Wall clock time and date at job start Tue Mar 31 2020 10:42:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30635 * 1
3 3 Si 1.86799 * 119.99762 * 2 1
4 4 H 1.48498 * 109.47071 * 180.02562 * 3 2 1
5 5 H 1.48507 * 109.47185 * 300.00309 * 3 2 1
6 6 H 1.48496 * 109.47302 * 60.00238 * 3 2 1
7 7 C 1.40135 * 119.99904 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99825 * 179.97438 * 7 2 1
9 9 C 1.41750 * 120.00251 * 359.72203 * 7 2 1
10 10 O 1.21781 * 119.99848 * 0.02562 * 9 7 2
11 11 N 1.34774 * 120.00068 * 179.97438 * 9 7 2
12 12 C 1.39456 * 120.00118 * 175.51252 * 11 9 7
13 13 C 1.38942 * 120.12049 * 34.72160 * 12 11 9
14 14 C 1.38074 * 119.98398 * 179.76638 * 13 12 11
15 15 C 1.38463 * 120.24043 * 0.53160 * 14 13 12
16 16 C 1.38165 * 120.24837 * 359.70248 * 15 14 13
17 17 C 1.38753 * 120.01441 * 0.04211 * 16 15 14
18 18 N 1.39776 * 120.12227 * 180.02562 * 17 16 15
19 19 C 1.34770 * 120.00228 * 34.69493 * 18 17 16
20 20 O 1.21725 * 119.99919 * 355.50173 * 19 18 17
21 21 C 1.46547 * 120.00056 * 175.51146 * 19 18 17
22 22 C 1.36678 * 125.45771 * 180.02562 * 21 19 18
23 23 C 1.37472 * 113.29241 * 179.97438 * 22 21 19
24 24 C 1.33826 * 115.09926 * 359.97438 * 23 22 21
25 25 S 1.70614 * 110.96108 * 359.75135 * 24 23 22
26 26 H 0.96998 * 120.00165 * 359.97438 * 1 2 3
27 27 H 0.97009 * 120.00126 * 355.52428 * 11 9 7
28 28 H 1.07999 * 120.00751 * 0.02562 * 13 12 11
29 29 H 1.07996 * 119.87801 * 180.25509 * 14 13 12
30 30 H 1.07993 * 119.87323 * 179.71992 * 15 14 13
31 31 H 1.07999 * 119.99562 * 180.02562 * 16 15 14
32 32 H 0.97001 * 119.99779 * 214.69857 * 18 17 16
33 33 H 1.07997 * 123.35484 * 359.94462 * 22 21 19
34 34 H 1.07994 * 122.44845 * 180.02562 * 23 22 21
35 35 H 1.07999 * 124.51829 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3064 0.0000 0.0000
3 14 2.2403 1.6178 0.0000
4 1 3.7003 1.3465 -0.0006
5 1 1.8814 2.3965 -1.2125
6 1 1.8816 2.3964 1.2125
7 6 2.0070 -1.2136 -0.0005
8 1 3.0870 -1.2136 -0.0010
9 6 1.2983 -2.4412 0.0049
10 8 0.0805 -2.4412 0.0095
11 7 1.9722 -3.6084 0.0038
12 6 1.2786 -4.8141 0.1036
13 6 0.0283 -4.9502 -0.4870
14 6 -0.6538 -6.1468 -0.3905
15 6 -0.1014 -7.2105 0.3028
16 6 1.1391 -7.0844 0.8979
17 6 1.8361 -5.8883 0.8031
18 7 3.0914 -5.7584 1.4038
19 6 3.9289 -6.8133 1.4499
20 8 3.5618 -7.9000 1.0425
21 6 5.2813 -6.6521 1.9907
22 6 6.2189 -7.6418 2.0895
23 6 7.4057 -7.2136 2.6353
24 6 7.4414 -5.9189 2.9719
25 16 5.9610 -5.1527 2.6083
26 1 -0.4850 0.8400 0.0004
27 1 2.9398 -3.6098 -0.0662
28 1 -0.4080 -4.1216 -1.0249
29 1 -1.6237 -6.2520 -0.8537
30 1 -0.6421 -8.1423 0.3783
31 1 1.5663 -7.9168 1.4373
32 1 3.3598 -4.9090 1.7877
33 1 6.0445 -8.6589 1.7711
34 1 8.2480 -7.8737 2.7810
35 1 8.2951 -5.4239 3.4108
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000219624110.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:42:29
Heat of formation + Delta-G solvation = -3.373057 kcal
Electronic energy + Delta-G solvation = -22837.403562 eV
Core-core repulsion = 19313.309825 eV
Total energy + Delta-G solvation = -3524.093737 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 316.067 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-40.43750 -38.86056 -37.66910 -36.84365 -34.59888 -33.44425 -32.40765 -30.55849
-29.30513 -28.51002 -26.42758 -25.19297 -22.91521 -22.21450 -20.76661 -19.98163
-19.50262 -18.65163 -17.73892 -16.96120 -16.23233 -15.96086 -15.66220 -15.51136
-15.03411 -14.36459 -14.19658 -13.85292 -13.72284 -13.25119 -13.02806 -12.88722
-12.82493 -12.57087 -12.50460 -11.93500 -11.46166 -11.28096 -11.19234 -11.13169
-11.06837 -10.69756 -10.37167 -10.13839 -9.76141 -9.32141 -9.12575 -8.89929
-8.82622 -7.98128 -7.64523 -7.02552 -6.42953 -4.96901 0.28873 1.25623
1.66697 1.81855 2.10924 2.26246 2.99712 3.07607 3.09012 3.12826
3.18711 3.92514 4.24950 4.50322 4.56432 4.68397 4.78538 5.06709
5.24021 5.51260 5.57922 5.69795 5.70941 5.83148 5.92754 5.99246
6.08071 6.17482 6.46178 6.73285 6.86232 7.06365 7.17594 7.18806
7.46439 7.50892 7.77354 7.95749 8.05847 8.20585 8.74449 9.20183
10.32014 10.52033
Molecular weight = 316.07amu
Principal moments of inertia in cm(-1)
A = 0.011043 B = 0.004606 C = 0.003293
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2534.838979 B = 6077.723124 C = 8499.638316
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.746 5.746
2 C 0.089 3.911
3 Si 0.912 3.088
4 H -0.262 1.262
5 H -0.274 1.274
6 H -0.274 1.274
7 C -0.538 4.538
8 H 0.070 0.930
9 C 0.544 3.456
10 O -0.563 6.563
11 N -0.702 5.702
12 C 0.175 3.825
13 C -0.115 4.115
14 C -0.111 4.111
15 C -0.151 4.151
16 C -0.099 4.099
17 C 0.076 3.924
18 N -0.656 5.656
19 C 0.588 3.412
20 O -0.516 6.516
21 C -0.267 4.267
22 C -0.056 4.056
23 C -0.152 4.152
24 C -0.232 4.232
25 S 0.214 5.786
26 H 0.273 0.727
27 H 0.388 0.612
28 H 0.148 0.852
29 H 0.117 0.883
30 H 0.115 0.885
31 H 0.132 0.868
32 H 0.405 0.595
33 H 0.154 0.846
34 H 0.145 0.855
35 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.461 -9.797 5.133 16.661
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.373 5.373
2 C -0.134 4.134
3 Si 0.736 3.264
4 H -0.186 1.186
5 H -0.199 1.199
6 H -0.199 1.199
7 C -0.574 4.574
8 H 0.088 0.912
9 C 0.353 3.647
10 O -0.446 6.446
11 N -0.346 5.346
12 C 0.075 3.925
13 C -0.136 4.136
14 C -0.131 4.131
15 C -0.171 4.171
16 C -0.119 4.119
17 C -0.020 4.020
18 N -0.301 5.301
19 C 0.375 3.625
20 O -0.393 6.393
21 C -0.387 4.387
22 C -0.089 4.089
23 C -0.183 4.183
24 C -0.370 4.370
25 S 0.481 5.519
26 H 0.084 0.916
27 H 0.220 0.780
28 H 0.166 0.834
29 H 0.135 0.865
30 H 0.133 0.867
31 H 0.150 0.850
32 H 0.242 0.758
33 H 0.172 0.828
34 H 0.163 0.837
35 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges 10.681 -8.821 5.025 14.736
hybrid contribution 1.875 -0.170 0.136 1.888
sum 12.556 -8.991 5.161 16.283
Atomic orbital electron populations
1.70012 1.07269 1.27851 1.32174 1.25749 0.94641 1.00661 0.92396
0.86244 0.80525 0.81167 0.78492 1.18556 1.19897 1.19911 1.20055
0.94340 0.89935 1.53042 0.91161 1.17080 0.87655 0.81923 0.78041
1.90643 1.13499 1.85776 1.54710 1.44124 1.09357 1.04310 1.76823
1.17825 0.94460 0.86265 0.93999 1.21367 0.94388 0.97849 1.00045
1.21052 0.99547 0.92912 0.99551 1.20808 0.95809 0.98870 1.01618
1.20891 0.93936 0.96479 1.00630 1.17539 0.86774 0.96891 1.00793
1.43063 1.15108 1.14152 1.57730 1.16985 0.82817 0.84381 0.78324
1.90812 1.75948 1.25282 1.47274 1.24642 0.99684 0.99165 1.15225
1.20799 0.91165 1.00203 0.96765 1.20041 0.99274 0.95623 1.03369
1.25383 1.03908 0.99510 1.08181 1.83358 1.04269 1.09405 1.54826
0.91634 0.77962 0.83428 0.86530 0.86680 0.85032 0.75848 0.82846
0.83722 0.81328
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.75 -20.87 11.73 55.55 0.65 -20.22 16
2 C 0.09 2.30 5.50 -17.35 -0.10 2.20 16
3 Si 0.91 18.69 29.56 -169.99 -5.02 13.66 16
4 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16
5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
6 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16
7 C -0.54 -14.08 9.31 -37.53 -0.35 -14.42 16
8 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16
9 C 0.54 14.53 7.41 -14.92 -0.11 14.42 16
10 O -0.56 -16.96 12.28 5.12 0.06 -16.90 16
11 N -0.70 -15.39 4.96 -12.29 -0.06 -15.45 16
12 C 0.18 3.71 6.32 -83.55 -0.53 3.19 16
13 C -0.12 -2.47 8.69 -39.38 -0.34 -2.81 16
14 C -0.11 -2.01 10.04 -39.56 -0.40 -2.41 16
15 C -0.15 -2.55 10.04 -39.53 -0.40 -2.95 16
16 C -0.10 -1.79 8.69 -39.42 -0.34 -2.13 16
17 C 0.08 1.44 6.33 -83.47 -0.53 0.91 16
18 N -0.66 -10.60 4.98 -10.91 -0.05 -10.66 16
19 C 0.59 9.21 7.62 -12.91 -0.10 9.11 16
20 O -0.52 -9.32 14.25 5.17 0.07 -9.24 16
21 C -0.27 -3.35 6.45 -36.80 -0.24 -3.59 16
22 C -0.06 -0.61 10.01 -40.42 -0.40 -1.01 16
23 C -0.15 -1.31 10.15 -41.41 -0.42 -1.73 16
24 C -0.23 -1.93 10.92 29.18 0.32 -1.61 16
25 S 0.21 2.15 22.16 -107.50 -2.38 -0.24 16
26 H 0.27 6.88 8.29 -40.82 -0.34 6.54 16
27 H 0.39 7.38 8.30 -40.82 -0.34 7.04 16
28 H 0.15 3.57 6.19 -52.49 -0.32 3.24 16
29 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16
30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16
31 H 0.13 2.32 6.19 -52.49 -0.33 2.00 16
32 H 0.41 5.99 7.46 -40.82 -0.30 5.68 16
33 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16
34 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16
35 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16
LS Contribution 323.31 15.07 4.87 4.87
Total: -1.00 -32.80 323.31 -8.75 -41.55
By element:
Atomic # 1 Polarization: 18.42 SS G_CDS: -2.95 Total: 15.46 kcal
Atomic # 6 Polarization: 1.08 SS G_CDS: -3.93 Total: -2.85 kcal
Atomic # 7 Polarization: -46.86 SS G_CDS: 0.54 Total: -46.32 kcal
Atomic # 8 Polarization: -26.28 SS G_CDS: 0.14 Total: -26.14 kcal
Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal
Atomic # 16 Polarization: 2.15 SS G_CDS: -2.38 Total: -0.24 kcal
Total LS contribution 4.87 Total: 4.87 kcal
Total: -32.80 -8.75 -41.55 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219624110.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.178 kcal
(2) G-P(sol) polarization free energy of solvation -32.803 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.375 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.373 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds