Wall clock time and date at job start Tue Mar 31 2020 11:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09001 * 109.47377 * 330.00266 * 3 2 1 5 5 C 1.53005 * 109.47197 * 90.00111 * 3 2 1 6 6 C 1.50706 * 109.47222 * 209.99898 * 3 2 1 7 7 N 1.29028 * 124.91278 * 134.71657 * 6 3 2 8 8 C 1.31790 * 117.11971 * 179.81633 * 7 6 3 9 9 C 1.50693 * 122.74847 * 180.22930 * 8 7 6 10 10 N 1.46506 * 109.46961 * 275.24145 * 9 8 7 11 11 C 1.34779 * 119.99861 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00053 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99848 * 180.02562 * 11 10 9 14 14 S 1.81004 * 109.46756 * 179.97438 * 13 11 10 15 15 C 1.76205 * 99.99646 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99803 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99991 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99576 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47648 * 60.00133 * 19 17 15 21 21 H 1.48499 * 109.46828 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47160 * 299.99665 * 19 17 15 23 23 C 1.33643 * 114.49808 * 0.47956 * 8 7 6 24 24 S 1.70978 * 124.91427 * 315.03041 * 6 3 2 25 25 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46830 * 59.99820 * 5 3 2 29 29 H 1.09006 * 109.46899 * 179.97438 * 5 3 2 30 30 H 1.08994 * 109.46766 * 299.99641 * 5 3 2 31 31 H 1.08998 * 109.47587 * 35.24536 * 9 8 7 32 32 H 1.08997 * 109.47304 * 155.24544 * 9 8 7 33 33 H 0.96998 * 119.99857 * 0.02562 * 10 9 8 34 34 H 1.08995 * 109.47003 * 300.00031 * 13 11 10 35 35 H 1.09001 * 109.47248 * 60.00418 * 13 11 10 36 36 H 0.96999 * 119.99359 * 180.02562 * 18 17 15 37 37 H 1.08002 * 126.03489 * 179.79005 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7104 7 7 3.7353 2.1252 -1.5856 8 6 4.9307 1.9425 -2.1093 9 6 5.5211 2.8726 -3.1374 10 7 5.0523 2.4874 -4.4709 11 6 5.4533 3.1833 -5.5533 12 8 6.2026 4.1280 -5.4234 13 6 4.9705 2.7874 -6.9249 14 16 5.6786 3.9055 -8.1597 15 6 4.9693 3.2316 -9.6251 16 1 4.3137 2.3755 -9.5634 17 6 5.2532 3.8009 -10.8588 18 7 6.0526 4.8439 -10.9340 19 14 4.5007 3.0868 -12.4122 20 1 3.0199 3.1510 -12.3197 21 1 4.9570 3.8701 -13.5884 22 1 4.9264 1.6722 -12.5634 23 6 5.5743 0.8617 -1.6578 24 16 4.5351 0.0648 -0.4789 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.8829 1.0775 1.9563 29 1 2.6613 2.7671 1.4425 30 1 1.2568 1.8015 1.9563 31 1 5.2095 3.8951 -2.9240 32 1 6.6087 2.8096 -3.1025 33 1 4.4526 1.7321 -4.5747 34 1 5.2822 1.7651 -7.1387 35 1 3.8829 2.8504 -6.9595 36 1 6.2507 5.2419 -11.7961 37 1 6.5579 0.5350 -1.9613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267660458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:01 Heat of formation + Delta-G solvation = -63.790638 kcal Electronic energy + Delta-G solvation = -20470.989130 eV Core-core repulsion = 17079.719441 eV Total energy + Delta-G solvation = -3391.269689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34202 -40.38875 -39.17339 -35.90935 -34.58530 -33.55158 -31.68333 -30.39248 -27.88249 -27.79291 -27.41548 -25.83426 -22.77775 -21.85772 -20.95580 -19.92345 -19.08890 -17.85234 -17.45592 -17.33228 -17.10839 -16.87733 -16.51555 -16.38141 -15.88658 -15.41252 -15.10732 -14.75457 -14.51863 -14.43961 -14.09304 -13.96724 -13.64213 -13.37046 -13.25651 -13.17318 -12.86638 -12.64476 -12.63504 -12.40009 -12.05498 -11.75421 -11.13027 -11.11437 -10.88031 -10.71562 -10.45662 -10.29462 -10.21575 -9.89990 -8.67055 -8.34550 -6.12853 -0.43100 0.30458 0.68048 1.19462 1.38019 1.43994 1.50692 1.57086 1.62524 2.27143 2.33856 2.43547 2.99347 3.25183 3.31659 3.62049 3.91251 4.00357 4.04793 4.05447 4.26343 4.28851 4.47735 4.49012 4.53411 4.54747 4.65302 4.70395 4.78672 4.87868 4.93858 5.16045 5.28995 5.41506 6.02609 6.19614 6.39894 6.62506 7.06423 7.15909 8.74458 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.021822 B = 0.002300 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.792847 B =12171.973040 C =12857.840045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.160 3.840 4 H 0.090 0.910 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.482 5.482 8 C 0.034 3.966 9 C 0.202 3.798 10 N -0.709 5.709 11 C 0.538 3.462 12 O -0.561 6.561 13 C -0.129 4.129 14 S -0.147 6.147 15 C -0.548 4.548 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.235 4.235 24 S 0.211 5.789 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.412 0.588 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.272 0.728 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 -14.308 27.557 32.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.099 3.901 4 H 0.108 0.892 5 C -0.222 4.222 6 C -0.253 4.253 7 N -0.198 5.198 8 C -0.099 4.099 9 C 0.076 3.924 10 N -0.363 5.363 11 C 0.324 3.676 12 O -0.439 6.439 13 C -0.280 4.280 14 S 0.080 5.920 15 C -0.696 4.696 16 H 0.100 0.900 17 C -0.192 4.192 18 N -0.547 5.547 19 Si 0.820 3.180 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.376 4.376 24 S 0.467 5.533 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.248 0.752 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.623 -13.263 28.211 32.344 hybrid contribution -1.116 -0.513 -1.907 2.268 sum -9.739 -13.776 26.304 31.249 Atomic orbital electron populations 1.23049 0.78359 1.04382 1.01243 1.87870 1.22219 1.26332 1.95262 1.20401 0.87717 0.86197 0.95809 0.89175 1.22266 1.04338 1.02166 0.93449 1.27054 1.02519 0.96196 0.99514 1.65992 1.15220 1.28975 1.09611 1.19950 0.90902 0.97612 1.01388 1.19638 0.98618 0.96142 0.77981 1.45740 1.50960 1.34538 1.05053 1.20026 0.79838 0.81848 0.85888 1.90696 1.36986 1.29555 1.86654 1.23361 1.05132 1.04985 0.94542 1.85547 1.64748 1.42395 0.99286 1.23175 1.34456 1.19052 0.92911 0.89970 1.26137 0.95292 0.95037 1.02698 1.70176 1.35286 1.22357 1.26877 0.84998 0.78712 0.78474 0.75770 1.18751 1.20315 1.18609 1.27440 1.07184 0.99325 1.03652 1.83916 1.06539 1.26295 1.36596 0.93589 0.91969 0.87892 0.91156 0.90964 0.89289 0.91340 0.88871 0.75230 0.87042 0.87521 0.91953 0.77862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 113.37 1.23 1.45 16 2 O -0.40 -5.85 10.18 -148.98 -1.52 -7.37 16 3 C 0.16 2.36 3.24 29.85 0.10 2.46 16 4 H 0.09 1.34 7.79 -2.39 -0.02 1.33 16 5 C -0.16 -1.70 9.51 71.98 0.68 -1.02 16 6 C 0.02 0.47 6.34 88.52 0.56 1.03 16 7 N -0.48 -11.16 10.53 -179.39 -1.89 -13.05 16 8 C 0.03 0.73 6.11 41.52 0.25 0.98 16 9 C 0.20 5.11 6.11 85.63 0.52 5.63 16 10 N -0.71 -19.84 5.55 -466.79 -2.59 -22.43 16 11 C 0.54 20.55 7.85 87.66 0.69 21.23 16 12 O -0.56 -26.36 15.86 -3.03 -0.05 -26.41 16 13 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 14 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 15 C -0.55 -31.65 9.50 67.96 0.65 -31.01 16 16 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 17 C 0.01 0.76 5.49 84.86 0.47 1.22 16 18 N -0.91 -56.35 13.22 21.65 0.29 -56.06 16 19 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 23 C -0.24 -3.85 11.11 66.78 0.74 -3.11 16 24 S 0.21 3.14 23.01 -56.49 -1.30 1.84 16 25 H 0.05 0.42 8.09 -2.39 -0.02 0.40 16 26 H 0.06 0.34 7.87 -2.39 -0.02 0.32 16 27 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.09 0.61 7.87 -2.39 -0.02 0.59 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.09 2.21 8.10 -2.39 -0.02 2.19 16 33 H 0.41 9.54 8.46 -92.71 -0.78 8.76 16 34 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 35 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 36 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.20 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -77.84 353.24 0.44 -77.40 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.31 Total: 15.51 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 6.33 Total: -5.94 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -4.19 Total: -91.54 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.56 Total: -33.78 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -5.13 SS G_CDS: -2.46 Total: -7.60 kcal Total: -77.84 0.44 -77.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267660458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.611 kcal (2) G-P(sol) polarization free energy of solvation -77.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds