Wall clock time and date at job start Tue Mar 31 2020 10:57:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.34912 * 125.62589 * 2 1
4 4 C 1.40680 * 107.09179 * 180.02562 * 3 2 1
5 5 C 1.36459 * 106.71095 * 0.02562 * 4 3 2
6 6 C 1.46881 * 125.96828 * 180.02562 * 5 4 3
7 7 C 1.36980 * 125.15983 * 179.97438 * 6 5 4
8 8 C 1.36539 * 114.73569 * 179.72713 * 7 6 5
9 9 C 1.36949 * 114.74337 * 0.46330 * 8 7 6
10 10 C 1.46147 * 125.16310 * 179.82885 * 9 8 7
11 11 O 1.21812 * 119.99484 * 353.09580 * 10 9 8
12 12 N 1.34772 * 120.00357 * 173.09803 * 10 9 8
13 13 C 1.36845 * 120.00134 * 4.11814 * 12 10 9
14 14 H 1.07999 * 120.00088 * 308.07695 * 13 12 10
15 15 C 1.38977 * 119.99909 * 128.07173 * 13 12 10
16 16 N 1.31415 * 120.00049 * 3.91441 * 15 13 12
17 17 Si 1.86805 * 120.00098 * 183.91322 * 15 13 12
18 18 H 1.48493 * 109.47225 * 89.99926 * 17 15 13
19 19 H 1.48501 * 109.47319 * 210.00365 * 17 15 13
20 20 H 1.48501 * 109.46943 * 329.99986 * 17 15 13
21 21 C 1.46504 * 120.00080 * 184.12109 * 12 10 9
22 22 C 1.47203 * 109.46946 * 84.59340 * 21 12 10
23 23 N 9.06552 * 139.15620 * 27.16869 * 4 1 2
24 24 S 1.75829 * 125.16623 * 359.97438 * 6 5 4
25 25 O 1.34267 * 125.62832 * 180.34051 * 2 1 3
26 26 H 1.08997 * 109.47280 * 89.99534 * 1 2 3
27 27 H 1.09001 * 109.46913 * 210.00061 * 1 2 3
28 28 H 1.09000 * 109.46931 * 329.99726 * 1 2 3
29 29 H 1.07995 * 126.45496 * 0.02562 * 3 2 1
30 30 H 1.07999 * 126.64764 * 180.02562 * 4 3 2
31 31 H 1.08001 * 122.63093 * 0.02562 * 7 6 5
32 32 H 1.07997 * 122.63201 * 180.27200 * 8 7 6
33 33 H 0.97003 * 119.99700 * 179.97438 * 16 15 13
34 34 H 1.08995 * 109.47193 * 204.59783 * 21 12 10
35 35 H 1.09000 * 109.47009 * 324.60092 * 21 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2929 1.0966 0.0000
4 6 3.6267 0.6494 -0.0006
5 6 3.5833 -0.7145 -0.0015
6 6 4.7440 -1.6145 -0.0019
7 6 4.6811 -2.9829 -0.0023
8 6 5.8937 -3.6105 -0.0085
9 6 6.9745 -2.7695 -0.0031
10 6 8.3725 -3.1956 -0.0044
11 8 8.6496 -4.3756 0.1163
12 7 9.3550 -2.2830 -0.1390
13 6 9.0487 -0.9502 -0.1899
14 1 8.3064 -0.5930 -0.8882
15 6 9.6928 -0.0564 0.6573
16 7 10.6500 -0.4784 1.4527
17 14 9.1980 1.7449 0.6653
18 1 8.1211 1.9580 1.6653
19 1 10.3741 2.5798 1.0189
20 1 8.7054 2.1289 -0.6820
21 6 10.7510 -2.7177 -0.2310
22 6 11.0653 -3.0668 -1.6261
23 7 11.3071 -3.3363 -2.7041
24 16 6.4251 -1.0992 -0.0018
25 8 2.2891 -1.0913 -0.0065
26 1 -0.3634 0.0001 -1.0276
27 1 -0.3633 -0.8900 0.5139
28 1 -0.3633 0.8900 0.5139
29 1 1.9606 2.1242 0.0004
30 1 4.5133 1.2661 -0.0004
31 1 3.7458 -3.5229 -0.0028
32 1 5.9927 -4.6859 -0.0138
33 1 11.0998 0.1456 2.0437
34 1 11.4054 -1.9105 0.0978
35 1 10.9025 -3.5901 0.4047
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000181141413.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:57:00
Heat of formation + Delta-G solvation = 26.863293 kcal
Electronic energy + Delta-G solvation = -22761.933121 eV
Core-core repulsion = 19239.150531 eV
Total energy + Delta-G solvation = -3522.782591 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 316.067 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-43.47403 -40.77647 -38.37534 -37.46331 -36.61898 -34.17957 -33.73616 -33.36897
-31.11145 -29.47023 -27.61848 -26.57037 -24.76260 -22.96039 -22.10135 -21.55738
-20.60921 -19.74254 -18.99928 -17.73433 -17.35823 -17.23111 -17.06984 -16.43892
-16.22929 -15.78909 -15.55635 -15.03381 -14.73117 -14.46085 -14.11588 -13.98686
-13.89856 -13.85118 -13.80357 -13.48192 -13.34147 -13.28265 -13.15288 -13.01958
-12.87341 -12.59341 -12.33369 -12.04070 -11.70346 -11.01632 -10.99476 -10.77062
-10.28046 -9.72977 -9.36422 -8.62188 -8.50925 -6.50506 -0.72236 0.55801
0.75657 1.13494 1.42298 1.43582 1.48729 1.57401 1.61091 1.79288
1.93270 2.09751 2.23139 2.38663 2.83596 2.89487 3.36444 3.62077
3.94555 4.04453 4.17323 4.40869 4.49478 4.61295 4.62056 4.74558
4.76855 4.82762 4.96221 5.01103 5.07522 5.18419 5.26215 5.37907
5.45596 5.61971 5.76466 6.13762 6.14854 6.53902 6.84867 7.19405
7.66313 8.51129
Molecular weight = 316.07amu
Principal moments of inertia in cm(-1)
A = 0.015751 B = 0.004496 C = 0.003721
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1777.189642 B = 6226.474199 C = 7523.955486
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C -0.015 4.015
3 C -0.214 4.214
4 C -0.196 4.196
5 C 0.034 3.966
6 C -0.194 4.194
7 C -0.140 4.140
8 C -0.081 4.081
9 C -0.257 4.257
10 C 0.546 3.454
11 O -0.608 6.608
12 N -0.444 5.444
13 C -0.369 4.369
14 H 0.104 0.896
15 C 0.045 3.955
16 N -0.862 5.862
17 Si 0.946 3.054
18 H -0.254 1.254
19 H -0.268 1.268
20 H -0.250 1.250
21 C 0.208 3.792
22 C 0.226 3.774
23 N -0.489 5.489
24 S 0.311 5.689
25 O -0.184 6.184
26 H 0.096 0.904
27 H 0.081 0.919
28 H 0.113 0.887
29 H 0.180 0.820
30 H 0.156 0.844
31 H 0.150 0.850
32 H 0.146 0.854
33 H 0.289 0.711
34 H 0.153 0.847
35 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.268 7.735 1.764 17.206
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.066 4.066
3 C -0.233 4.233
4 C -0.217 4.217
5 C -0.017 4.017
6 C -0.312 4.312
7 C -0.169 4.169
8 C -0.115 4.115
9 C -0.378 4.378
10 C 0.337 3.663
11 O -0.495 6.495
12 N -0.163 5.163
13 C -0.502 4.502
14 H 0.121 0.879
15 C -0.165 4.165
16 N -0.494 5.494
17 Si 0.766 3.234
18 H -0.178 1.178
19 H -0.192 1.192
20 H -0.173 1.173
21 C 0.082 3.918
22 C -0.092 4.092
23 N -0.169 5.169
24 S 0.587 5.413
25 O -0.082 6.082
26 H 0.114 0.886
27 H 0.100 0.900
28 H 0.132 0.868
29 H 0.197 0.803
30 H 0.174 0.826
31 H 0.168 0.832
32 H 0.164 0.836
33 H 0.100 0.900
34 H 0.170 0.830
35 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -14.003 7.933 0.394 16.099
hybrid contribution -0.340 -0.792 0.439 0.967
sum -14.343 7.141 0.833 16.044
Atomic orbital electron populations
1.20541 0.81798 1.05500 1.04872 1.23501 0.95728 0.83403 1.03994
1.21806 0.91370 1.00882 1.09211 1.22139 0.99918 0.92707 1.06948
1.19473 0.80900 0.92316 1.08977 1.24334 1.00077 0.96899 1.09878
1.20344 0.98702 0.92319 1.05583 1.20386 0.90196 1.01009 0.99872
1.24416 0.96940 0.98789 1.17668 1.17722 0.84882 0.85359 0.78354
1.90687 1.84244 1.18384 1.56206 1.43168 1.03320 1.06183 1.63599
1.19520 1.25978 0.82019 1.22664 0.87943 1.26242 0.94091 1.03870
0.92321 1.69656 1.20390 1.38416 1.20964 0.85586 0.79704 0.77246
0.80842 1.17791 1.19238 1.17337 1.19209 0.86861 1.03556 0.82154
1.30724 0.91688 0.90702 0.96076 1.81037 1.10429 1.12084 1.13308
1.85139 0.88136 1.02996 1.64985 1.84015 1.15961 1.36286 1.71921
0.88579 0.90043 0.86841 0.80306 0.82597 0.83225 0.83611 0.90002
0.83011 0.87198
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.83 10.41 71.24 0.74 -0.08 16
2 C -0.02 -0.33 7.32 24.92 0.18 -0.15 16
3 C -0.21 -4.73 10.77 22.10 0.24 -4.49 16
4 C -0.20 -5.46 10.62 22.45 0.24 -5.22 16
5 C 0.03 1.09 7.12 24.12 0.17 1.26 16
6 C -0.19 -6.77 6.45 24.24 0.16 -6.62 16
7 C -0.14 -4.78 10.12 21.58 0.22 -4.56 16
8 C -0.08 -3.08 9.88 21.57 0.21 -2.87 16
9 C -0.26 -10.93 6.29 24.02 0.15 -10.78 16
10 C 0.55 26.04 7.52 86.30 0.65 26.69 16
11 O -0.61 -31.35 16.47 -4.71 -0.08 -31.43 16
12 N -0.44 -20.38 2.44 -650.53 -1.59 -21.97 16
13 C -0.37 -16.22 6.70 84.09 0.56 -15.66 16
14 H 0.10 4.42 5.44 -15.53 -0.08 4.33 16
15 C 0.05 1.91 5.34 84.93 0.45 2.36 16
16 N -0.86 -37.47 11.26 21.67 0.24 -37.23 16
17 Si 0.95 32.64 29.56 68.60 2.03 34.66 16
18 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16
19 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16
20 H -0.25 -8.31 7.11 99.48 0.71 -7.60 16
21 C 0.21 8.80 5.35 84.57 0.45 9.25 16
22 C 0.23 9.80 15.72 89.43 1.41 11.21 16
23 N -0.49 -22.22 18.55 20.02 0.37 -21.84 16
24 S 0.31 11.58 18.26 -56.49 -1.03 10.55 16
25 O -0.18 -5.41 10.66 -6.96 -0.07 -5.48 16
26 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16
27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
28 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16
29 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16
30 H 0.16 4.03 8.06 -2.91 -0.02 4.00 16
31 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16
32 H 0.15 5.31 8.04 -2.91 -0.02 5.29 16
33 H 0.29 11.69 8.31 -92.71 -0.77 10.92 16
34 H 0.15 6.32 5.84 -2.39 -0.01 6.31 16
35 H 0.11 4.51 7.53 -2.39 -0.02 4.50 16
Total: -1.00 -58.00 331.86 6.79 -51.21
By element:
Atomic # 1 Polarization: 20.11 SS G_CDS: 1.08 Total: 21.19 kcal
Atomic # 6 Polarization: -5.49 SS G_CDS: 5.83 Total: 0.34 kcal
Atomic # 7 Polarization: -80.07 SS G_CDS: -0.97 Total: -81.04 kcal
Atomic # 8 Polarization: -36.76 SS G_CDS: -0.15 Total: -36.91 kcal
Atomic # 14 Polarization: 32.64 SS G_CDS: 2.03 Total: 34.66 kcal
Atomic # 16 Polarization: 11.58 SS G_CDS: -1.03 Total: 10.55 kcal
Total: -58.00 6.79 -51.21 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000181141413.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.072 kcal
(2) G-P(sol) polarization free energy of solvation -57.998 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.074 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.789 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.209 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.863 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds