Wall clock time and date at job start Tue Mar 31 2020 12:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86810 * 119.99680 * 2 1 4 4 H 1.48500 * 109.47065 * 270.00227 * 3 2 1 5 5 H 1.48507 * 109.46956 * 30.00259 * 3 2 1 6 6 H 1.48497 * 109.46810 * 150.00163 * 3 2 1 7 7 C 1.37871 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00116 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00323 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47383 * 179.97438 * 9 7 2 11 11 C 1.34977 * 125.97013 * 124.97616 * 10 9 7 12 12 C 1.35238 * 107.86346 * 179.76542 * 11 10 9 13 13 C 1.40424 * 107.86356 * 0.37387 * 12 11 10 14 14 N 1.40074 * 125.97355 * 179.88998 * 13 12 11 15 15 C 1.34777 * 119.99915 * 359.70885 * 14 13 12 16 16 O 1.21753 * 120.00056 * 0.02562 * 15 14 13 17 17 C 1.46426 * 120.00047 * 180.27555 * 15 14 13 18 18 C 1.37482 * 125.80574 * 179.41571 * 17 15 14 19 19 C 1.40657 * 107.55347 * 179.84605 * 18 17 15 20 20 S 1.76028 * 142.39688 * 180.02562 * 19 18 17 21 21 C 1.75587 * 91.31222 * 180.37882 * 20 19 18 22 22 C 1.32773 * 110.47523 * 0.02562 * 21 20 19 23 23 C 1.38247 * 108.03723 * 0.42407 * 19 18 17 24 24 N 1.37912 * 125.80476 * 359.72977 * 17 15 14 25 25 H 0.97005 * 125.68825 * 359.97438 * 24 17 15 26 26 N 1.31232 * 108.05416 * 359.62030 * 13 12 11 27 27 H 0.96997 * 120.00094 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46680 * 59.99866 * 9 7 2 29 29 H 1.08998 * 109.47262 * 300.00755 * 9 7 2 30 30 H 1.07995 * 126.06814 * 0.02562 * 11 10 9 31 31 H 1.08000 * 126.06764 * 180.26480 * 12 11 10 32 32 H 0.97000 * 120.00348 * 179.71641 * 14 13 12 33 33 H 1.08002 * 126.22677 * 0.02562 * 18 17 15 34 34 H 1.08003 * 124.76548 * 180.02562 * 21 20 19 35 35 H 1.08005 * 122.16579 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6528 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2513 -2.4991 -0.0005 10 7 2.2033 -3.6125 -0.0018 11 6 2.2433 -4.6225 0.8928 12 6 3.2582 -5.4455 0.5443 13 6 3.8686 -4.9145 -0.6035 14 7 4.9626 -5.4652 -1.2831 15 6 5.5274 -6.6054 -0.8389 16 8 5.0864 -7.1570 0.1529 17 6 6.6749 -7.1779 -1.5458 18 6 7.3473 -8.3238 -1.1924 19 6 8.3752 -8.5194 -2.1324 20 16 9.6967 -9.6054 -2.5481 21 6 10.1253 -8.6181 -3.9353 22 6 9.3119 -7.5730 -4.0307 23 6 8.3236 -7.4824 -3.0452 24 7 7.2687 -6.6559 -2.6758 25 1 6.9955 -5.8471 -3.1364 26 7 3.2312 -3.8152 -0.9315 27 1 -0.4850 0.8400 0.0004 28 1 0.6243 -2.5566 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 1.5797 -4.7526 1.7349 31 1 3.5489 -6.3496 1.0585 32 1 5.3138 -5.0259 -2.0734 33 1 7.1248 -8.9599 -0.3484 34 1 10.9367 -8.8309 -4.6156 35 1 9.4073 -6.8401 -4.8183 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192123853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:42 Heat of formation + Delta-G solvation = 122.802760 kcal Electronic energy + Delta-G solvation = -21955.499706 eV Core-core repulsion = 18469.170114 eV Total energy + Delta-G solvation = -3486.329592 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67758 -40.63401 -39.05819 -35.60390 -34.97000 -33.42312 -31.34257 -31.02695 -29.42533 -28.69701 -26.70287 -24.27883 -23.30227 -22.62367 -21.11033 -20.81664 -19.94594 -19.72491 -18.62936 -16.91691 -16.65303 -16.43389 -15.76816 -15.65833 -15.42208 -14.71322 -14.66421 -14.38163 -14.20118 -13.86396 -13.81714 -13.20829 -12.82064 -12.42648 -12.32610 -12.17968 -11.97049 -11.80541 -11.14928 -11.10641 -10.94349 -10.56411 -10.30965 -10.23777 -10.04696 -9.83087 -9.57040 -8.68221 -8.44259 -8.23032 -7.99005 -7.56050 -6.28941 -4.34317 0.42846 1.22648 1.60792 1.76181 2.43723 2.45019 2.63089 2.67383 3.04941 3.20235 3.26243 3.31147 3.68032 3.77730 4.27762 4.42055 4.52049 4.65233 5.02590 5.06249 5.14958 5.41170 5.45240 5.60738 5.66402 5.68178 6.09874 6.13730 6.26886 6.40437 6.54165 6.78736 6.94665 6.99747 7.23839 7.45354 7.65332 7.82464 7.96529 8.00817 8.52600 8.74350 9.31548 10.79818 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.025118 B = 0.002374 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.448829 B =11789.352029 C =12649.468072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.316 5.316 11 C 0.054 3.946 12 C -0.285 4.285 13 C 0.255 3.745 14 N -0.627 5.627 15 C 0.593 3.407 16 O -0.497 6.497 17 C 0.014 3.986 18 C -0.066 4.066 19 C -0.220 4.220 20 S 0.132 5.868 21 C -0.188 4.188 22 C -0.115 4.115 23 C 0.068 3.932 24 N -0.542 5.542 25 H 0.421 0.579 26 N -0.302 5.302 27 H 0.268 0.732 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.170 0.830 31 H 0.162 0.838 32 H 0.405 0.595 33 H 0.160 0.840 34 H 0.173 0.827 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.524 -17.065 -6.919 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.098 5.098 11 C -0.096 4.096 12 C -0.316 4.316 13 C 0.002 3.998 14 N -0.274 5.274 15 C 0.379 3.621 16 O -0.370 6.370 17 C -0.100 4.100 18 C -0.097 4.097 19 C -0.340 4.340 20 S 0.392 5.608 21 C -0.324 4.324 22 C -0.148 4.148 23 C -0.051 4.051 24 N -0.145 5.145 25 H 0.259 0.741 26 N -0.133 5.133 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.187 0.813 31 H 0.179 0.821 32 H 0.240 0.760 33 H 0.177 0.823 34 H 0.190 0.810 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 17.369 -17.438 -6.462 25.447 hybrid contribution -0.121 2.387 -0.810 2.524 sum 17.248 -15.051 -7.272 24.018 Atomic orbital electron populations 1.69914 1.06035 1.27692 1.49616 1.24947 0.94995 0.99565 0.94557 0.86322 0.79673 0.82110 0.78362 1.20346 1.20922 1.19715 1.21239 0.93966 0.89360 1.52247 0.91329 1.19779 0.85576 0.81238 0.99392 1.49112 1.23076 1.19727 1.17897 1.22591 1.00272 0.90023 0.96753 1.21526 1.02125 1.06312 1.01648 1.18991 0.91340 0.94569 0.94896 1.42222 1.30308 1.24706 1.30136 1.16787 0.81485 0.79847 0.83998 1.90828 1.61538 1.60213 1.24416 1.20138 0.99328 0.98644 0.91922 1.20413 0.93613 0.96157 0.99485 1.22691 1.05564 1.02222 1.03556 1.83953 1.26166 1.26441 1.24259 1.25253 1.04874 0.99168 1.03139 1.18917 0.95299 1.00892 0.99724 1.18359 0.94295 0.93472 0.98945 1.42009 1.25559 1.23173 1.23739 0.74074 1.77327 1.03626 1.16141 1.16248 0.92270 0.93643 0.92381 0.81253 0.82114 0.76022 0.82266 0.80989 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 13.29 55.43 0.74 -24.28 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.52 9.24 -34.44 -0.32 -14.84 16 8 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 9 C 0.26 6.43 6.26 -5.20 -0.03 6.39 16 10 N -0.32 -7.20 3.67 -62.57 -0.23 -7.43 16 11 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 12 C -0.28 -5.50 9.60 -39.83 -0.38 -5.88 16 13 C 0.25 4.98 8.10 -154.46 -1.25 3.72 16 14 N -0.63 -9.43 5.44 -12.39 -0.07 -9.50 16 15 C 0.59 8.64 7.75 -12.96 -0.10 8.54 16 16 O -0.50 -8.57 13.98 5.14 0.07 -8.50 16 17 C 0.01 0.17 7.01 -82.11 -0.58 -0.40 16 18 C -0.07 -0.76 10.60 -38.94 -0.41 -1.18 16 19 C -0.22 -2.34 7.26 -38.67 -0.28 -2.62 16 20 S 0.13 1.07 23.31 -107.50 -2.51 -1.43 16 21 C -0.19 -1.25 11.13 28.86 0.32 -0.93 16 22 C -0.11 -0.87 10.16 -40.85 -0.42 -1.28 16 23 C 0.07 0.67 7.67 -83.99 -0.64 0.02 16 24 N -0.54 -5.12 6.14 -7.34 -0.05 -5.17 16 25 H 0.42 2.85 8.14 -40.82 -0.33 2.52 16 26 N -0.30 -6.78 12.42 31.43 0.39 -6.39 16 27 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 30 H 0.17 2.66 8.06 -52.49 -0.42 2.24 16 31 H 0.16 2.99 5.90 -52.49 -0.31 2.68 16 32 H 0.41 4.82 7.90 -40.82 -0.32 4.50 16 33 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16 35 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 327.30 15.07 4.93 4.93 Total: -1.00 -32.70 327.30 -9.17 -41.87 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -3.04 Total: 5.81 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -4.39 Total: -6.02 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.78 Total: -52.75 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.07 Total: -8.50 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.51 Total: -1.43 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.70 -9.17 -41.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192123853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.674 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds