C 0.208 3.792 22 C 0.226 3.774 23 N -0.489 5.489 24 S 0.311 5.689 25 O -0.184 6.184 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.180 0.820 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.289 0.711 34 H 0.153 0.847 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.268 7.735 1.764 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.066 4.066 3 C -0.233 4.233 4 C -0.217 4.217 5 C -0.017 4.017 6 C -0.312 4.312 7 C -0.169 4.169 8 C -0.115 4.115 9 C -0.378 4.378 10 C 0.337 3.663 11 O -0.495 6.495 12 N -0.163 5.163 13 C -0.502 4.502 14 H 0.121 0.879 15 C -0.165 4.165 16 N -0.494 5.494 17 Si 0.766 3.234 18 H -0.178 1.178 19 H -0.192 1.192 20 H -0.173 1.173 21 C 0.082 3.918 22 C -0.092 4.092 23 N -0.169 5.169 24 S 0.587 5.413 25 O -0.082 6.082 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.197 0.803 30 H 0.174 0.826 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.100 0.900 34 H 0.170 0.830 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.003 7.933 0.394 16.099 hybrid contribution -0.340 -0.792 0.439 0.967 sum -14.343 7.141 0.833 16.044 Atomic orbital electron populations 1.20541 0.81798 1.05500 1.04872 1.23501 0.95728 0.83403 1.03994 1.21806 0.91370 1.00882 1.09211 1.22139 0.99918 0.92707 1.06948 1.19473 0.80900 0.92316 1.08977 1.24334 1.00077 0.96899 1.09878 1.20344 0.98702 0.92319 1.05583 1.20386 0.90196 1.01009 0.99872 1.24416 0.96940 0.98789 1.17668 1.17722 0.84882 0.85359 0.78354 1.90687 1.84244 1.18384 1.56206 1.43168 1.03320 1.06183 1.63599 1.19520 1.25978 0.82019 1.22664 0.87943 1.26242 0.94091 1.03870 0.92321 1.69656 1.20390 1.38416 1.20964 0.85586 0.79704 0.77246 0.80842 1.17791 1.19238 1.17337 1.19209 0.86861 1.03556 0.82154 1.30724 0.91688 0.90702 0.96076 1.81037 1.10429 1.12084 1.13308 1.85139 0.88136 1.02996 1.64985 1.84015 1.15961 1.36286 1.71921 0.88579 0.90043 0.86841 0.80306 0.82597 0.83225 0.83611 0.90002 0.83011 0.87198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.41 71.24 0.74 -0.08 16 2 C -0.02 -0.33 7.32 24.92 0.18 -0.15 16 3 C -0.21 -4.73 10.77 22.10 0.24 -4.49 16 4 C -0.20 -5.46 10.62 22.45 0.24 -5.22 16 5 C 0.03 1.09 7.12 24.12 0.17 1.26 16 6 C -0.19 -6.77 6.45 24.24 0.16 -6.62 16 7 C -0.14 -4.78 10.12 21.58 0.22 -4.56 16 8 C -0.08 -3.08 9.88 21.57 0.21 -2.87 16 9 C -0.26 -10.93 6.29 24.02 0.15 -10.78 16 10 C 0.55 26.04 7.52 86.30 0.65 26.69 16 11 O -0.61 -31.35 16.47 -4.71 -0.08 -31.43 16 12 N -0.44 -20.38 2.44 -650.53 -1.59 -21.97 16 13 C -0.37 -16.22 6.70 84.09 0.56 -15.66 16 14 H 0.10 4.42 5.44 -15.53 -0.08 4.33 16 15 C 0.05 1.91 5.34 84.93 0.45 2.36 16 16 N -0.86 -37.47 11.26 21.67 0.24 -37.23 16 17 Si 0.95 32.64 29.56 68.60 2.03 34.66 16 18 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 19 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16 20 H -0.25 -8.31 7.11 99.48 0.71 -7.60 16 21 C 0.21 8.80 5.35 84.57 0.45 9.25 16 22 C 0.23 9.80 15.72 89.43 1.41 11.21 16 23 N -0.49 -22.22 18.55 20.02 0.37 -21.84 16 24 S 0.31 11.58 18.26 -56.49 -1.03 10.55 16 25 O -0.18 -5.41 10.66 -6.96 -0.07 -5.48 16 26 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.16 4.03 8.06 -2.91 -0.02 4.00 16 31 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.15 5.31 8.04 -2.91 -0.02 5.29 16 33 H 0.29 11.69 8.31 -92.71 -0.77 10.92 16 34 H 0.15 6.32 5.84 -2.39 -0.01 6.31 16 35 H 0.11 4.51 7.53 -2.39 -0.02 4.50 16 Total: -1.00 -58.00 331.86 6.79 -51.21 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 1.08 Total: 21.19 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 5.83 Total: 0.34 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -0.97 Total: -81.04 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.15 Total: -36.91 kcal Atomic # 14 Polarization: 32.64 SS G_CDS: 2.03 Total: 34.66 kcal Atomic # 16 Polarization: 11.58 SS G_CDS: -1.03 Total: 10.55 kcal Total: -58.00 6.79 -51.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181141413.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.072 kcal (2) G-P(sol) polarization free energy of solvation -57.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds