Wall clock time and date at job start Tue Mar 31 2020 11:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09001 * 109.47377 * 330.00266 * 3 2 1 5 5 C 1.53005 * 109.47197 * 90.00111 * 3 2 1 6 6 C 1.50706 * 109.47222 * 209.99898 * 3 2 1 7 7 N 1.29028 * 124.91278 * 134.71657 * 6 3 2 8 8 C 1.31790 * 117.11971 * 179.81633 * 7 6 3 9 9 C 1.50693 * 122.74847 * 180.22930 * 8 7 6 10 10 N 1.46506 * 109.46961 * 275.24145 * 9 8 7 11 11 C 1.34779 * 119.99861 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00053 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99848 * 180.02562 * 11 10 9 14 14 S 1.81004 * 109.46756 * 179.97438 * 13 11 10 15 15 C 1.76205 * 99.99646 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99803 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99991 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99576 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47648 * 60.00133 * 19 17 15 21 21 H 1.48499 * 109.46828 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47160 * 299.99665 * 19 17 15 23 23 C 1.33643 * 114.49808 * 0.47956 * 8 7 6 24 24 S 1.70978 * 124.91427 * 315.03041 * 6 3 2 25 25 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46830 * 59.99820 * 5 3 2 29 29 H 1.09006 * 109.46899 * 179.97438 * 5 3 2 30 30 H 1.08994 * 109.46766 * 299.99641 * 5 3 2 31 31 H 1.08998 * 109.47587 * 35.24536 * 9 8 7 32 32 H 1.08997 * 109.47304 * 155.24544 * 9 8 7 33 33 H 0.96998 * 119.99857 * 0.02562 * 10 9 8 34 34 H 1.08995 * 109.47003 * 300.00031 * 13 11 10 35 35 H 1.09001 * 109.47248 * 60.00418 * 13 11 10 36 36 H 0.96999 * 119.99359 * 180.02562 * 18 17 15 37 37 H 1.08002 * 126.03489 * 179.79005 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7104 7 7 3.7353 2.1252 -1.5856 8 6 4.9307 1.9425 -2.1093 9 6 5.5211 2.8726 -3.1374 10 7 5.0523 2.4874 -4.4709 11 6 5.4533 3.1833 -5.5533 12 8 6.2026 4.1280 -5.4234 13 6 4.9705 2.7874 -6.9249 14 16 5.6786 3.9055 -8.1597 15 6 4.9693 3.2316 -9.6251 16 1 4.3137 2.3755 -9.5634 17 6 5.2532 3.8009 -10.8588 18 7 6.0526 4.8439 -10.9340 19 14 4.5007 3.0868 -12.4122 20 1 3.0199 3.1510 -12.3197 21 1 4.9570 3.8701 -13.5884 22 1 4.9264 1.6722 -12.5634 23 6 5.5743 0.8617 -1.6578 24 16 4.5351 0.0648 -0.4789 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.8829 1.0775 1.9563 29 1 2.6613 2.7671 1.4425 30 1 1.2568 1.8015 1.9563 31 1 5.2095 3.8951 -2.9240 32 1 6.6087 2.8096 -3.1025 33 1 4.4526 1.7321 -4.5747 34 1 5.2822 1.7651 -7.1387 35 1 3.8829 2.8504 -6.9595 36 1 6.2507 5.2419 -11.7961 37 1 6.5579 0.5350 -1.9613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267660458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:02 Heat of formation + Delta-G solvation = -37.493878 kcal Electronic energy + Delta-G solvation = -20469.848817 eV Core-core repulsion = 17079.719441 eV Total energy + Delta-G solvation = -3390.129376 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.46981 -39.04011 -38.52381 -34.65452 -32.80049 -32.40899 -30.56762 -29.20437 -27.36268 -26.62405 -25.48064 -25.05525 -22.09405 -20.39582 -20.16049 -18.47744 -17.71821 -16.82992 -16.57382 -16.31872 -16.00799 -15.78777 -15.05562 -14.78775 -14.67437 -14.45141 -13.89590 -13.54033 -13.39837 -13.32203 -13.11149 -12.92052 -12.78040 -12.53060 -12.17614 -11.84419 -11.60002 -11.47858 -11.02675 -11.02284 -10.75757 -10.36465 -9.97634 -9.81272 -9.72874 -9.57321 -9.06212 -9.04576 -8.89170 -8.21984 -6.47822 -6.19653 -3.90078 0.30497 1.01037 1.42525 2.22765 2.93252 3.11365 3.13413 3.25012 3.29364 3.36383 3.81036 3.93562 4.22389 4.35053 4.55504 4.61833 4.81451 4.84464 4.92501 4.97682 5.13793 5.15326 5.15916 5.23643 5.23917 5.45731 5.60401 5.62168 5.70473 5.83904 5.92185 6.16980 6.52814 6.56805 7.38284 7.61226 7.70942 8.37051 8.61290 9.25467 10.87739 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.021822 B = 0.002300 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.792847 B =12171.973040 C =12857.840045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.162 3.838 4 H 0.094 0.906 5 C -0.169 4.169 6 C 0.040 3.960 7 N -0.452 5.452 8 C 0.053 3.947 9 C 0.199 3.801 10 N -0.733 5.733 11 C 0.534 3.466 12 O -0.517 6.517 13 C -0.152 4.152 14 S -0.059 6.059 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.242 4.242 24 S 0.167 5.833 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.469 -11.887 26.674 30.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.101 3.899 4 H 0.112 0.888 5 C -0.227 4.227 6 C -0.239 4.239 7 N -0.168 5.168 8 C -0.080 4.080 9 C 0.073 3.927 10 N -0.388 5.388 11 C 0.320 3.680 12 O -0.391 6.391 13 C -0.303 4.303 14 S 0.168 5.832 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.383 4.383 24 S 0.422 5.578 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.293 -10.800 27.281 30.234 hybrid contribution -1.478 -1.175 -1.819 2.622 sum -8.771 -11.976 25.461 29.472 Atomic orbital electron populations 1.22866 0.79726 1.03354 1.00522 1.87907 1.20693 1.26325 1.95117 1.20308 0.88521 0.86116 0.94993 0.88849 1.22292 1.03334 1.02481 0.94606 1.26674 1.01348 0.96027 0.99805 1.66033 1.14602 1.27692 1.08465 1.20233 0.90283 0.96837 1.00672 1.19643 0.98051 0.96338 0.78702 1.45979 1.52077 1.35365 1.05382 1.20307 0.80151 0.82055 0.85452 1.90706 1.34762 1.27488 1.86141 1.23526 1.04780 1.06088 0.95903 1.85383 1.62945 1.38761 0.96150 1.22833 1.34303 1.18742 0.92528 0.90985 1.24992 0.95018 0.94818 0.98764 1.70010 1.33716 1.20730 1.25847 0.86221 0.79376 0.78990 0.80894 1.19956 1.20814 1.19948 1.27160 1.06474 1.00274 1.04373 1.84050 1.08026 1.27804 1.37876 0.93407 0.93555 0.89038 0.91306 0.90655 0.90987 0.89775 0.89718 0.76744 0.89193 0.89181 0.92139 0.79967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.12 10.18 -35.23 -0.36 -3.48 16 3 C 0.16 1.30 3.24 -27.88 -0.09 1.21 16 4 H 0.09 0.73 7.79 -51.93 -0.40 0.32 16 5 C -0.17 -1.01 9.51 37.16 0.35 -0.66 16 6 C 0.04 0.40 6.34 -13.45 -0.09 0.31 16 7 N -0.45 -5.43 10.53 -8.05 -0.08 -5.52 16 8 C 0.05 0.60 6.11 -84.22 -0.51 0.08 16 9 C 0.20 2.58 6.11 -5.19 -0.03 2.55 16 10 N -0.73 -10.65 5.55 -61.47 -0.34 -10.99 16 11 C 0.53 10.27 7.85 -10.98 -0.09 10.18 16 12 O -0.52 -11.89 15.86 5.56 0.09 -11.80 16 13 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 14 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 15 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 16 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 19 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 C -0.24 -2.25 11.11 29.12 0.32 -1.92 16 24 S 0.17 1.43 23.01 -107.50 -2.47 -1.05 16 25 H 0.05 0.24 8.09 -51.93 -0.42 -0.18 16 26 H 0.05 0.18 7.87 -51.93 -0.41 -0.23 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.40 4.99 8.46 -40.82 -0.35 4.65 16 34 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 35 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 36 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 353.24 15.07 5.32 5.32 Total: -1.00 -35.33 353.24 -7.88 -43.21 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.91 Total: 0.25 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 1.38 Total: -3.05 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.31 Total: -42.14 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.27 Total: -15.28 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -4.69 Total: -4.88 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.33 -7.88 -43.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267660458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.717 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds