Wall clock time and date at job start Tue Mar 31 2020 11:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.38010 * 119.99780 * 180.02562 * 2 1 3 13 13 N 1.28901 * 124.81544 * 359.72174 * 12 2 1 14 14 C 1.34808 * 117.87409 * 179.76861 * 13 12 2 15 15 C 1.41102 * 128.73154 * 180.21279 * 14 13 12 16 16 C 1.37192 * 120.43671 * 180.30922 * 15 14 13 17 17 C 1.50700 * 119.70232 * 180.02562 * 16 15 14 18 18 F 1.39899 * 109.47742 * 89.99655 * 17 16 15 19 19 F 1.39902 * 109.46864 * 209.99730 * 17 16 15 20 20 F 1.39905 * 109.47110 * 329.99358 * 17 16 15 21 21 C 1.38716 * 120.59803 * 0.02562 * 16 15 14 22 22 C 1.37726 * 119.97751 * 359.94427 * 21 16 15 23 23 C 1.39254 * 120.20169 * 0.07591 * 22 21 16 24 24 S 1.75797 * 124.81612 * 180.02562 * 12 2 1 25 25 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 26 26 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 27 27 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 28 28 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 29 29 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 1.07999 * 119.77756 * 0.28620 * 15 14 13 32 32 H 1.08005 * 120.01089 * 180.02562 * 21 16 15 33 33 H 1.08000 * 119.89777 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.5589 3.6147 0.6732 8 14 3.4497 3.4098 3.4340 9 1 4.7439 2.8472 3.8962 10 1 3.5032 4.8924 3.4987 11 1 2.3550 2.9154 4.3071 12 6 2.1550 -1.1952 -0.0005 13 7 1.6064 -2.3617 0.0041 14 6 2.4165 -3.4392 -0.0020 15 6 2.0673 -4.8063 -0.0030 16 6 3.0413 -5.7724 -0.0033 17 6 2.6496 -7.2276 -0.0049 18 9 2.5292 -7.6768 -1.3243 19 9 3.6311 -7.9754 0.6545 20 9 1.4250 -7.3817 0.6538 21 6 4.3835 -5.4219 -0.0021 22 6 4.7479 -4.0938 -0.0017 23 6 3.7726 -3.0998 -0.0010 24 16 3.9067 -1.3429 0.0000 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6084 2.0283 -0.5138 29 1 3.1499 1.1383 -0.5138 30 1 4.0390 4.4388 0.8505 31 1 1.0263 -5.0939 -0.0031 32 1 5.1424 -6.1904 -0.0027 33 1 5.7932 -3.8224 -0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301611448.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:37 Heat of formation + Delta-G solvation = -91.995343 kcal Electronic energy + Delta-G solvation = -23106.453278 eV Core-core repulsion = 19036.659850 eV Total energy + Delta-G solvation = -4069.793428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.055 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.20284 -47.71660 -47.66183 -39.98255 -37.65147 -35.45637 -32.85402 -31.62650 -29.66107 -28.16153 -26.20412 -26.08493 -23.73410 -22.69302 -21.81867 -20.14928 -18.63809 -18.51925 -18.36349 -17.40608 -16.82904 -16.26291 -15.94012 -14.96560 -14.80697 -14.69587 -14.51402 -14.35318 -14.13622 -13.99628 -13.85020 -13.82209 -13.68023 -13.47302 -13.18734 -12.38795 -12.04932 -11.91763 -11.88971 -11.81105 -11.53490 -11.10130 -10.94156 -10.56531 -10.33332 -10.04903 -9.96879 -9.18419 -9.12550 -8.73121 -7.95920 -7.13195 -6.32044 -4.43465 0.82513 0.95511 1.43768 2.07769 2.60806 2.65079 3.15458 3.22706 3.24716 3.39828 3.69382 3.70968 3.99829 4.21950 4.40414 4.66466 4.83810 4.99771 5.04437 5.31703 5.41970 5.70171 5.81846 5.89091 6.03157 6.13049 6.17674 6.23605 6.50179 6.68443 6.85925 7.26593 7.61600 7.71386 7.79847 8.22050 8.63563 9.25220 10.72692 Molecular weight = 316.06amu Principal moments of inertia in cm(-1) A = 0.024965 B = 0.003229 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.283853 B = 8669.836661 C = 9015.114861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.547 5.547 3 C 0.243 3.757 4 C -0.546 4.546 5 H 0.065 0.935 6 C 0.069 3.931 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.403 3.597 13 N -0.582 5.582 14 C 0.153 3.847 15 C -0.050 4.050 16 C -0.163 4.163 17 C 0.513 3.487 18 F -0.178 7.178 19 F -0.178 7.178 20 F -0.178 7.178 21 C -0.108 4.108 22 C -0.047 4.047 23 C -0.203 4.203 24 S 0.087 5.913 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.268 0.732 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.052 -15.378 -2.682 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.258 5.258 3 C 0.124 3.876 4 C -0.584 4.584 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.028 3.972 13 N -0.312 5.312 14 C 0.030 3.970 15 C -0.072 4.072 16 C -0.167 4.167 17 C 0.458 3.542 18 F -0.159 7.159 19 F -0.159 7.159 20 F -0.159 7.159 21 C -0.131 4.131 22 C -0.070 4.070 23 C -0.324 4.324 24 S 0.340 5.660 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.159 -14.138 -2.730 14.400 hybrid contribution -0.161 -0.576 0.955 1.127 sum -0.002 -14.713 -1.775 14.820 Atomic orbital electron populations 1.21668 0.78515 1.03231 1.01073 1.46894 1.06126 1.02284 1.70510 1.19696 0.91932 0.77457 0.98466 1.21420 1.37858 1.07489 0.91673 0.91726 1.24933 0.94778 0.95895 0.97934 1.69913 1.37212 1.14416 1.31059 0.86433 0.79039 0.77818 0.83911 1.20198 1.20874 1.19653 1.23903 0.91456 0.89335 0.92507 1.66363 1.35466 0.95835 1.33536 1.18585 0.87138 0.92555 0.98755 1.20113 0.99312 0.88854 0.98913 1.19453 0.95773 0.90338 1.11182 1.18252 0.74472 0.87761 0.73670 1.93217 1.95769 1.90826 1.36128 1.93176 1.62531 1.79037 1.81183 1.93192 1.45106 1.96429 1.81195 1.20508 0.93929 0.96232 1.02417 1.20140 0.98169 0.90338 0.98376 1.23926 0.97978 0.98625 1.11895 1.85598 1.05593 0.96216 1.78625 0.93265 0.91054 0.90404 0.93091 0.94279 0.92197 0.84387 0.84508 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 10.55 59.84 0.63 2.30 16 2 N -0.55 -10.99 2.94 -184.18 -0.54 -11.54 16 3 C 0.24 5.56 5.14 -5.20 -0.03 5.53 16 4 C -0.55 -13.74 9.39 -34.44 -0.32 -14.06 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -23.72 13.29 55.43 0.74 -22.99 16 8 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 C 0.40 8.02 7.87 -88.90 -0.70 7.32 16 13 N -0.58 -11.17 9.79 -11.16 -0.11 -11.28 16 14 C 0.15 2.67 6.94 -84.89 -0.59 2.08 16 15 C -0.05 -0.74 9.44 -38.88 -0.37 -1.11 16 16 C -0.16 -2.13 5.44 -104.83 -0.57 -2.70 16 17 C 0.51 6.13 3.35 36.01 0.12 6.25 16 18 F -0.18 -2.16 17.30 2.25 0.04 -2.12 16 19 F -0.18 -2.05 16.44 2.25 0.04 -2.01 16 20 F -0.18 -2.20 16.41 2.25 0.04 -2.16 16 21 C -0.11 -1.31 9.39 -39.59 -0.37 -1.68 16 22 C -0.05 -0.63 10.06 -39.39 -0.40 -1.03 16 23 C -0.20 -3.36 6.52 -38.62 -0.25 -3.61 16 24 S 0.09 1.61 21.89 -107.50 -2.35 -0.74 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.15 7.60 -51.93 -0.39 0.76 16 27 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 28 H 0.05 1.19 8.07 -51.93 -0.42 0.77 16 29 H 0.04 0.94 7.04 -51.93 -0.37 0.58 16 30 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.14 1.88 7.55 -52.49 -0.40 1.48 16 32 H 0.14 1.29 7.59 -52.48 -0.40 0.89 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 316.70 15.07 4.77 4.77 Total: -1.00 -26.76 316.70 -8.13 -34.89 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -2.78 Total: -2.82 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -2.94 Total: 0.96 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.08 Total: -45.80 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.11 Total: -6.28 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.35 Total: -0.74 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.76 -8.13 -34.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301611448.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.110 kcal (2) G-P(sol) polarization free energy of solvation -26.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds