Wall clock time and date at job start Tue Mar 31 2020 10:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86799 * 119.99762 * 2 1 4 4 H 1.48498 * 109.47071 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47185 * 300.00309 * 3 2 1 6 6 H 1.48496 * 109.47302 * 60.00238 * 3 2 1 7 7 C 1.40135 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99825 * 179.97438 * 7 2 1 9 9 C 1.41750 * 120.00251 * 359.72203 * 7 2 1 10 10 O 1.21781 * 119.99848 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00068 * 179.97438 * 9 7 2 12 12 C 1.39456 * 120.00118 * 175.51252 * 11 9 7 13 13 C 1.38942 * 120.12049 * 34.72160 * 12 11 9 14 14 C 1.38074 * 119.98398 * 179.76638 * 13 12 11 15 15 C 1.38463 * 120.24043 * 0.53160 * 14 13 12 16 16 C 1.38165 * 120.24837 * 359.70248 * 15 14 13 17 17 C 1.38753 * 120.01441 * 0.04211 * 16 15 14 18 18 N 1.39776 * 120.12227 * 180.02562 * 17 16 15 19 19 C 1.34770 * 120.00228 * 34.69493 * 18 17 16 20 20 O 1.21725 * 119.99919 * 355.50173 * 19 18 17 21 21 C 1.46547 * 120.00056 * 175.51146 * 19 18 17 22 22 C 1.36678 * 125.45771 * 180.02562 * 21 19 18 23 23 C 1.37472 * 113.29241 * 179.97438 * 22 21 19 24 24 C 1.33826 * 115.09926 * 359.97438 * 23 22 21 25 25 S 1.70614 * 110.96108 * 359.75135 * 24 23 22 26 26 H 0.96998 * 120.00165 * 359.97438 * 1 2 3 27 27 H 0.97009 * 120.00126 * 355.52428 * 11 9 7 28 28 H 1.07999 * 120.00751 * 0.02562 * 13 12 11 29 29 H 1.07996 * 119.87801 * 180.25509 * 14 13 12 30 30 H 1.07993 * 119.87323 * 179.71992 * 15 14 13 31 31 H 1.07999 * 119.99562 * 180.02562 * 16 15 14 32 32 H 0.97001 * 119.99779 * 214.69857 * 18 17 16 33 33 H 1.07997 * 123.35484 * 359.94462 * 22 21 19 34 34 H 1.07994 * 122.44845 * 180.02562 * 23 22 21 35 35 H 1.07999 * 124.51829 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 -0.0006 5 1 1.8814 2.3965 -1.2125 6 1 1.8816 2.3964 1.2125 7 6 2.0070 -1.2136 -0.0005 8 1 3.0870 -1.2136 -0.0010 9 6 1.2983 -2.4412 0.0049 10 8 0.0805 -2.4412 0.0095 11 7 1.9722 -3.6084 0.0038 12 6 1.2786 -4.8141 0.1036 13 6 0.0283 -4.9502 -0.4870 14 6 -0.6538 -6.1468 -0.3905 15 6 -0.1014 -7.2105 0.3028 16 6 1.1391 -7.0844 0.8979 17 6 1.8361 -5.8883 0.8031 18 7 3.0914 -5.7584 1.4038 19 6 3.9289 -6.8133 1.4499 20 8 3.5618 -7.9000 1.0425 21 6 5.2813 -6.6521 1.9907 22 6 6.2189 -7.6418 2.0895 23 6 7.4057 -7.2136 2.6353 24 6 7.4414 -5.9189 2.9719 25 16 5.9610 -5.1527 2.6083 26 1 -0.4850 0.8400 0.0004 27 1 2.9398 -3.6098 -0.0662 28 1 -0.4080 -4.1216 -1.0249 29 1 -1.6237 -6.2520 -0.8537 30 1 -0.6421 -8.1423 0.3783 31 1 1.5663 -7.9168 1.4373 32 1 3.3598 -4.9090 1.7877 33 1 6.0445 -8.6589 1.7711 34 1 8.2480 -7.8737 2.7810 35 1 8.2951 -5.4239 3.4108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219624110.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:29 Heat of formation + Delta-G solvation = -3.373057 kcal Electronic energy + Delta-G solvation = -22837.403562 eV Core-core repulsion = 19313.309825 eV Total energy + Delta-G solvation = -3524.093737 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43750 -38.86056 -37.66910 -36.84365 -34.59888 -33.44425 -32.40765 -30.55849 -29.30513 -28.51002 -26.42758 -25.19297 -22.91521 -22.21450 -20.76661 -19.98163 -19.50262 -18.65163 -17.73892 -16.96120 -16.23233 -15.96086 -15.66220 -15.51136 -15.03411 -14.36459 -14.19658 -13.85292 -13.72284 -13.25119 -13.02806 -12.88722 -12.82493 -12.57087 -12.50460 -11.93500 -11.46166 -11.28096 -11.19234 -11.13169 -11.06837 -10.69756 -10.37167 -10.13839 -9.76141 -9.32141 -9.12575 -8.89929 -8.82622 -7.98128 -7.64523 -7.02552 -6.42953 -4.96901 0.28873 1.25623 1.66697 1.81855 2.10924 2.26246 2.99712 3.07607 3.09012 3.12826 3.18711 3.92514 4.24950 4.50322 4.56432 4.68397 4.78538 5.06709 5.24021 5.51260 5.57922 5.69795 5.70941 5.83148 5.92754 5.99246 6.08071 6.17482 6.46178 6.73285 6.86232 7.06365 7.17594 7.18806 7.46439 7.50892 7.77354 7.95749 8.05847 8.20585 8.74449 9.20183 10.32014 10.52033 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.004606 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.838979 B = 6077.723124 C = 8499.638316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.089 3.911 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.544 3.456 10 O -0.563 6.563 11 N -0.702 5.702 12 C 0.175 3.825 13 C -0.115 4.115 14 C -0.111 4.111 15 C -0.151 4.151 16 C -0.099 4.099 17 C 0.076 3.924 18 N -0.656 5.656 19 C 0.588 3.412 20 O -0.516 6.516 21 C -0.267 4.267 22 C -0.056 4.056 23 C -0.152 4.152 24 C -0.232 4.232 25 S 0.214 5.786 26 H 0.273 0.727 27 H 0.388 0.612 28 H 0.148 0.852 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.405 0.595 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.461 -9.797 5.133 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.353 3.647 10 O -0.446 6.446 11 N -0.346 5.346 12 C 0.075 3.925 13 C -0.136 4.136 14 C -0.131 4.131 15 C -0.171 4.171 16 C -0.119 4.119 17 C -0.020 4.020 18 N -0.301 5.301 19 C 0.375 3.625 20 O -0.393 6.393 21 C -0.387 4.387 22 C -0.089 4.089 23 C -0.183 4.183 24 C -0.370 4.370 25 S 0.481 5.519 26 H 0.084 0.916 27 H 0.220 0.780 28 H 0.166 0.834 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.150 0.850 32 H 0.242 0.758 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 10.681 -8.821 5.025 14.736 hybrid contribution 1.875 -0.170 0.136 1.888 sum 12.556 -8.991 5.161 16.283 Atomic orbital electron populations 1.70012 1.07269 1.27851 1.32174 1.25749 0.94641 1.00661 0.92396 0.86244 0.80525 0.81167 0.78492 1.18556 1.19897 1.19911 1.20055 0.94340 0.89935 1.53042 0.91161 1.17080 0.87655 0.81923 0.78041 1.90643 1.13499 1.85776 1.54710 1.44124 1.09357 1.04310 1.76823 1.17825 0.94460 0.86265 0.93999 1.21367 0.94388 0.97849 1.00045 1.21052 0.99547 0.92912 0.99551 1.20808 0.95809 0.98870 1.01618 1.20891 0.93936 0.96479 1.00630 1.17539 0.86774 0.96891 1.00793 1.43063 1.15108 1.14152 1.57730 1.16985 0.82817 0.84381 0.78324 1.90812 1.75948 1.25282 1.47274 1.24642 0.99684 0.99165 1.15225 1.20799 0.91165 1.00203 0.96765 1.20041 0.99274 0.95623 1.03369 1.25383 1.03908 0.99510 1.08181 1.83358 1.04269 1.09405 1.54826 0.91634 0.77962 0.83428 0.86530 0.86680 0.85032 0.75848 0.82846 0.83722 0.81328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.87 11.73 55.55 0.65 -20.22 16 2 C 0.09 2.30 5.50 -17.35 -0.10 2.20 16 3 Si 0.91 18.69 29.56 -169.99 -5.02 13.66 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 7 C -0.54 -14.08 9.31 -37.53 -0.35 -14.42 16 8 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 9 C 0.54 14.53 7.41 -14.92 -0.11 14.42 16 10 O -0.56 -16.96 12.28 5.12 0.06 -16.90 16 11 N -0.70 -15.39 4.96 -12.29 -0.06 -15.45 16 12 C 0.18 3.71 6.32 -83.55 -0.53 3.19 16 13 C -0.12 -2.47 8.69 -39.38 -0.34 -2.81 16 14 C -0.11 -2.01 10.04 -39.56 -0.40 -2.41 16 15 C -0.15 -2.55 10.04 -39.53 -0.40 -2.95 16 16 C -0.10 -1.79 8.69 -39.42 -0.34 -2.13 16 17 C 0.08 1.44 6.33 -83.47 -0.53 0.91 16 18 N -0.66 -10.60 4.98 -10.91 -0.05 -10.66 16 19 C 0.59 9.21 7.62 -12.91 -0.10 9.11 16 20 O -0.52 -9.32 14.25 5.17 0.07 -9.24 16 21 C -0.27 -3.35 6.45 -36.80 -0.24 -3.59 16 22 C -0.06 -0.61 10.01 -40.42 -0.40 -1.01 16 23 C -0.15 -1.31 10.15 -41.41 -0.42 -1.73 16 24 C -0.23 -1.93 10.92 29.18 0.32 -1.61 16 25 S 0.21 2.15 22.16 -107.50 -2.38 -0.24 16 26 H 0.27 6.88 8.29 -40.82 -0.34 6.54 16 27 H 0.39 7.38 8.30 -40.82 -0.34 7.04 16 28 H 0.15 3.57 6.19 -52.49 -0.32 3.24 16 29 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.13 2.32 6.19 -52.49 -0.33 2.00 16 32 H 0.41 5.99 7.46 -40.82 -0.30 5.68 16 33 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -32.80 323.31 -8.75 -41.55 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -2.95 Total: 15.46 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.93 Total: -2.85 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.54 Total: -46.32 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: 0.14 Total: -26.14 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.38 Total: -0.24 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.80 -8.75 -41.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219624110.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.178 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds