Wall clock time and date at job start Tue Mar 31 2020 11:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 119.99831 * 2 1 4 4 N 1.46503 * 109.47203 * 124.99946 * 3 2 1 5 5 C 1.46497 * 120.00248 * 275.00032 * 4 3 2 6 6 C 1.50706 * 109.47112 * 275.00060 * 5 4 3 7 7 H 1.08002 * 119.99665 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31505 * 119.99505 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99838 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47067 * 90.00392 * 10 8 6 12 12 H 1.48506 * 109.46953 * 209.99931 * 10 8 6 13 13 H 1.48500 * 109.47157 * 329.99768 * 10 8 6 14 14 S 1.65600 * 119.99643 * 94.99745 * 4 3 2 15 15 O 1.42103 * 106.39978 * 156.46450 * 14 4 3 16 16 O 1.42093 * 106.40746 * 23.54336 * 14 4 3 17 17 C 1.76198 * 107.21789 * 269.99877 * 14 4 3 18 18 S 1.76202 * 126.03977 * 270.04421 * 17 14 4 19 19 C 1.70979 * 90.28029 * 179.97438 * 18 17 14 20 20 C 1.50709 * 124.91513 * 179.97438 * 19 18 17 21 21 N 1.29023 * 110.17115 * 0.02562 * 19 18 17 22 22 C 1.31784 * 117.12236 * 359.97438 * 21 19 18 23 23 C 1.50706 * 122.74680 * 180.02562 * 22 21 19 24 24 H 1.08003 * 120.00315 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.00291 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00022 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47512 * 5.00031 * 3 2 1 28 28 H 1.09003 * 109.46904 * 244.99672 * 3 2 1 29 29 H 1.09001 * 109.47053 * 34.99576 * 5 4 3 30 30 H 1.09000 * 109.47316 * 154.99791 * 5 4 3 31 31 H 0.97004 * 119.99941 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47086 * 270.02975 * 20 19 18 33 33 H 1.09006 * 109.46552 * 30.02273 * 20 19 18 34 34 H 1.08997 * 109.47102 * 150.02221 * 20 19 18 35 35 H 1.08990 * 109.47046 * 89.98073 * 23 22 21 36 36 H 1.09001 * 109.46722 * 209.97899 * 23 22 21 37 37 H 1.09004 * 109.46932 * 329.97719 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5285 1.7621 2.4523 6 6 2.5991 3.2647 2.5450 7 1 2.9553 3.8414 1.7042 8 6 2.2099 3.9030 3.7035 9 7 2.2720 5.2140 3.7844 10 14 1.5944 2.9053 5.1579 11 1 2.7395 2.5488 6.0337 12 1 0.6126 3.7091 5.9295 13 1 0.9417 1.6651 4.6668 14 16 4.5712 0.8759 0.9173 15 8 5.3147 1.5046 1.9523 16 8 4.8567 1.0544 -0.4632 17 6 4.6594 -0.8570 1.2236 18 16 4.9713 -1.6199 2.7809 19 6 4.8576 -3.1645 2.0565 20 6 5.0199 -4.4733 2.7858 21 7 4.6137 -3.0473 0.7950 22 6 4.5013 -1.8249 0.3157 23 6 4.2174 -1.5417 -1.1370 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 1.4983 1.4372 2.5982 30 1 3.1613 1.3205 3.2221 31 1 1.9978 5.6632 4.5993 32 1 6.0681 -4.7718 2.7677 33 1 4.6933 -4.3564 3.8191 34 1 4.4158 -5.2383 2.2981 35 1 3.1400 -1.4905 -1.2933 36 1 4.6708 -0.5908 -1.4171 37 1 4.6363 -2.3388 -1.7512 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292595127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:16 Heat of formation + Delta-G solvation = -26.536314 kcal Electronic energy + Delta-G solvation = -22973.788926 eV Core-core repulsion = 19584.134706 eV Total energy + Delta-G solvation = -3389.654220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13167 -38.48285 -38.06051 -37.02048 -35.00284 -34.29766 -33.69696 -30.33646 -29.95885 -29.01048 -26.56406 -23.99207 -23.87406 -22.04585 -20.93060 -19.73818 -19.13509 -19.02593 -18.54120 -17.65315 -17.37352 -16.42528 -16.25212 -15.90468 -15.52107 -15.43091 -14.68059 -14.58904 -14.50267 -14.34902 -13.95816 -13.79653 -13.55673 -13.54266 -13.34000 -13.15062 -13.11152 -12.80813 -12.71202 -12.48997 -12.38514 -12.23445 -12.07404 -11.91042 -11.70543 -10.93842 -10.87753 -10.78407 -10.34907 -9.98726 -9.88793 -8.28854 -6.34451 -0.97239 -0.67372 0.07175 0.44789 1.30040 1.36244 1.38537 1.39597 1.47331 2.10385 2.34657 2.65981 2.85721 3.04689 3.31037 3.76560 3.83011 3.95561 4.10627 4.27221 4.44116 4.57253 4.59275 4.64914 4.65999 4.77638 4.80863 4.93447 5.03509 5.07268 5.23526 5.27862 5.45703 5.58964 5.71434 5.91984 6.29179 6.35384 6.68438 7.28212 8.88309 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.006004 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.187945 B = 4662.463939 C = 5193.853985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.190 4.190 3 C 0.137 3.863 4 N -0.974 5.974 5 C 0.236 3.764 6 C -0.540 4.540 7 H 0.035 0.965 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.931 3.069 11 H -0.267 1.267 12 H -0.276 1.276 13 H -0.231 1.231 14 S 2.721 3.279 15 O -0.982 6.982 16 O -0.966 6.966 17 C -0.867 4.867 18 S 0.218 5.782 19 C 0.094 3.906 20 C -0.087 4.087 21 N -0.508 5.508 22 C 0.220 3.780 23 C -0.139 4.139 24 H 0.118 0.882 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.268 0.732 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 -22.341 -4.124 22.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.210 4.210 3 C 0.013 3.987 4 N -0.812 5.812 5 C 0.112 3.888 6 C -0.579 4.579 7 H 0.053 0.947 8 C -0.185 4.185 9 N -0.584 5.584 10 Si 0.753 3.247 11 H -0.192 1.192 12 H -0.202 1.202 13 H -0.154 1.154 14 S 2.810 3.190 15 O -0.972 6.972 16 O -0.956 6.956 17 C -1.073 5.073 18 S 0.476 5.524 19 C -0.181 4.181 20 C -0.147 4.147 21 N -0.225 5.225 22 C 0.080 3.920 23 C -0.197 4.197 24 H 0.136 0.864 25 H 0.120 0.880 26 H 0.130 0.870 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.897 -21.795 -3.444 22.083 hybrid contribution -0.412 0.119 0.019 0.429 sum 0.486 -21.676 -3.425 21.950 Atomic orbital electron populations 1.24066 0.95253 1.03054 0.97490 1.23363 0.97103 0.97888 1.02612 1.20627 0.93046 0.97017 0.88004 1.57098 1.27819 1.78857 1.17413 1.19229 0.96716 0.93457 0.79447 1.21616 1.43745 0.91939 1.00606 0.94699 1.25817 0.95270 0.95889 1.01535 1.70048 1.49371 1.09916 1.29101 0.85959 0.79218 0.80288 0.79223 1.19221 1.20169 1.15361 1.00822 0.72855 0.72457 0.72883 1.93561 1.70322 1.74065 1.59295 1.93404 1.83931 1.85402 1.32864 1.36783 1.33930 1.30592 1.06012 1.84008 1.63240 0.98201 1.06928 1.28492 0.94357 1.02271 0.93013 1.20910 1.06061 0.87785 0.99928 1.66428 1.19612 1.23909 1.12539 1.20361 0.88491 0.85195 0.97930 1.21449 1.05179 1.06343 0.86771 0.86363 0.87995 0.87020 0.89444 0.88137 0.92643 0.95230 0.92289 0.86685 0.87312 0.87396 0.87438 0.87174 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 14.32 67.78 0.97 -2.65 16 2 C -0.19 -5.00 9.65 25.65 0.25 -4.75 16 3 C 0.14 4.55 6.12 85.63 0.52 5.08 16 4 N -0.97 -39.34 2.75 -523.91 -1.44 -40.78 16 5 C 0.24 10.94 4.17 85.64 0.36 11.29 16 6 C -0.54 -31.09 9.94 25.60 0.25 -30.84 16 7 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 8 C 0.01 0.77 5.47 84.66 0.46 1.23 16 9 N -0.94 -59.21 13.96 21.45 0.30 -58.91 16 10 Si 0.93 42.36 27.47 68.60 1.88 44.24 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 13 H -0.23 -9.20 6.54 99.48 0.65 -8.55 16 14 S 2.72 109.98 5.68 -56.49 -0.32 109.66 16 15 O -0.98 -48.07 16.93 -128.00 -2.17 -50.24 16 16 O -0.97 -38.25 13.40 -128.00 -1.71 -39.96 16 17 C -0.87 -28.44 6.65 66.78 0.44 -28.00 16 18 S 0.22 6.04 23.11 -56.49 -1.31 4.73 16 19 C 0.09 2.07 7.39 88.52 0.65 2.72 16 20 C -0.09 -0.95 10.46 71.24 0.75 -0.21 16 21 N -0.51 -13.17 10.53 -179.39 -1.89 -15.06 16 22 C 0.22 6.29 6.43 41.52 0.27 6.56 16 23 C -0.14 -3.36 9.81 71.24 0.70 -2.66 16 24 H 0.12 2.09 8.06 -2.91 -0.02 2.07 16 25 H 0.10 2.31 7.84 -2.91 -0.02 2.28 16 26 H 0.11 2.73 5.90 -2.91 -0.02 2.71 16 27 H 0.09 3.03 7.76 -2.39 -0.02 3.01 16 28 H 0.10 3.09 6.91 -2.39 -0.02 3.07 16 29 H 0.06 2.37 7.17 -2.39 -0.02 2.35 16 30 H 0.03 1.37 7.04 -2.39 -0.02 1.36 16 31 H 0.27 15.61 8.31 -92.70 -0.77 14.83 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 2.20 6.27 -2.39 -0.01 2.19 16 36 H 0.11 3.04 5.02 -2.39 -0.01 3.03 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -76.08 335.89 0.00 -76.08 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.03 Total: 12.47 kcal Atomic # 6 Polarization: -47.85 SS G_CDS: 5.63 Total: -42.23 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -3.03 Total: -114.75 kcal Atomic # 8 Polarization: -86.32 SS G_CDS: -3.88 Total: -90.20 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.88 Total: 44.24 kcal Atomic # 16 Polarization: 116.02 SS G_CDS: -1.63 Total: 114.39 kcal Total: -76.08 0.00 -76.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292595127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.539 kcal (2) G-P(sol) polarization free energy of solvation -76.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds