Wall clock time and date at job start Tue Mar 31 2020 11:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 119.99831 * 2 1 4 4 N 1.46503 * 109.47203 * 124.99946 * 3 2 1 5 5 C 1.46497 * 120.00248 * 275.00032 * 4 3 2 6 6 C 1.50706 * 109.47112 * 275.00060 * 5 4 3 7 7 H 1.08002 * 119.99665 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31505 * 119.99505 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99838 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47067 * 90.00392 * 10 8 6 12 12 H 1.48506 * 109.46953 * 209.99931 * 10 8 6 13 13 H 1.48500 * 109.47157 * 329.99768 * 10 8 6 14 14 S 1.65600 * 119.99643 * 94.99745 * 4 3 2 15 15 O 1.42103 * 106.39978 * 156.46450 * 14 4 3 16 16 O 1.42093 * 106.40746 * 23.54336 * 14 4 3 17 17 C 1.76198 * 107.21789 * 269.99877 * 14 4 3 18 18 S 1.76202 * 126.03977 * 270.04421 * 17 14 4 19 19 C 1.70979 * 90.28029 * 179.97438 * 18 17 14 20 20 C 1.50709 * 124.91513 * 179.97438 * 19 18 17 21 21 N 1.29023 * 110.17115 * 0.02562 * 19 18 17 22 22 C 1.31784 * 117.12236 * 359.97438 * 21 19 18 23 23 C 1.50706 * 122.74680 * 180.02562 * 22 21 19 24 24 H 1.08003 * 120.00315 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.00291 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00022 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47512 * 5.00031 * 3 2 1 28 28 H 1.09003 * 109.46904 * 244.99672 * 3 2 1 29 29 H 1.09001 * 109.47053 * 34.99576 * 5 4 3 30 30 H 1.09000 * 109.47316 * 154.99791 * 5 4 3 31 31 H 0.97004 * 119.99941 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47086 * 270.02975 * 20 19 18 33 33 H 1.09006 * 109.46552 * 30.02273 * 20 19 18 34 34 H 1.08997 * 109.47102 * 150.02221 * 20 19 18 35 35 H 1.08990 * 109.47046 * 89.98073 * 23 22 21 36 36 H 1.09001 * 109.46722 * 209.97899 * 23 22 21 37 37 H 1.09004 * 109.46932 * 329.97719 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5285 1.7621 2.4523 6 6 2.5991 3.2647 2.5450 7 1 2.9553 3.8414 1.7042 8 6 2.2099 3.9030 3.7035 9 7 2.2720 5.2140 3.7844 10 14 1.5944 2.9053 5.1579 11 1 2.7395 2.5488 6.0337 12 1 0.6126 3.7091 5.9295 13 1 0.9417 1.6651 4.6668 14 16 4.5712 0.8759 0.9173 15 8 5.3147 1.5046 1.9523 16 8 4.8567 1.0544 -0.4632 17 6 4.6594 -0.8570 1.2236 18 16 4.9713 -1.6199 2.7809 19 6 4.8576 -3.1645 2.0565 20 6 5.0199 -4.4733 2.7858 21 7 4.6137 -3.0473 0.7950 22 6 4.5013 -1.8249 0.3157 23 6 4.2174 -1.5417 -1.1370 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 1.4983 1.4372 2.5982 30 1 3.1613 1.3205 3.2221 31 1 1.9978 5.6632 4.5993 32 1 6.0681 -4.7718 2.7677 33 1 4.6933 -4.3564 3.8191 34 1 4.4158 -5.2383 2.2981 35 1 3.1400 -1.4905 -1.2933 36 1 4.6708 -0.5908 -1.4171 37 1 4.6363 -2.3388 -1.7512 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292595127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:16 Heat of formation + Delta-G solvation = -2.043494 kcal Electronic energy + Delta-G solvation = -22972.726838 eV Core-core repulsion = 19584.134706 eV Total energy + Delta-G solvation = -3388.592132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.03033 -36.93005 -36.55062 -35.39675 -33.40649 -33.18019 -32.02605 -29.49632 -28.14292 -27.85791 -25.06173 -23.03949 -21.98754 -20.81480 -19.80588 -18.22897 -18.01323 -17.07381 -16.96488 -16.24698 -15.87531 -15.36172 -14.79090 -14.43370 -14.22815 -13.92100 -13.60018 -13.57399 -13.19643 -12.84432 -12.73284 -12.62328 -12.29736 -12.21674 -11.95236 -11.59966 -11.56760 -11.43539 -11.33995 -11.04208 -10.96769 -10.74676 -10.46468 -10.28681 -9.80449 -9.76062 -9.59105 -9.25265 -8.89114 -8.62303 -8.26653 -6.11354 -4.11045 0.17194 0.76938 1.21519 1.54188 2.40779 2.47594 3.24886 3.30313 3.32045 3.55513 3.80142 4.13362 4.35634 4.66338 4.72880 5.02892 5.06322 5.08895 5.18769 5.24121 5.29611 5.44289 5.47228 5.60338 5.73656 5.79554 5.99783 6.12223 6.28891 6.31662 6.67166 6.75796 6.83810 7.01748 7.27842 7.45057 7.52764 8.44589 8.93074 9.47396 11.01941 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.006004 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.187945 B = 4662.463939 C = 5193.853985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.177 4.177 3 C 0.144 3.856 4 N -0.966 5.966 5 C 0.226 3.774 6 C -0.532 4.532 7 H 0.081 0.919 8 C 0.076 3.924 9 N -0.893 5.893 10 Si 0.866 3.134 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.264 1.264 14 S 2.713 3.287 15 O -0.932 6.932 16 O -0.959 6.959 17 C -0.838 4.838 18 S 0.239 5.761 19 C 0.065 3.935 20 C -0.083 4.083 21 N -0.492 5.492 22 C 0.206 3.794 23 C -0.134 4.134 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.038 0.962 30 H 0.028 0.972 31 H 0.265 0.735 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.261 -18.149 -4.660 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.197 4.197 3 C 0.018 3.982 4 N -0.804 5.804 5 C 0.103 3.897 6 C -0.571 4.571 7 H 0.099 0.901 8 C -0.127 4.127 9 N -0.531 5.531 10 Si 0.692 3.308 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.188 1.188 14 S 2.796 3.204 15 O -0.922 6.922 16 O -0.949 6.949 17 C -1.040 5.040 18 S 0.496 5.504 19 C -0.211 4.211 20 C -0.143 4.143 21 N -0.209 5.209 22 C 0.067 3.933 23 C -0.193 4.193 24 H 0.111 0.889 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.143 0.857 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.086 -17.637 -3.941 18.192 hybrid contribution -0.830 -1.093 0.307 1.406 sum 1.257 -18.730 -3.633 19.120 Atomic orbital electron populations 1.23830 0.95763 1.01823 1.00188 1.23564 0.96745 0.99127 1.00231 1.20459 0.93349 0.95561 0.88794 1.57194 1.27382 1.78098 1.17756 1.19518 0.95779 0.96773 0.77649 1.21324 1.44523 0.89356 1.01876 0.90141 1.24820 0.95014 0.94770 0.98065 1.69882 1.47569 1.07689 1.27914 0.87013 0.79451 0.80773 0.83568 1.19644 1.20827 1.18834 1.01622 0.73422 0.71648 0.73690 1.93626 1.68995 1.71776 1.57841 1.93413 1.83938 1.84510 1.33019 1.37476 1.29842 1.32588 1.04070 1.83964 1.62190 0.96747 1.07472 1.27605 0.98203 1.01664 0.93655 1.20563 1.04257 0.90322 0.99189 1.66291 1.18009 1.24831 1.11779 1.20010 0.90722 0.85183 0.97399 1.21351 1.03975 1.06389 0.87597 0.88924 0.87955 0.87980 0.88285 0.88850 0.94427 0.95375 0.92452 0.88984 0.89589 0.88904 0.89255 0.85743 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 14.32 29.01 0.42 -1.84 16 2 C -0.18 -2.50 9.65 -36.03 -0.35 -2.84 16 3 C 0.14 2.38 6.12 -5.19 -0.03 2.34 16 4 N -0.97 -19.22 2.75 -116.95 -0.32 -19.55 16 5 C 0.23 5.22 4.17 -5.19 -0.02 5.20 16 6 C -0.53 -14.75 9.94 -34.44 -0.34 -15.09 16 7 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 8 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 9 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 10 Si 0.87 20.70 27.47 -169.99 -4.67 16.03 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 14 S 2.71 53.50 5.68 -107.50 -0.61 52.89 16 15 O -0.93 -21.83 16.93 -57.17 -0.97 -22.80 16 16 O -0.96 -18.47 13.40 -57.17 -0.77 -19.24 16 17 C -0.84 -14.07 6.65 29.12 0.19 -13.87 16 18 S 0.24 3.48 23.11 -107.50 -2.48 1.00 16 19 C 0.06 0.82 7.39 -13.45 -0.10 0.72 16 20 C -0.08 -0.65 10.46 36.01 0.38 -0.27 16 21 N -0.49 -7.13 10.53 -8.05 -0.08 -7.22 16 22 C 0.21 3.13 6.43 -84.22 -0.54 2.59 16 23 C -0.13 -1.75 9.81 36.01 0.35 -1.40 16 24 H 0.09 1.01 8.06 -52.48 -0.42 0.59 16 25 H 0.10 1.27 7.84 -52.48 -0.41 0.86 16 26 H 0.10 1.38 5.90 -52.49 -0.31 1.07 16 27 H 0.10 1.67 7.76 -51.93 -0.40 1.26 16 28 H 0.09 1.41 6.91 -51.93 -0.36 1.05 16 29 H 0.04 0.83 7.17 -51.93 -0.37 0.46 16 30 H 0.03 0.66 7.04 -51.93 -0.37 0.29 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.02 6.27 -51.93 -0.33 0.70 16 36 H 0.12 1.76 5.02 -51.93 -0.26 1.50 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -33.54 335.89 -8.72 -42.26 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.51 Total: 0.12 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -0.14 Total: -22.39 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.37 Total: -52.93 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -1.73 Total: -42.03 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Atomic # 16 Polarization: 56.98 SS G_CDS: -3.10 Total: 53.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.54 -8.72 -42.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292595127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.220 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds