Wall clock time and date at job start Tue Mar 31 2020 12:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86810 * 119.99680 * 2 1 4 4 H 1.48500 * 109.47065 * 270.00227 * 3 2 1 5 5 H 1.48507 * 109.46956 * 30.00259 * 3 2 1 6 6 H 1.48497 * 109.46810 * 150.00163 * 3 2 1 7 7 C 1.37871 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00116 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00323 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47383 * 179.97438 * 9 7 2 11 11 C 1.34977 * 125.97013 * 124.97616 * 10 9 7 12 12 C 1.35238 * 107.86346 * 179.76542 * 11 10 9 13 13 C 1.40424 * 107.86356 * 0.37387 * 12 11 10 14 14 N 1.40074 * 125.97355 * 179.88998 * 13 12 11 15 15 C 1.34777 * 119.99915 * 359.70885 * 14 13 12 16 16 O 1.21753 * 120.00056 * 0.02562 * 15 14 13 17 17 C 1.46426 * 120.00047 * 180.27555 * 15 14 13 18 18 C 1.37482 * 125.80574 * 179.41571 * 17 15 14 19 19 C 1.40657 * 107.55347 * 179.84605 * 18 17 15 20 20 S 1.76028 * 142.39688 * 180.02562 * 19 18 17 21 21 C 1.75587 * 91.31222 * 180.37882 * 20 19 18 22 22 C 1.32773 * 110.47523 * 0.02562 * 21 20 19 23 23 C 1.38247 * 108.03723 * 0.42407 * 19 18 17 24 24 N 1.37912 * 125.80476 * 359.72977 * 17 15 14 25 25 H 0.97005 * 125.68825 * 359.97438 * 24 17 15 26 26 N 1.31232 * 108.05416 * 359.62030 * 13 12 11 27 27 H 0.96997 * 120.00094 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46680 * 59.99866 * 9 7 2 29 29 H 1.08998 * 109.47262 * 300.00755 * 9 7 2 30 30 H 1.07995 * 126.06814 * 0.02562 * 11 10 9 31 31 H 1.08000 * 126.06764 * 180.26480 * 12 11 10 32 32 H 0.97000 * 120.00348 * 179.71641 * 14 13 12 33 33 H 1.08002 * 126.22677 * 0.02562 * 18 17 15 34 34 H 1.08003 * 124.76548 * 180.02562 * 21 20 19 35 35 H 1.08005 * 122.16579 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6528 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2513 -2.4991 -0.0005 10 7 2.2033 -3.6125 -0.0018 11 6 2.2433 -4.6225 0.8928 12 6 3.2582 -5.4455 0.5443 13 6 3.8686 -4.9145 -0.6035 14 7 4.9626 -5.4652 -1.2831 15 6 5.5274 -6.6054 -0.8389 16 8 5.0864 -7.1570 0.1529 17 6 6.6749 -7.1779 -1.5458 18 6 7.3473 -8.3238 -1.1924 19 6 8.3752 -8.5194 -2.1324 20 16 9.6967 -9.6054 -2.5481 21 6 10.1253 -8.6181 -3.9353 22 6 9.3119 -7.5730 -4.0307 23 6 8.3236 -7.4824 -3.0452 24 7 7.2687 -6.6559 -2.6758 25 1 6.9955 -5.8471 -3.1364 26 7 3.2312 -3.8152 -0.9315 27 1 -0.4850 0.8400 0.0004 28 1 0.6243 -2.5566 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 1.5797 -4.7526 1.7349 31 1 3.5489 -6.3496 1.0585 32 1 5.3138 -5.0259 -2.0734 33 1 7.1248 -8.9599 -0.3484 34 1 10.9367 -8.8309 -4.6156 35 1 9.4073 -6.8401 -4.8183 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192123853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:42 Heat of formation + Delta-G solvation = 102.128492 kcal Electronic energy + Delta-G solvation = -21956.396210 eV Core-core repulsion = 18469.170114 eV Total energy + Delta-G solvation = -3487.226096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.61848 -42.04757 -40.30647 -36.42012 -36.26305 -35.32508 -32.91331 -32.02432 -31.01930 -29.70435 -28.43172 -25.55609 -24.50326 -23.78632 -22.46682 -21.82529 -21.21298 -20.78631 -19.59015 -18.71204 -18.28046 -17.51328 -17.09904 -16.79593 -16.40788 -16.24003 -15.87004 -15.60601 -15.23753 -15.03972 -14.77905 -14.47511 -14.26447 -13.88356 -13.86706 -13.71422 -12.97157 -12.83347 -12.75949 -12.58773 -12.32101 -12.14435 -11.75633 -11.73839 -11.46457 -11.24648 -10.79674 -10.74032 -9.84174 -9.30731 -9.07337 -8.65988 -8.34891 -6.48916 -0.34886 0.56760 0.67337 1.12581 1.15067 1.22669 1.37251 1.37818 1.49429 1.74950 1.75996 1.78860 2.24346 2.32291 2.37482 2.97168 3.47646 3.79061 3.94579 3.97887 4.20336 4.35418 4.49605 4.64556 4.76278 4.82372 4.86640 4.91318 5.00383 5.06841 5.10693 5.39683 5.51617 5.54904 5.77446 5.80946 6.08909 6.23925 6.30489 6.62121 6.79208 6.97191 7.21097 8.72866 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.025118 B = 0.002374 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.448829 B =11789.352029 C =12649.468072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.342 5.342 11 C 0.059 3.941 12 C -0.292 4.292 13 C 0.264 3.736 14 N -0.620 5.620 15 C 0.599 3.401 16 O -0.527 6.527 17 C -0.005 4.005 18 C -0.068 4.068 19 C -0.254 4.254 20 S 0.137 5.863 21 C -0.166 4.166 22 C -0.132 4.132 23 C 0.076 3.924 24 N -0.534 5.534 25 H 0.432 0.568 26 N -0.342 5.342 27 H 0.273 0.727 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.204 0.796 31 H 0.170 0.830 32 H 0.419 0.581 33 H 0.160 0.840 34 H 0.208 0.792 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.754 -17.388 -7.979 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.153 3.847 10 N -0.124 5.124 11 C -0.089 4.089 12 C -0.323 4.323 13 C 0.009 3.991 14 N -0.269 5.269 15 C 0.387 3.613 16 O -0.402 6.402 17 C -0.119 4.119 18 C -0.099 4.099 19 C -0.374 4.374 20 S 0.397 5.603 21 C -0.302 4.302 22 C -0.165 4.165 23 C -0.045 4.045 24 N -0.138 5.138 25 H 0.273 0.727 26 N -0.172 5.172 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.221 0.779 31 H 0.187 0.813 32 H 0.256 0.744 33 H 0.177 0.823 34 H 0.225 0.775 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 19.605 -17.763 -7.542 27.509 hybrid contribution -0.647 2.293 -0.545 2.444 sum 18.958 -15.470 -8.086 25.770 Atomic orbital electron populations 1.69990 1.07189 1.28798 1.49870 1.25735 0.95847 1.02712 0.93897 0.85352 0.78366 0.78171 0.78551 1.19777 1.19707 1.19759 1.21386 0.93361 0.90950 1.52897 0.92953 1.19373 0.85635 0.81419 0.98275 1.48872 1.23745 1.20349 1.19390 1.23205 1.00399 0.88614 0.96697 1.21735 1.02190 1.06582 1.01779 1.19306 0.91490 0.93526 0.94747 1.42259 1.29245 1.24919 1.30441 1.17096 0.81555 0.79053 0.83549 1.90793 1.62630 1.60942 1.25851 1.19616 0.99437 0.99459 0.93429 1.20565 0.93773 0.95901 0.99632 1.22955 1.06631 1.03805 1.03976 1.83975 1.25046 1.26252 1.25073 1.25760 1.04669 0.97639 1.02114 1.19215 0.94947 1.02155 1.00143 1.18842 0.93979 0.92711 0.98928 1.41919 1.25328 1.23524 1.23047 0.72745 1.77247 1.04700 1.17900 1.17400 0.91810 0.95932 0.92164 0.77898 0.81277 0.74352 0.82251 0.77522 0.81426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.69 13.29 21.45 0.28 -51.41 16 2 C 0.02 1.02 5.46 84.65 0.46 1.48 16 3 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.55 -30.60 9.24 25.60 0.24 -30.36 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 9 C 0.27 13.92 6.26 85.63 0.54 14.46 16 10 N -0.34 -15.84 3.67 -351.86 -1.29 -17.13 16 11 C 0.06 2.30 11.44 83.52 0.96 3.26 16 12 C -0.29 -11.26 9.60 22.11 0.21 -11.05 16 13 C 0.26 10.38 8.10 133.35 1.08 11.46 16 14 N -0.62 -18.64 5.44 -311.29 -1.69 -20.33 16 15 C 0.60 17.48 7.75 86.37 0.67 18.15 16 16 O -0.53 -18.35 13.98 -4.52 -0.06 -18.41 16 17 C -0.01 -0.12 7.01 40.14 0.28 0.16 16 18 C -0.07 -1.55 10.60 22.68 0.24 -1.31 16 19 C -0.25 -5.10 7.26 22.86 0.17 -4.94 16 20 S 0.14 1.94 23.31 -56.49 -1.32 0.63 16 21 C -0.17 -1.59 11.13 66.64 0.74 -0.85 16 22 C -0.13 -1.56 10.16 21.49 0.22 -1.34 16 23 C 0.08 1.34 7.67 38.40 0.29 1.64 16 24 N -0.53 -9.47 6.14 -177.14 -1.09 -10.55 16 25 H 0.43 5.29 8.14 -92.70 -0.75 4.53 16 26 N -0.34 -15.62 12.42 -54.49 -0.68 -16.30 16 27 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 3.01 8.07 -2.39 -0.02 2.99 16 30 H 0.20 6.15 8.06 -2.91 -0.02 6.13 16 31 H 0.17 6.26 5.90 -2.91 -0.02 6.24 16 32 H 0.42 9.88 7.90 -92.71 -0.73 9.14 16 33 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.21 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -70.95 327.30 1.97 -68.99 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.31 Total: 18.53 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 6.09 Total: 0.76 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.46 Total: -115.72 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.06 Total: -18.41 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.32 Total: 0.63 kcal Total: -70.95 1.97 -68.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192123853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.115 kcal (2) G-P(sol) polarization free energy of solvation -70.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds